install(ok): /var/lib/condor/execute/dir_1711460/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1711460/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1711460/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:38:53 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:38:53 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1711460/ds/sub-409228/sub-409228_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-409228/sub-409228_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 48s
Affine preprocessing (APP)
Initialize 6s
Estimate background 5s
Initial correction 5s
Refine background 3s
Final correction 4s
Final scaling 5s
32s
Correct center-of-mass 3s
Affine registration 6s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
59s
SPM preprocessing 1 (estimate 2): 46s
SPM preprocessing 2 (write)
Write Segmentation 15s
Update Segmentation 11s
Update Skull-Stripping 31s
Update probability maps 6s
64s
Global intensity correction 12s
SANLM denoising after intensity normalization (medium) 13s
Fast Optimized Shooting registration 2s
71s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 1s
Prepare segments (LASmod = 1.00) 10s
Estimate local tissue thresholds (WM) 15s
Estimate local tissue thresholds (GM) 18s
Intensity transformation 0s
SANLM denoising after LAS (medium) 21s
70s
ROI segmentation (partitioning)
Atlas -> subject space 6s
Major structures 13s
Ventricle detection 12s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 55s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
99s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
9s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 6s
ROI estimation of 'neuromorphometrics' atlas 22s
ROI estimation of 'lpba40' atlas 6s
ROI estimation of 'hammers' atlas 15s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 3s
ROI estimation of 'ibsr' atlas 5s
ROI estimation of 'aal3' atlas 8s
ROI estimation of 'mori' atlas 9s
ROI estimation of 'anatomy3' atlas 13s
ROI estimation of 'julichbrain' atlas 18s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 3s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 7s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 43s
Write results 44s
210s
Quality check 10s
/var/lib/condor/execute/dir_1711460/ds/sub-409228/report/catreport_sub-409228_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 15 minute(s) and 28 second(s).
Image Quality Rating (IQR): 87.72% (B+)
GM volume (GMV): 46.91% (706.23 / 1505.38 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1711460/ds/sub-409228/mri
Reports are saved in /var/lib/condor/execute/dir_1711460/ds/sub-409228/report
Labels are saved in /var/lib/condor/execute/dir_1711460/ds/sub-409228/label
------------------------------------------------------------------------
22-Oct-2025 00:54:23 - Done 'CAT12: Segmentation'
22-Oct-2025 00:54:23 - Done
Bye for now...
get(ok): sourcedata/raw/sub-409228/anat/sub-409228_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1711460/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1711460/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-409228/label/catROI_sub-409228_acq-standard_T1w.mat (file)
add(ok): sub-409228/label/catROI_sub-409228_acq-standard_T1w.xml (file)
add(ok): sub-409228/mri/it_sub-409228_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-409228/mri/it_sub-409228_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-409228/mri/m0wp1sub-409228_acq-standard_T1w.nii.gz (file)
add(ok): sub-409228/mri/mwp1sub-409228_acq-standard_T1w.nii.gz (file)
add(ok): sub-409228/mri/p0sub-409228_acq-standard_T1w.nii.gz (file)
add(ok): sub-409228/mri/t_sub-409228_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-409228/mri/t_sub-409228_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-409228/mri/wp0sub-409228_acq-standard_T1w.nii.gz (file)
add(ok): sub-409228/report/cat_sub-409228_acq-standard_T1w.mat (file)
add(ok): sub-409228/report/cat_sub-409228_acq-standard_T1w.xml (file)
add(ok): sub-409228/report/catlog_sub-409228_acq-standard_T1w.txt (file)
add(ok): sub-409228/report/catreport_sub-409228_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:54:56 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:54:56 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1711460/ds/sub-409228/sub-409228_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-409228/sub-409228_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 50s
Affine preprocessing (APP)
Initialize 6s
Estimate background 6s
Initial correction 5s
Refine background 3s
Final correction 4s
Final scaling 5s
33s
Correct center-of-mass 3s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
63s
SPM preprocessing 1 (estimate 2): 57s
SPM preprocessing 2 (write)
Write Segmentation 15s
Update Segmentation 11s
Update Skull-Stripping 31s
Update probability maps 6s
64s
Global intensity correction 11s
SANLM denoising after intensity normalization (medium) 12s
Fast Optimized Shooting registration 2s
70s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 2s
Prepare partitions 1s
Prepare segments (LASmod = 1.08) 10s
Estimate local tissue thresholds (WM) 14s
Estimate local tissue thresholds (GM) 17s
Intensity transformation 0s
SANLM denoising after LAS (medium) 21s
69s
ROI segmentation (partitioning)
Atlas -> subject space 6s
Major structures 13s
Ventricle detection 9s
Blood vessel detection 6s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 57s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
96s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.970.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 2s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
9s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 6s
ROI estimation of 'neuromorphometrics' atlas 21s
ROI estimation of 'lpba40' atlas 6s
ROI estimation of 'hammers' atlas 15s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 3s
ROI estimation of 'ibsr' atlas 5s
ROI estimation of 'aal3' atlas 8s
ROI estimation of 'mori' atlas 9s
ROI estimation of 'anatomy3' atlas 13s
ROI estimation of 'julichbrain' atlas 18s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 3s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 7s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 44s
Write results 45s
212s
Quality check 10s
/var/lib/condor/execute/dir_1711460/ds/sub-409228/report/catreport_sub-409228_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 16 minute(s) and 30 second(s).
Image Quality Rating (IQR): 84.31% (B)
GM volume (GMV): 46.46% (671.15 / 1444.73 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1711460/ds/sub-409228/mri
Reports are saved in /var/lib/condor/execute/dir_1711460/ds/sub-409228/report
Labels are saved in /var/lib/condor/execute/dir_1711460/ds/sub-409228/label
------------------------------------------------------------------------
22-Oct-2025 01:11:28 - Done 'CAT12: Segmentation'
22-Oct-2025 01:11:28 - Done
Bye for now...
get(ok): sourcedata/raw/sub-409228/anat/sub-409228_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-409228/label/catROI_sub-409228_acq-standard_T1w.mat (file)
unlock(ok): sub-409228/mri/it_sub-409228_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-409228/mri/it_sub-409228_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-409228/mri/m0wp1sub-409228_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-409228/mri/mwp1sub-409228_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-409228/mri/p0sub-409228_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-409228/mri/t_sub-409228_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-409228/mri/t_sub-409228_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-409228/mri/wp0sub-409228_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-409228/report/cat_sub-409228_acq-standard_T1w.mat (file)
unlock(ok): sub-409228/report/catreport_sub-409228_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1711460/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-409228/label/catROI_sub-409228_acq-headmotion2_T1w.mat (file)
add(ok): sub-409228/label/catROI_sub-409228_acq-headmotion2_T1w.xml (file)
add(ok): sub-409228/mri/it_sub-409228_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-409228/mri/it_sub-409228_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-409228/mri/m0wp1sub-409228_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-409228/mri/mwp1sub-409228_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-409228/mri/p0sub-409228_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-409228/mri/t_sub-409228_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-409228/mri/t_sub-409228_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-409228/mri/wp0sub-409228_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-409228/report/cat_sub-409228_acq-headmotion2_T1w.mat (file)
add(ok): sub-409228/report/cat_sub-409228_acq-headmotion2_T1w.xml (file)
add(ok): sub-409228/report/catlog_sub-409228_acq-headmotion2_T1w.txt (file)
add(ok): sub-409228/report/catreport_sub-409228_acq-headmotion2_T1w.pdf (file)
add(ok): sub-409228/label/catROI_sub-409228_acq-standard_T1w.mat (file)
add(ok): sub-409228/mri/it_sub-409228_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-409228/mri/it_sub-409228_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-409228/mri/m0wp1sub-409228_acq-standard_T1w.nii.gz (file)
add(ok): sub-409228/mri/mwp1sub-409228_acq-standard_T1w.nii.gz (file)
add(ok): sub-409228/mri/p0sub-409228_acq-standard_T1w.nii.gz (file)
add(ok): sub-409228/mri/t_sub-409228_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-409228/mri/t_sub-409228_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-409228/mri/wp0sub-409228_acq-standard_T1w.nii.gz (file)
add(ok): sub-409228/report/cat_sub-409228_acq-standard_T1w.mat (file)
add(ok): sub-409228/report/catreport_sub-409228_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:12:03 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:12:03 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1711460/ds/sub-409228/sub-409228_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-409228/sub-409228_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 47s
Affine preprocessing (APP)
Initialize 6s
Estimate background 6s
Initial correction 5s
Refine background 3s
Final correction 4s
Final scaling 4s
32s
Correct center-of-mass 3s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
59s
SPM preprocessing 1 (estimate 2): 53s
SPM preprocessing 2 (write)
Write Segmentation 15s
Update Segmentation 11s
Update Skull-Stripping 31s
Update probability maps 6s
64s
Global intensity correction 12s
SANLM denoising after intensity normalization (medium) 12s
Fast Optimized Shooting registration 2s
71s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 1s
Prepare segments (LASmod = 1.00) 10s
Estimate local tissue thresholds (WM) 14s
Estimate local tissue thresholds (GM) 17s
Intensity transformation 0s
SANLM denoising after LAS (medium) 21s
69s
ROI segmentation (partitioning)
Atlas -> subject space 6s
Major structures 13s
Ventricle detection 9s
Blood vessel detection 6s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 47s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
87s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
9s
2s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 6s
ROI estimation of 'neuromorphometrics' atlas 22s
ROI estimation of 'lpba40' atlas 6s
ROI estimation of 'hammers' atlas 15s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 3s
ROI estimation of 'ibsr' atlas 5s
ROI estimation of 'aal3' atlas 8s
ROI estimation of 'mori' atlas 9s
ROI estimation of 'anatomy3' atlas 13s
ROI estimation of 'julichbrain' atlas 18s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 3s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 7s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 44s
Write results 45s
212s
Quality check 9s
/var/lib/condor/execute/dir_1711460/ds/sub-409228/report/catreport_sub-409228_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 15 minute(s) and 48 second(s).
Image Quality Rating (IQR): 84.31% (B)
GM volume (GMV): 45.15% (661.80 / 1465.67 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1711460/ds/sub-409228/mri
Reports are saved in /var/lib/condor/execute/dir_1711460/ds/sub-409228/report
Labels are saved in /var/lib/condor/execute/dir_1711460/ds/sub-409228/label
------------------------------------------------------------------------
22-Oct-2025 01:27:53 - Done 'CAT12: Segmentation'
22-Oct-2025 01:27:53 - Done
Bye for now...
get(ok): sourcedata/raw/sub-409228/anat/sub-409228_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-409228/label/catROI_sub-409228_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-409228/label/catROI_sub-409228_acq-standard_T1w.mat (file)
unlock(ok): sub-409228/mri/it_sub-409228_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-409228/mri/it_sub-409228_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-409228/mri/it_sub-409228_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-409228/mri/it_sub-409228_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-409228/mri/m0wp1sub-409228_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-409228/mri/m0wp1sub-409228_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-409228/mri/mwp1sub-409228_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-409228/mri/mwp1sub-409228_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-409228/mri/p0sub-409228_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-409228/mri/p0sub-409228_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-409228/mri/t_sub-409228_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-409228/mri/t_sub-409228_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-409228/mri/t_sub-409228_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-409228/mri/t_sub-409228_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-409228/mri/wp0sub-409228_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-409228/mri/wp0sub-409228_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-409228/report/cat_sub-409228_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-409228/report/cat_sub-409228_acq-standard_T1w.mat (file)
unlock(ok): sub-409228/report/catreport_sub-409228_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-409228/report/catreport_sub-409228_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1711460/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-409228/label/catROI_sub-409228_acq-headmotion1_T1w.mat (file)
add(ok): sub-409228/label/catROI_sub-409228_acq-headmotion1_T1w.xml (file)
add(ok): sub-409228/mri/it_sub-409228_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-409228/mri/it_sub-409228_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-409228/mri/m0wp1sub-409228_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-409228/mri/mwp1sub-409228_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-409228/mri/p0sub-409228_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-409228/mri/t_sub-409228_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-409228/mri/t_sub-409228_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-409228/mri/wp0sub-409228_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-409228/report/cat_sub-409228_acq-headmotion1_T1w.mat (file)
add(ok): sub-409228/report/cat_sub-409228_acq-headmotion1_T1w.xml (file)
add(ok): sub-409228/report/catlog_sub-409228_acq-headmotion1_T1w.txt (file)
add(ok): sub-409228/report/catreport_sub-409228_acq-headmotion1_T1w.pdf (file)
add(ok): sub-409228/label/catROI_sub-409228_acq-headmotion2_T1w.mat (file)
add(ok): sub-409228/label/catROI_sub-409228_acq-standard_T1w.mat (file)
add(ok): sub-409228/mri/it_sub-409228_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-409228/mri/it_sub-409228_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-409228/mri/it_sub-409228_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-409228/mri/it_sub-409228_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-409228/mri/m0wp1sub-409228_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-409228/mri/m0wp1sub-409228_acq-standard_T1w.nii.gz (file)
add(ok): sub-409228/mri/mwp1sub-409228_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-409228/mri/mwp1sub-409228_acq-standard_T1w.nii.gz (file)
add(ok): sub-409228/mri/p0sub-409228_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-409228/mri/p0sub-409228_acq-standard_T1w.nii.gz (file)
add(ok): sub-409228/mri/t_sub-409228_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-409228/mri/t_sub-409228_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-409228/mri/t_sub-409228_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-409228/mri/t_sub-409228_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-409228/mri/wp0sub-409228_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-409228/mri/wp0sub-409228_acq-standard_T1w.nii.gz (file)
add(ok): sub-409228/report/cat_sub-409228_acq-headmotion2_T1w.mat (file)
add(ok): sub-409228/report/cat_sub-409228_acq-standard_T1w.mat (file)
add(ok): sub-409228/report/catreport_sub-409228_acq-headmotion2_T1w.pdf (file)
add(ok): sub-409228/report/catreport_sub-409228_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-409228/label/catROI_sub-409228_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/label/catROI_sub-409228_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/label/catROI_sub-409228_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/it_sub-409228_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/it_sub-409228_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/it_sub-409228_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/it_sub-409228_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/it_sub-409228_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/it_sub-409228_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/m0wp1sub-409228_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/m0wp1sub-409228_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/m0wp1sub-409228_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/mwp1sub-409228_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/mwp1sub-409228_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/mwp1sub-409228_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/p0sub-409228_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/p0sub-409228_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/p0sub-409228_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/t_sub-409228_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/t_sub-409228_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/t_sub-409228_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/t_sub-409228_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/t_sub-409228_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/t_sub-409228_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/wp0sub-409228_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/wp0sub-409228_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-409228/mri/wp0sub-409228_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-409228/report/cat_sub-409228_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/report/cat_sub-409228_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/report/cat_sub-409228_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-409228/report/catreport_sub-409228_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-409228/report/catreport_sub-409228_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-409228/report/catreport_sub-409228_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000645 seconds
flock: executing git
SUCCESS