install(ok): /var/lib/condor/execute/dir_1886960/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1886960/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1886960/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:42 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1886960/ds/sub-687508/sub-687508_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-687508/sub-687508_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 61s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
46s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
86s
SPM preprocessing 1 (estimate 2): 60s
SPM preprocessing 2 (write)
Write Segmentation 22s
Update Segmentation 17s
Update Skull-Stripping 47s
Update probability maps 9s
95s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 10s
109s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.04) 17s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
104s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 19s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.07) 80s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
150s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 13s
ROI estimation of 'hammers' atlas 33s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 29s
ROI estimation of 'anatomy3' atlas 42s
ROI estimation of 'julichbrain' atlas 58s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 43s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 83s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 105s
Write results 107s
528s
Quality check 16s
/var/lib/condor/execute/dir_1886960/ds/sub-687508/report/catreport_sub-687508_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 11 second(s).
Image Quality Rating (IQR): 87.71% (B+)
GM volume (GMV): 44.41% (764.27 / 1721.04 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1886960/ds/sub-687508/mri
Reports are saved in /var/lib/condor/execute/dir_1886960/ds/sub-687508/report
Labels are saved in /var/lib/condor/execute/dir_1886960/ds/sub-687508/label
------------------------------------------------------------------------
22-Oct-2025 01:07:55 - Done 'CAT12: Segmentation'
22-Oct-2025 01:07:56 - Done
Bye for now...
get(ok): sourcedata/raw/sub-687508/anat/sub-687508_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1886960/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1886960/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-687508/label/catROI_sub-687508_acq-standard_T1w.mat (file)
add(ok): sub-687508/label/catROI_sub-687508_acq-standard_T1w.xml (file)
add(ok): sub-687508/mri/it_sub-687508_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-687508/mri/it_sub-687508_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-687508/mri/m0wp1sub-687508_acq-standard_T1w.nii.gz (file)
add(ok): sub-687508/mri/mwp1sub-687508_acq-standard_T1w.nii.gz (file)
add(ok): sub-687508/mri/p0sub-687508_acq-standard_T1w.nii.gz (file)
add(ok): sub-687508/mri/t_sub-687508_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-687508/mri/t_sub-687508_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-687508/mri/wp0sub-687508_acq-standard_T1w.nii.gz (file)
add(ok): sub-687508/report/cat_sub-687508_acq-standard_T1w.mat (file)
add(ok): sub-687508/report/cat_sub-687508_acq-standard_T1w.xml (file)
add(ok): sub-687508/report/catlog_sub-687508_acq-standard_T1w.txt (file)
add(ok): sub-687508/report/catreport_sub-687508_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:08:44 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:08:44 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1886960/ds/sub-687508/sub-687508_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-687508/sub-687508_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
45s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
91s
SPM preprocessing 1 (estimate 2): 64s
SPM preprocessing 2 (write)
Write Segmentation 22s
Update Segmentation 17s
Update Skull-Stripping 47s
Update probability maps 9s
94s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 3s
101s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.07) 16s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
106s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 18s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 83s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
150s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 28s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 22s
ROI estimation of 'anatomy3' atlas 31s
ROI estimation of 'julichbrain' atlas 46s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 37s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 71s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 86s
Write results 88s
438s
Quality check 16s
/var/lib/condor/execute/dir_1886960/ds/sub-687508/report/catreport_sub-687508_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 43 second(s).
Image Quality Rating (IQR): 85.69% (B)
GM volume (GMV): 43.71% (735.05 / 1681.74 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1886960/ds/sub-687508/mri
Reports are saved in /var/lib/condor/execute/dir_1886960/ds/sub-687508/report
Labels are saved in /var/lib/condor/execute/dir_1886960/ds/sub-687508/label
------------------------------------------------------------------------
22-Oct-2025 01:34:29 - Done 'CAT12: Segmentation'
22-Oct-2025 01:34:29 - Done
Bye for now...
get(ok): sourcedata/raw/sub-687508/anat/sub-687508_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-687508/label/catROI_sub-687508_acq-standard_T1w.mat (file)
unlock(ok): sub-687508/mri/it_sub-687508_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-687508/mri/it_sub-687508_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-687508/mri/m0wp1sub-687508_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-687508/mri/mwp1sub-687508_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-687508/mri/p0sub-687508_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-687508/mri/t_sub-687508_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-687508/mri/t_sub-687508_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-687508/mri/wp0sub-687508_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-687508/report/cat_sub-687508_acq-standard_T1w.mat (file)
unlock(ok): sub-687508/report/catreport_sub-687508_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1886960/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-687508/label/catROI_sub-687508_acq-headmotion2_T1w.mat (file)
add(ok): sub-687508/label/catROI_sub-687508_acq-headmotion2_T1w.xml (file)
add(ok): sub-687508/mri/it_sub-687508_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-687508/mri/it_sub-687508_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-687508/mri/m0wp1sub-687508_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-687508/mri/mwp1sub-687508_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-687508/mri/p0sub-687508_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-687508/mri/t_sub-687508_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-687508/mri/t_sub-687508_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-687508/mri/wp0sub-687508_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-687508/report/cat_sub-687508_acq-headmotion2_T1w.mat (file)
add(ok): sub-687508/report/cat_sub-687508_acq-headmotion2_T1w.xml (file)
add(ok): sub-687508/report/catlog_sub-687508_acq-headmotion2_T1w.txt (file)
add(ok): sub-687508/report/catreport_sub-687508_acq-headmotion2_T1w.pdf (file)
add(ok): sub-687508/label/catROI_sub-687508_acq-standard_T1w.mat (file)
add(ok): sub-687508/mri/it_sub-687508_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-687508/mri/it_sub-687508_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-687508/mri/m0wp1sub-687508_acq-standard_T1w.nii.gz (file)
add(ok): sub-687508/mri/mwp1sub-687508_acq-standard_T1w.nii.gz (file)
add(ok): sub-687508/mri/p0sub-687508_acq-standard_T1w.nii.gz (file)
add(ok): sub-687508/mri/t_sub-687508_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-687508/mri/t_sub-687508_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-687508/mri/wp0sub-687508_acq-standard_T1w.nii.gz (file)
add(ok): sub-687508/report/cat_sub-687508_acq-standard_T1w.mat (file)
add(ok): sub-687508/report/catreport_sub-687508_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:35:19 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:35:19 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1886960/ds/sub-687508/sub-687508_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-687508/sub-687508_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 59s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
45s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
85s
SPM preprocessing 1 (estimate 2): 64s
SPM preprocessing 2 (write)
Write Segmentation 22s
Update Segmentation 17s
Update Skull-Stripping 47s
Update probability maps 9s
94s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 8s
106s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.06) 17s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
105s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 19s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.07) 94s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
165s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 27s
ROI estimation of 'julichbrain' atlas 32s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 56s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 80s
Write results 82s
359s
Quality check 16s
/var/lib/condor/execute/dir_1886960/ds/sub-687508/report/catreport_sub-687508_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 21 second(s).
Image Quality Rating (IQR): 86.70% (B+)
GM volume (GMV): 43.36% (737.26 / 1700.29 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1886960/ds/sub-687508/mri
Reports are saved in /var/lib/condor/execute/dir_1886960/ds/sub-687508/report
Labels are saved in /var/lib/condor/execute/dir_1886960/ds/sub-687508/label
------------------------------------------------------------------------
22-Oct-2025 01:59:42 - Done 'CAT12: Segmentation'
22-Oct-2025 01:59:42 - Done
Bye for now...
get(ok): sourcedata/raw/sub-687508/anat/sub-687508_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-687508/label/catROI_sub-687508_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-687508/label/catROI_sub-687508_acq-standard_T1w.mat (file)
unlock(ok): sub-687508/mri/it_sub-687508_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-687508/mri/it_sub-687508_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-687508/mri/it_sub-687508_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-687508/mri/it_sub-687508_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-687508/mri/m0wp1sub-687508_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-687508/mri/m0wp1sub-687508_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-687508/mri/mwp1sub-687508_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-687508/mri/mwp1sub-687508_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-687508/mri/p0sub-687508_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-687508/mri/p0sub-687508_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-687508/mri/t_sub-687508_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-687508/mri/t_sub-687508_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-687508/mri/t_sub-687508_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-687508/mri/t_sub-687508_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-687508/mri/wp0sub-687508_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-687508/mri/wp0sub-687508_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-687508/report/cat_sub-687508_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-687508/report/cat_sub-687508_acq-standard_T1w.mat (file)
unlock(ok): sub-687508/report/catreport_sub-687508_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-687508/report/catreport_sub-687508_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1886960/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-687508/label/catROI_sub-687508_acq-headmotion1_T1w.mat (file)
add(ok): sub-687508/label/catROI_sub-687508_acq-headmotion1_T1w.xml (file)
add(ok): sub-687508/mri/it_sub-687508_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-687508/mri/it_sub-687508_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-687508/mri/m0wp1sub-687508_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-687508/mri/mwp1sub-687508_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-687508/mri/p0sub-687508_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-687508/mri/t_sub-687508_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-687508/mri/t_sub-687508_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-687508/mri/wp0sub-687508_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-687508/report/cat_sub-687508_acq-headmotion1_T1w.mat (file)
add(ok): sub-687508/report/cat_sub-687508_acq-headmotion1_T1w.xml (file)
add(ok): sub-687508/report/catlog_sub-687508_acq-headmotion1_T1w.txt (file)
add(ok): sub-687508/report/catreport_sub-687508_acq-headmotion1_T1w.pdf (file)
add(ok): sub-687508/label/catROI_sub-687508_acq-headmotion2_T1w.mat (file)
add(ok): sub-687508/label/catROI_sub-687508_acq-standard_T1w.mat (file)
add(ok): sub-687508/mri/it_sub-687508_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-687508/mri/it_sub-687508_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-687508/mri/it_sub-687508_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-687508/mri/it_sub-687508_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-687508/mri/m0wp1sub-687508_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-687508/mri/m0wp1sub-687508_acq-standard_T1w.nii.gz (file)
add(ok): sub-687508/mri/mwp1sub-687508_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-687508/mri/mwp1sub-687508_acq-standard_T1w.nii.gz (file)
add(ok): sub-687508/mri/p0sub-687508_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-687508/mri/p0sub-687508_acq-standard_T1w.nii.gz (file)
add(ok): sub-687508/mri/t_sub-687508_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-687508/mri/t_sub-687508_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-687508/mri/t_sub-687508_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-687508/mri/t_sub-687508_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-687508/mri/wp0sub-687508_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-687508/mri/wp0sub-687508_acq-standard_T1w.nii.gz (file)
add(ok): sub-687508/report/cat_sub-687508_acq-headmotion2_T1w.mat (file)
add(ok): sub-687508/report/cat_sub-687508_acq-standard_T1w.mat (file)
add(ok): sub-687508/report/catreport_sub-687508_acq-headmotion2_T1w.pdf (file)
add(ok): sub-687508/report/catreport_sub-687508_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-687508/label/catROI_sub-687508_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/label/catROI_sub-687508_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/label/catROI_sub-687508_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/it_sub-687508_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/it_sub-687508_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/it_sub-687508_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/it_sub-687508_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/it_sub-687508_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/it_sub-687508_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/m0wp1sub-687508_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/m0wp1sub-687508_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/m0wp1sub-687508_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/mwp1sub-687508_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/mwp1sub-687508_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/mwp1sub-687508_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/p0sub-687508_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/p0sub-687508_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/p0sub-687508_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/t_sub-687508_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/t_sub-687508_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/t_sub-687508_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/t_sub-687508_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/t_sub-687508_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/t_sub-687508_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/wp0sub-687508_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/wp0sub-687508_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-687508/mri/wp0sub-687508_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-687508/report/cat_sub-687508_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/report/cat_sub-687508_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/report/cat_sub-687508_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-687508/report/catreport_sub-687508_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-687508/report/catreport_sub-687508_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-687508/report/catreport_sub-687508_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001369 seconds
flock: executing git
SUCCESS