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ds003416-mriqc/logs/sub-cIVs045_10066493.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

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install(ok): /var/lib/condor/execute/dir_3951153/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3951153/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3951153/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_3951153/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:56:31 | IMPORTANT | mriqc | Extracting metadata and entities for 2 input runs of modality 't1w'...
2025-10-09 21:56:31 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.00 GB [maximum|average].
2025-10-09 21:56:31 | IMPORTANT | mriqc | Extracting metadata and entities for 12 input runs of modality 'dwi'...
2025-10-09 21:56:31 | WARNING | nipype.workflow | 4 cannot be processed (too short or too long)
2025-10-09 21:56:31 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:56:31 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215629_b695f02c-210a-4e70-8e0d-b0b485e3ac21.toml.
2025-10-09 21:56:36 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:56:37 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:56:37 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 8 NIfTI files..
2025-10-09 21:56:38 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 2 NIfTI files..
2025-10-09 21:56:42 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:56:47 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:56:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/45040a642d31c2defd42b2ebd803b38be8ce15ee/conform".
2025-10-09 21:56:47 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:56:47 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.268745s.
2025-10-09 21:56:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/dbf3d7ae76486da36412c95c05f293d62e3ac335/conform".
2025-10-09 21:56:49 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:56:50 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.627658s.
2025-10-09 21:56:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/sanitize".
2025-10-09 21:56:51 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:52 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.961534s.
2025-10-09 21:56:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/load_bmat".
2025-10-09 21:56:53 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:56:53 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.17965s.
2025-10-09 21:56:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/provenance".
2025-10-09 21:56:55 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:56:55 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.019478s.
2025-10-09 21:56:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/sanitize".
2025-10-09 21:56:55 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:56 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.790043s.
2025-10-09 21:56:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/load_bmat".
2025-10-09 21:56:57 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:56:57 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.02292s.
2025-10-09 21:56:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/provenance".
2025-10-09 21:56:59 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:56:59 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.019411s.
2025-10-09 21:56:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/071d8deeb2d091eac016f995fc8bff2c669d0e49/sanitize".
2025-10-09 21:56:59 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:00 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.0959430000000001s.
2025-10-09 21:57:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/071d8deeb2d091eac016f995fc8bff2c669d0e49/load_bmat".
2025-10-09 21:57:01 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:01 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.025064s.
2025-10-09 21:57:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/071d8deeb2d091eac016f995fc8bff2c669d0e49/provenance".
2025-10-09 21:57:03 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:03 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.024918s.
2025-10-09 21:57:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/411f16487dc24faf5936eba4b29818de8762d05c/sanitize".
2025-10-09 21:57:03 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:04 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.989351s.
2025-10-09 21:57:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/411f16487dc24faf5936eba4b29818de8762d05c/load_bmat".
2025-10-09 21:57:05 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:05 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023678s.
2025-10-09 21:57:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/411f16487dc24faf5936eba4b29818de8762d05c/provenance".
2025-10-09 21:57:07 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:07 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.024925s.
2025-10-09 21:57:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/sanitize".
2025-10-09 21:57:07 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:08 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.819785s.
2025-10-09 21:57:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/load_bmat".
2025-10-09 21:57:09 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:09 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023985s.
2025-10-09 21:57:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/provenance".
2025-10-09 21:57:11 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:11 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.019831s.
2025-10-09 21:57:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/sanitize".
2025-10-09 21:57:11 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:12 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.783851s.
2025-10-09 21:57:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/load_bmat".
2025-10-09 21:57:13 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:13 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023544s.
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/provenance".
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.019798s.
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/03d9bf0bf69416550dc9955b349e33db6439094a/sanitize".
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:16 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.036321s.
2025-10-09 21:57:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/03d9bf0bf69416550dc9955b349e33db6439094a/load_bmat".
2025-10-09 21:57:17 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:17 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023712s.
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/03d9bf0bf69416550dc9955b349e33db6439094a/provenance".
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.025371s.
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/sanitize".
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:20 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.012045s.
2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/load_bmat".
2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024117s.
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/provenance".
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.025272s.
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/pre_clip".
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:57:32 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 8.666874s.
2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/45040a642d31c2defd42b2ebd803b38be8ce15ee/RotationMask".
2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:57:34 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.890568s.
2025-10-09 21:57:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/PlotMosaicNoise".
2025-10-09 21:57:35 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:57:40 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.250696s.
2025-10-09 21:57:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/dbf3d7ae76486da36412c95c05f293d62e3ac335/pre_clip".
2025-10-09 21:57:41 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 9.830733s.
2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/dbf3d7ae76486da36412c95c05f293d62e3ac335/RotationMask".
2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:57:52 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.901461s.
2025-10-09 21:57:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/dbf3d7ae76486da36412c95c05f293d62e3ac335/PlotMosaicNoise".
2025-10-09 21:57:53 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:57:58 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.043087s.
2025-10-09 21:57:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/piesno".
2025-10-09 21:57:59 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:00 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.957679s.
2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/shells".
2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000677s.
2025-10-09 21:58:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/piesno".
2025-10-09 21:58:03 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.929682s.
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/shells".
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000632s.
2025-10-09 21:58:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/071d8deeb2d091eac016f995fc8bff2c669d0e49/piesno".
2025-10-09 21:58:07 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.248245s.
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/071d8deeb2d091eac016f995fc8bff2c669d0e49/shells".
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000698s.
2025-10-09 21:58:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/411f16487dc24faf5936eba4b29818de8762d05c/piesno".
2025-10-09 21:58:11 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.259153s.
2025-10-09 21:58:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/411f16487dc24faf5936eba4b29818de8762d05c/shells".
2025-10-09 21:58:13 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:13 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.00069s.
2025-10-09 21:58:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/piesno".
2025-10-09 21:58:15 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.890842s.
2025-10-09 21:58:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/shells".
2025-10-09 21:58:17 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:17 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000646s.
2025-10-09 21:58:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/piesno".
2025-10-09 21:58:19 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.897182s.
2025-10-09 21:58:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/shells".
2025-10-09 21:58:21 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:21 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000629s.
2025-10-09 21:58:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/03d9bf0bf69416550dc9955b349e33db6439094a/piesno".
2025-10-09 21:58:23 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.2050130000000001s.
2025-10-09 21:58:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/03d9bf0bf69416550dc9955b349e33db6439094a/shells".
2025-10-09 21:58:25 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:25 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000939s.
2025-10-09 21:58:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/piesno".
2025-10-09 21:58:27 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.216668s.
2025-10-09 21:58:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/shells".
2025-10-09 21:58:29 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:29 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000712s.
2025-10-09 21:58:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/pre_n4".
2025-10-09 21:58:31 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:00:34 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 122.623306s.
2025-10-09 22:00:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/ds_report_background".
2025-10-09 22:00:35 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:00:35 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.008352s.
2025-10-09 22:00:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/dbf3d7ae76486da36412c95c05f293d62e3ac335/pre_n4".
2025-10-09 22:00:35 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:02:39 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 123.562888s.
2025-10-09 22:02:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/dbf3d7ae76486da36412c95c05f293d62e3ac335/ds_report_background".
2025-10-09 22:02:39 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:02:39 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.004845s.
2025-10-09 22:02:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/dwi_ref".
2025-10-09 22:02:39 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:40 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.535465s.
2025-10-09 22:02:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/get_lowb".
2025-10-09 22:02:41 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:41 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.385365s.
2025-10-09 22:02:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/dwi_ref".
2025-10-09 22:02:43 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:44 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.508838s.
2025-10-09 22:02:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/get_lowb".
2025-10-09 22:02:45 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:45 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.35172s.
2025-10-09 22:02:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/071d8deeb2d091eac016f995fc8bff2c669d0e49/dwi_ref".
2025-10-09 22:02:47 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:48 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.619818s.
2025-10-09 22:02:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/071d8deeb2d091eac016f995fc8bff2c669d0e49/get_lowb".
2025-10-09 22:02:49 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:50 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.477888s.
2025-10-09 22:02:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/411f16487dc24faf5936eba4b29818de8762d05c/dwi_ref".
2025-10-09 22:02:51 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:52 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.63771s.
2025-10-09 22:02:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/411f16487dc24faf5936eba4b29818de8762d05c/get_lowb".
2025-10-09 22:02:53 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:53 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.42601s.
2025-10-09 22:02:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/dwi_ref".
2025-10-09 22:02:55 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:56 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.529808s.
2025-10-09 22:02:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/get_lowb".
2025-10-09 22:02:57 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:57 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.390293s.
2025-10-09 22:02:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/dwi_ref".
2025-10-09 22:02:59 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:00 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.522454s.
2025-10-09 22:03:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/get_lowb".
2025-10-09 22:03:01 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:01 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.326513s.
2025-10-09 22:03:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/03d9bf0bf69416550dc9955b349e33db6439094a/dwi_ref".
2025-10-09 22:03:03 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:04 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.642683s.
2025-10-09 22:03:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/03d9bf0bf69416550dc9955b349e33db6439094a/get_lowb".
2025-10-09 22:03:05 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:05 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.431s.
2025-10-09 22:03:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/dwi_ref".
2025-10-09 22:03:07 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:08 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.641s.
2025-10-09 22:03:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/get_lowb".
2025-10-09 22:03:09 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:09 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.406632s.
2025-10-09 22:03:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/synthstrip".
2025-10-09 22:03:11 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:04:36 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 85.105745s.
2025-10-09 22:04:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/dbf3d7ae76486da36412c95c05f293d62e3ac335/synthstrip".
2025-10-09 22:04:37 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:05:46 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 68.636455s.
2025-10-09 22:05:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/pre_clip".
2025-10-09 22:05:47 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:05:48 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.611814s.
2025-10-09 22:05:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/SharpenEPI".
2025-10-09 22:05:49 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:56 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.082025s.
2025-10-09 22:05:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/hmc_b0".
2025-10-09 22:05:57 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:06:17 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 19.71988s.
2025-10-09 22:06:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/pre_clip".
2025-10-09 22:06:17 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:06:18 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.615024s.
2025-10-09 22:06:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/SharpenEPI".
2025-10-09 22:06:19 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:26 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.298198s.
2025-10-09 22:06:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/hmc_b0".
2025-10-09 22:06:27 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:06:47 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 19.464004s.
2025-10-09 22:06:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/pre_clip".
2025-10-09 22:06:47 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:06:48 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.604217s.
2025-10-09 22:06:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/071d8deeb2d091eac016f995fc8bff2c669d0e49/SharpenEPI".
2025-10-09 22:06:49 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:56 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.164935s.
2025-10-09 22:06:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/071d8deeb2d091eac016f995fc8bff2c669d0e49/hmc_b0".
2025-10-09 22:06:57 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:22 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 24.396535s.
2025-10-09 22:07:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/411f16487dc24faf5936eba4b29818de8762d05c/pre_clip".
2025-10-09 22:07:23 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:24 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.61793s.
2025-10-09 22:07:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/411f16487dc24faf5936eba4b29818de8762d05c/SharpenEPI".
2025-10-09 22:07:25 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:32 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.230554s.
2025-10-09 22:07:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/411f16487dc24faf5936eba4b29818de8762d05c/hmc_b0".
2025-10-09 22:07:33 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:57 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 24.305191s.
2025-10-09 22:07:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/pre_clip".
2025-10-09 22:07:59 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:00 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.617622s.
2025-10-09 22:08:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/SharpenEPI".
2025-10-09 22:08:01 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:08 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.187092s.
2025-10-09 22:08:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/hmc_b0".
2025-10-09 22:08:09 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:29 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 19.36065s.
2025-10-09 22:08:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/pre_clip".
2025-10-09 22:08:29 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:30 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.591205s.
2025-10-09 22:08:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/SharpenEPI".
2025-10-09 22:08:31 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:38 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.088124s.
2025-10-09 22:08:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/hmc_b0".
2025-10-09 22:08:39 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:58 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 19.228299s.
2025-10-09 22:08:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/03d9bf0bf69416550dc9955b349e33db6439094a/pre_clip".
2025-10-09 22:08:59 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:09:00 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.594565s.
2025-10-09 22:09:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/03d9bf0bf69416550dc9955b349e33db6439094a/SharpenEPI".
2025-10-09 22:09:01 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:08 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.132802s.
2025-10-09 22:09:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/03d9bf0bf69416550dc9955b349e33db6439094a/hmc_b0".
2025-10-09 22:09:09 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:33 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 24.096017s.
2025-10-09 22:09:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/pre_clip".
2025-10-09 22:09:35 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:09:36 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.612131s.
2025-10-09 22:09:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/SharpenEPI".
2025-10-09 22:09:37 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:44 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.191038s.
2025-10-09 22:09:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/hmc_b0".
2025-10-09 22:09:45 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:10:10 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 24.377941s.
2025-10-09 22:10:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/post_n4".
2025-10-09 22:10:11 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:37 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 25.665622s.
2025-10-09 22:10:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/45040a642d31c2defd42b2ebd803b38be8ce15ee/smoothness".
2025-10-09 22:10:37 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:10:42 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 4.716972s.
2025-10-09 22:10:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/PlotMosaicZoomed".
2025-10-09 22:10:43 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:10:48 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 4.52149s.
2025-10-09 22:10:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/PlotBrainmask".
2025-10-09 22:10:49 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:10:53 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.695075s.
2025-10-09 22:10:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/dbf3d7ae76486da36412c95c05f293d62e3ac335/post_n4".
2025-10-09 22:10:53 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:19 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 25.737434s.
2025-10-09 22:11:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/dbf3d7ae76486da36412c95c05f293d62e3ac335/smoothness".
2025-10-09 22:11:19 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:11:24 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 4.889358s.
2025-10-09 22:11:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/dbf3d7ae76486da36412c95c05f293d62e3ac335/PlotMosaicZoomed".
2025-10-09 22:11:25 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:11:30 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 4.70224s.
2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/dbf3d7ae76486da36412c95c05f293d62e3ac335/PlotBrainmask".
2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:11:35 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.582846s.
2025-10-09 22:11:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/pre_n4".
2025-10-09 22:11:35 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:42 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.062404s.
2025-10-09 22:11:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/pre_n4".
2025-10-09 22:11:43 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:50 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.053935s.
2025-10-09 22:11:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/pre_n4".
2025-10-09 22:11:51 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:58 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.04925s.
2025-10-09 22:11:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/411f16487dc24faf5936eba4b29818de8762d05c/pre_n4".
2025-10-09 22:11:59 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:06 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.075037s.
2025-10-09 22:12:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/pre_n4".
2025-10-09 22:12:07 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:14 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.058181s.
2025-10-09 22:12:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/pre_n4".
2025-10-09 22:12:15 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:22 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.042162s.
2025-10-09 22:12:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/03d9bf0bf69416550dc9955b349e33db6439094a/pre_n4".
2025-10-09 22:12:23 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:30 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.072132s.
2025-10-09 22:12:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/pre_n4".
2025-10-09 22:12:31 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:38 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.072145s.
2025-10-09 22:12:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/final_masked".
2025-10-09 22:12:39 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:12:40 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.280445s.
2025-10-09 22:12:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/SpatialNormalization".
2025-10-09 22:12:41 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:12:42 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:13:56 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:13:56 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:14:12 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:14:14 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:14:14 | INFO | niworkflows | Generating visual report
2025-10-09 22:14:32 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 110.257948s.
2025-10-09 22:14:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/ds_report_zoomed".
2025-10-09 22:14:33 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:14:33 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004993s.
2025-10-09 22:14:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/ds_report_bmask".
2025-10-09 22:14:33 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:14:33 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.00482s.
2025-10-09 22:14:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/dbf3d7ae76486da36412c95c05f293d62e3ac335/final_masked".
2025-10-09 22:14:34 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:14:34 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.297627s.
2025-10-09 22:14:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/dbf3d7ae76486da36412c95c05f293d62e3ac335/SpatialNormalization".
2025-10-09 22:14:35 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:14:36 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:15:51 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/dbf3d7ae76486da36412c95c05f293d62e3ac335/SpatialNormalization/stderr.nipype-init).
2025-10-09 22:15:51 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:15:51 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/dbf3d7ae76486da36412c95c05f293d62e3ac335/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/dbf3d7ae76486da36412c95c05f293d62e3ac335/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/dbf3d7ae76486da36412c95c05f293d62e3ac335/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/dbf3d7ae76486da36412c95c05f293d62e3ac335/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/dbf3d7ae76486da36412c95c05f293d62e3ac335/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:16:08 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:16:09 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/dbf3d7ae76486da36412c95c05f293d62e3ac335/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/dbf3d7ae76486da36412c95c05f293d62e3ac335/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:16:09 | INFO | niworkflows | Generating visual report
2025-10-09 22:16:27 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 111.540265s.
2025-10-09 22:16:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/dbf3d7ae76486da36412c95c05f293d62e3ac335/ds_report_zoomed".
2025-10-09 22:16:27 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:16:27 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.008566s.
2025-10-09 22:16:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/dbf3d7ae76486da36412c95c05f293d62e3ac335/ds_report_bmask".
2025-10-09 22:16:28 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:16:28 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.006741s.
2025-10-09 22:16:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/synthstrip".
2025-10-09 22:16:28 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:17:09 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 41.204217s.
2025-10-09 22:17:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/synthstrip".
2025-10-09 22:17:09 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:17:51 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 41.151947s.
2025-10-09 22:17:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/synthstrip".
2025-10-09 22:17:51 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:18:34 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 42.150748s.
2025-10-09 22:18:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/411f16487dc24faf5936eba4b29818de8762d05c/synthstrip".
2025-10-09 22:18:35 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:19:17 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 41.979907s.
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/synthstrip".
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:20:01 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 41.72051s.
2025-10-09 22:20:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/synthstrip".
2025-10-09 22:20:02 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:20:44 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 42.215515s.
2025-10-09 22:20:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/03d9bf0bf69416550dc9955b349e33db6439094a/synthstrip".
2025-10-09 22:20:46 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:21:27 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 41.726266s.
2025-10-09 22:21:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/synthstrip".
2025-10-09 22:21:28 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:22:09 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 41.324824s.
2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/ds_report_norm".
2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005102s.
2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/dbf3d7ae76486da36412c95c05f293d62e3ac335/ds_report_norm".
2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005487s.
2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/post_n4".
2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:22:12 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.511155s.
2025-10-09 22:22:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/sp_mask".
2025-10-09 22:22:14 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:22:14 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.671366s.
2025-10-09 22:22:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/drift".
2025-10-09 22:22:16 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:22:16 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9987, 0.9938, 1.0028, 1.0009, 0.9947, 0.9992.
2025-10-09 22:22:17 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.771287s.
2025-10-09 22:22:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/EPI2MNI".
2025-10-09 22:22:18 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:22:18 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:22:45 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/EPI2MNI/stderr.nipype-init).
2025-10-09 22:22:45 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:22:45 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/SharpenEPI/sub-cIVs045_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-115_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/SharpenEPI/sub-cIVs045_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-115_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/SharpenEPI/sub-cIVs045_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-115_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:23:54 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:23:54 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:23:54 | INFO | niworkflows | Generating visual report
2025-10-09 22:24:11 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 113.387605s.
2025-10-09 22:24:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/post_n4".
2025-10-09 22:24:12 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:24:14 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.450362s.
2025-10-09 22:24:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/sp_mask".
2025-10-09 22:24:16 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:24:16 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.616504s.
2025-10-09 22:24:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/drift".
2025-10-09 22:24:18 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:24:18 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9982, 0.9959, 0.9982, 0.9993, 1.0008, 0.9982.
2025-10-09 22:24:19 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.500216s.
2025-10-09 22:24:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/EPI2MNI".
2025-10-09 22:24:20 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:24:20 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:24:47 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:24:47 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/SharpenEPI/sub-cIVs045_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-218_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/SharpenEPI/sub-cIVs045_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-218_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/SharpenEPI/sub-cIVs045_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-218_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:25:54 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:25:54 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:25:54 | INFO | niworkflows | Generating visual report
2025-10-09 22:26:10 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 110.85307s.
2025-10-09 22:26:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/post_n4".
2025-10-09 22:26:12 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:26:14 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.38167s.
2025-10-09 22:26:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/071d8deeb2d091eac016f995fc8bff2c669d0e49/sp_mask".
2025-10-09 22:26:16 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:26:17 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.88118s.
2025-10-09 22:26:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/071d8deeb2d091eac016f995fc8bff2c669d0e49/drift".
2025-10-09 22:26:18 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:26:18 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9912, 0.9928, 1.001, 0.9969, 0.9914, 0.9898, 0.9925, 0.9993.
2025-10-09 22:26:20 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.973698s.
2025-10-09 22:26:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/071d8deeb2d091eac016f995fc8bff2c669d0e49/EPI2MNI".
2025-10-09 22:26:22 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:26:22 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:26:50 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/071d8deeb2d091eac016f995fc8bff2c669d0e49/EPI2MNI/stderr.nipype-init).
2025-10-09 22:26:50 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:26:50 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/071d8deeb2d091eac016f995fc8bff2c669d0e49/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/071d8deeb2d091eac016f995fc8bff2c669d0e49/SharpenEPI/sub-cIVs045_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/071d8deeb2d091eac016f995fc8bff2c669d0e49/SharpenEPI/sub-cIVs045_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/071d8deeb2d091eac016f995fc8bff2c669d0e49/SharpenEPI/sub-cIVs045_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:27:56 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:27:56 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/071d8deeb2d091eac016f995fc8bff2c669d0e49/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:27:56 | INFO | niworkflows | Generating visual report
2025-10-09 22:28:13 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 111.553186s.
2025-10-09 22:28:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/411f16487dc24faf5936eba4b29818de8762d05c/post_n4".
2025-10-09 22:28:14 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:28:16 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.377573s.
2025-10-09 22:28:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/411f16487dc24faf5936eba4b29818de8762d05c/sp_mask".
2025-10-09 22:28:18 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:28:19 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.841849s.
2025-10-09 22:28:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/411f16487dc24faf5936eba4b29818de8762d05c/drift".
2025-10-09 22:28:20 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:28:20 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9935, 0.9963, 1.0031, 0.9905, 0.9978, 0.9897, 0.9986, 1.0017.
2025-10-09 22:28:22 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.8497810000000001s.
2025-10-09 22:28:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/411f16487dc24faf5936eba4b29818de8762d05c/EPI2MNI".
2025-10-09 22:28:22 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:28:22 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:28:49 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/411f16487dc24faf5936eba4b29818de8762d05c/EPI2MNI/stderr.nipype-init).
2025-10-09 22:28:49 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:28:49 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/411f16487dc24faf5936eba4b29818de8762d05c/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/411f16487dc24faf5936eba4b29818de8762d05c/SharpenEPI/sub-cIVs045_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/411f16487dc24faf5936eba4b29818de8762d05c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/411f16487dc24faf5936eba4b29818de8762d05c/SharpenEPI/sub-cIVs045_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/411f16487dc24faf5936eba4b29818de8762d05c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/411f16487dc24faf5936eba4b29818de8762d05c/SharpenEPI/sub-cIVs045_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/411f16487dc24faf5936eba4b29818de8762d05c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:29:53 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:29:53 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/411f16487dc24faf5936eba4b29818de8762d05c/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:29:53 | INFO | niworkflows | Generating visual report
2025-10-09 22:30:10 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 108.745306s.
2025-10-09 22:30:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/post_n4".
2025-10-09 22:30:12 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:30:14 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.388722s.
2025-10-09 22:30:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/sp_mask".
2025-10-09 22:30:16 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:30:16 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.586709s.
2025-10-09 22:30:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/drift".
2025-10-09 22:30:18 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:30:18 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9988, 0.995, 0.9998, 0.9999, 0.9981, 0.9971.
2025-10-09 22:30:19 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.498449s.
2025-10-09 22:30:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/EPI2MNI".
2025-10-09 22:30:20 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:30:20 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:30:48 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/EPI2MNI/stderr.nipype-init).
2025-10-09 22:30:48 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:30:48 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/SharpenEPI/sub-cIVs045_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/SharpenEPI/sub-cIVs045_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/SharpenEPI/sub-cIVs045_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:31:53 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:31:53 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:31:53 | INFO | niworkflows | Generating visual report
2025-10-09 22:32:10 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 110.695521s.
2025-10-09 22:32:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/post_n4".
2025-10-09 22:32:12 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:32:14 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.460586s.
2025-10-09 22:32:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/sp_mask".
2025-10-09 22:32:16 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:32:16 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.647483s.
2025-10-09 22:32:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/drift".
2025-10-09 22:32:18 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:32:18 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9994, 0.9972, 1.0029, 0.9996, 0.9948, 0.9997.
2025-10-09 22:32:19 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.482075s.
2025-10-09 22:32:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/EPI2MNI".
2025-10-09 22:32:20 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:32:20 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:32:46 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/EPI2MNI/stderr.nipype-init).
2025-10-09 22:32:46 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:32:46 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/SharpenEPI/sub-cIVs045_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/SharpenEPI/sub-cIVs045_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/SharpenEPI/sub-cIVs045_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:33:53 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:33:53 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:33:53 | INFO | niworkflows | Generating visual report
2025-10-09 22:34:10 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 110.123397s.
2025-10-09 22:34:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/03d9bf0bf69416550dc9955b349e33db6439094a/post_n4".
2025-10-09 22:34:12 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:34:14 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.412404s.
2025-10-09 22:34:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/03d9bf0bf69416550dc9955b349e33db6439094a/sp_mask".
2025-10-09 22:34:16 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:34:17 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.900065s.
2025-10-09 22:34:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/03d9bf0bf69416550dc9955b349e33db6439094a/drift".
2025-10-09 22:34:18 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:34:18 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9974, 0.9943, 0.9994, 0.9977, 0.9933, 0.9919, 0.994, 0.9959.
2025-10-09 22:34:20 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.9165s.
2025-10-09 22:34:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/03d9bf0bf69416550dc9955b349e33db6439094a/EPI2MNI".
2025-10-09 22:34:22 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:34:22 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:34:48 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/03d9bf0bf69416550dc9955b349e33db6439094a/EPI2MNI/stderr.nipype-init).
2025-10-09 22:34:48 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:34:48 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/03d9bf0bf69416550dc9955b349e33db6439094a/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/03d9bf0bf69416550dc9955b349e33db6439094a/SharpenEPI/sub-cIVs045_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/03d9bf0bf69416550dc9955b349e33db6439094a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/03d9bf0bf69416550dc9955b349e33db6439094a/SharpenEPI/sub-cIVs045_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/03d9bf0bf69416550dc9955b349e33db6439094a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/03d9bf0bf69416550dc9955b349e33db6439094a/SharpenEPI/sub-cIVs045_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/03d9bf0bf69416550dc9955b349e33db6439094a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:35:54 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:35:54 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/03d9bf0bf69416550dc9955b349e33db6439094a/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:35:54 | INFO | niworkflows | Generating visual report
2025-10-09 22:36:11 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 109.155633s.
2025-10-09 22:36:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/post_n4".
2025-10-09 22:36:12 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:36:14 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.412849s.
2025-10-09 22:36:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/sp_mask".
2025-10-09 22:36:16 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:36:17 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.966548s.
2025-10-09 22:36:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/drift".
2025-10-09 22:36:18 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:36:18 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9957, 0.994, 1.0018, 0.9991, 0.9975, 0.9941, 0.9995, 0.9974.
2025-10-09 22:36:20 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.9168129999999999s.
2025-10-09 22:36:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/EPI2MNI".
2025-10-09 22:36:22 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:36:22 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:36:50 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:36:50 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/SharpenEPI/sub-cIVs045_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/SharpenEPI/sub-cIVs045_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/SharpenEPI/sub-cIVs045_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:37:57 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:37:57 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:37:57 | INFO | niworkflows | Generating visual report
2025-10-09 22:38:14 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 111.707212s.
2025-10-09 22:38:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/final_masked".
2025-10-09 22:38:14 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:38:14 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.034227s.
2025-10-09 22:38:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/dwidenoise".
2025-10-09 22:38:16 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:38:37 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 21.363494s.
2025-10-09 22:38:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/ResampleSegmentation".
2025-10-09 22:38:38 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:38:42 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.658549s.
2025-10-09 22:38:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/final_masked".
2025-10-09 22:38:42 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:38:42 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.03382s.
2025-10-09 22:38:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/dwidenoise".
2025-10-09 22:38:44 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:39:05 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 21.364445s.
2025-10-09 22:39:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/ResampleSegmentation".
2025-10-09 22:39:06 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:39:10 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.604255s.
2025-10-09 22:39:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/final_masked".
2025-10-09 22:39:10 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:39:10 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.033592s.
2025-10-09 22:39:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/071d8deeb2d091eac016f995fc8bff2c669d0e49/dwidenoise".
2025-10-09 22:39:12 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:39:50 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 38.073695s.
2025-10-09 22:39:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/071d8deeb2d091eac016f995fc8bff2c669d0e49/ResampleSegmentation".
2025-10-09 22:39:52 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:39:56 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.642135s.
2025-10-09 22:39:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/411f16487dc24faf5936eba4b29818de8762d05c/final_masked".
2025-10-09 22:39:56 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:39:56 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.03488s.
2025-10-09 22:39:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/411f16487dc24faf5936eba4b29818de8762d05c/dwidenoise".
2025-10-09 22:39:58 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:40:37 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 38.510506s.
2025-10-09 22:40:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/411f16487dc24faf5936eba4b29818de8762d05c/ResampleSegmentation".
2025-10-09 22:40:38 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.553041s.
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/final_masked".
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.034104s.
2025-10-09 22:40:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/dwidenoise".
2025-10-09 22:40:44 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:41:06 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 21.494497s.
2025-10-09 22:41:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/ResampleSegmentation".
2025-10-09 22:41:06 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:41:10 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.606389s.
2025-10-09 22:41:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/final_masked".
2025-10-09 22:41:10 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:41:10 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.034205s.
2025-10-09 22:41:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/dwidenoise".
2025-10-09 22:41:12 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:41:34 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 21.650434s.
2025-10-09 22:41:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/ResampleSegmentation".
2025-10-09 22:41:34 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:41:38 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.554545s.
2025-10-09 22:41:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/03d9bf0bf69416550dc9955b349e33db6439094a/final_masked".
2025-10-09 22:41:38 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:41:38 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.034816s.
2025-10-09 22:41:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/03d9bf0bf69416550dc9955b349e33db6439094a/dwidenoise".
2025-10-09 22:41:40 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:42:19 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 38.659966s.
2025-10-09 22:42:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/03d9bf0bf69416550dc9955b349e33db6439094a/ResampleSegmentation".
2025-10-09 22:42:20 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:42:24 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.575691s.
2025-10-09 22:42:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/final_masked".
2025-10-09 22:42:24 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:42:24 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.034738s.
2025-10-09 22:42:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/dwidenoise".
2025-10-09 22:42:26 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:43:05 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 38.878054s.
2025-10-09 22:43:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/ResampleSegmentation".
2025-10-09 22:43:06 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:43:10 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.545759s.
2025-10-09 22:43:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/dwimodel".
2025-10-09 22:43:10 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:43:14 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.941244s.
2025-10-09 22:43:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/estimate_sigma".
2025-10-09 22:43:16 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:16 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.037333s.
2025-10-09 22:43:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/get_wm".
2025-10-09 22:43:18 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:18 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.049279s.
2025-10-09 22:43:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/dwimodel".
2025-10-09 22:43:20 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:43:24 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.885233s.
2025-10-09 22:43:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/estimate_sigma".
2025-10-09 22:43:26 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:26 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.037713s.
2025-10-09 22:43:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/get_wm".
2025-10-09 22:43:28 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:28 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034282s.
2025-10-09 22:43:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/071d8deeb2d091eac016f995fc8bff2c669d0e49/dwimodel".
2025-10-09 22:43:30 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:43:34 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.367729s.
2025-10-09 22:43:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/071d8deeb2d091eac016f995fc8bff2c669d0e49/estimate_sigma".
2025-10-09 22:43:36 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:36 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.037255s.
2025-10-09 22:43:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/get_wm".
2025-10-09 22:43:38 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:38 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034953s.
2025-10-09 22:43:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/411f16487dc24faf5936eba4b29818de8762d05c/dwimodel".
2025-10-09 22:43:40 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:43:44 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.401851s.
2025-10-09 22:43:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/411f16487dc24faf5936eba4b29818de8762d05c/estimate_sigma".
2025-10-09 22:43:46 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:46 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038214s.
2025-10-09 22:43:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/411f16487dc24faf5936eba4b29818de8762d05c/get_wm".
2025-10-09 22:43:48 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:48 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.047225s.
2025-10-09 22:43:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/dwimodel".
2025-10-09 22:43:50 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:43:54 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.905866s.
2025-10-09 22:43:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/estimate_sigma".
2025-10-09 22:43:56 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:56 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038305s.
2025-10-09 22:43:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/get_wm".
2025-10-09 22:43:58 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:43:58 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034924s.
2025-10-09 22:44:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/dwimodel".
2025-10-09 22:44:00 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:44:04 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.916445s.
2025-10-09 22:44:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/estimate_sigma".
2025-10-09 22:44:06 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:44:06 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.037574s.
2025-10-09 22:44:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/get_wm".
2025-10-09 22:44:08 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:44:08 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.033954s.
2025-10-09 22:44:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/03d9bf0bf69416550dc9955b349e33db6439094a/dwimodel".
2025-10-09 22:44:10 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:44:14 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.38521s.
2025-10-09 22:44:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/03d9bf0bf69416550dc9955b349e33db6439094a/estimate_sigma".
2025-10-09 22:44:16 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:44:16 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036791s.
2025-10-09 22:44:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/03d9bf0bf69416550dc9955b349e33db6439094a/get_wm".
2025-10-09 22:44:18 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:44:18 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034902s.
2025-10-09 22:44:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/dwimodel".
2025-10-09 22:44:20 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:44:25 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.419749s.
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/estimate_sigma".
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:44:26 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038075s.
2025-10-09 22:44:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/get_wm".
2025-10-09 22:44:28 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:44:28 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034145s.
2025-10-09 22:44:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/cc_mask".
2025-10-09 22:44:30 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:44:31 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.52923s.
2025-10-09 22:44:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/mosaic_fa".
2025-10-09 22:44:32 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:44:33 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.301421s.
2025-10-09 22:44:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/mosaic_md".
2025-10-09 22:44:34 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:44:35 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.406714s.
2025-10-09 22:44:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/plot_heatmap".
2025-10-09 22:44:36 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:44:38 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.541355s.
2025-10-09 22:44:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/cc_mask".
2025-10-09 22:44:38 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:44:39 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.500943s.
2025-10-09 22:44:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/mosaic_fa".
2025-10-09 22:44:40 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:44:41 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.301747s.
2025-10-09 22:44:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/mosaic_md".
2025-10-09 22:44:42 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:44:44 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.582611s.
2025-10-09 22:44:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/plot_heatmap".
2025-10-09 22:44:44 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:44:45 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.138128s.
2025-10-09 22:44:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/071d8deeb2d091eac016f995fc8bff2c669d0e49/cc_mask".
2025-10-09 22:44:46 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:44:47 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.500192s.
2025-10-09 22:44:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/mosaic_fa".
2025-10-09 22:44:48 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:44:50 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.402024s.
2025-10-09 22:44:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/mosaic_md".
2025-10-09 22:44:50 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:44:52 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.492372s.
2025-10-09 22:44:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/plot_heatmap".
2025-10-09 22:44:52 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:44:54 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.462533s.
2025-10-09 22:44:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/411f16487dc24faf5936eba4b29818de8762d05c/cc_mask".
2025-10-09 22:44:54 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:44:55 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.527624s.
2025-10-09 22:44:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/411f16487dc24faf5936eba4b29818de8762d05c/mosaic_fa".
2025-10-09 22:44:56 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:44:57 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.377396s.
2025-10-09 22:44:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/411f16487dc24faf5936eba4b29818de8762d05c/mosaic_md".
2025-10-09 22:44:58 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:45:00 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.697972s.
2025-10-09 22:45:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/411f16487dc24faf5936eba4b29818de8762d05c/plot_heatmap".
2025-10-09 22:45:00 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:45:01 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.214722s.
2025-10-09 22:45:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/cc_mask".
2025-10-09 22:45:02 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:45:03 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.512691s.
2025-10-09 22:45:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/mosaic_fa".
2025-10-09 22:45:04 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:45:06 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.524604s.
2025-10-09 22:45:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/mosaic_md".
2025-10-09 22:45:06 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:45:08 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.757486s.
2025-10-09 22:45:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/plot_heatmap".
2025-10-09 22:45:08 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:45:09 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.1722730000000001s.
2025-10-09 22:45:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/cc_mask".
2025-10-09 22:45:10 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:45:11 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.504968s.
2025-10-09 22:45:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/mosaic_fa".
2025-10-09 22:45:12 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:45:14 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.511252s.
2025-10-09 22:45:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/mosaic_md".
2025-10-09 22:45:14 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:45:16 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.492993s.
2025-10-09 22:45:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/plot_heatmap".
2025-10-09 22:45:16 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:45:18 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.463504s.
2025-10-09 22:45:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/03d9bf0bf69416550dc9955b349e33db6439094a/cc_mask".
2025-10-09 22:45:18 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:45:19 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.533185s.
2025-10-09 22:45:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/03d9bf0bf69416550dc9955b349e33db6439094a/mosaic_fa".
2025-10-09 22:45:20 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:45:21 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.344989s.
2025-10-09 22:45:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/03d9bf0bf69416550dc9955b349e33db6439094a/mosaic_md".
2025-10-09 22:45:22 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:45:24 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.671169s.
2025-10-09 22:45:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/03d9bf0bf69416550dc9955b349e33db6439094a/plot_heatmap".
2025-10-09 22:45:24 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:45:25 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.227747s.
2025-10-09 22:45:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/cc_mask".
2025-10-09 22:45:26 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:45:27 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.530617s.
2025-10-09 22:45:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/mosaic_fa".
2025-10-09 22:45:28 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:45:30 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.6207099999999999s.
2025-10-09 22:45:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/mosaic_md".
2025-10-09 22:45:30 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:45:32 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.502182s.
2025-10-09 22:45:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/plot_heatmap".
2025-10-09 22:45:32 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:45:33 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.224512s.
2025-10-09 22:45:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/ds_report_fa".
2025-10-09 22:45:34 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:34 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004778s.
2025-10-09 22:45:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/ds_report_md".
2025-10-09 22:45:34 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:34 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004642s.
2025-10-09 22:45:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8454b1ae957f75b1fd4171e894dfaa21b2c19c0c/ds_report_hm".
2025-10-09 22:45:34 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:34 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004791s.
2025-10-09 22:45:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/ds_report_fa".
2025-10-09 22:45:34 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:34 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004647s.
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/ds_report_md".
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.00479s.
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7f972ee0c54f3d6159d6d7a8f6b123769bcf8bf7/ds_report_hm".
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004786s.
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/ds_report_fa".
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004665s.
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/ds_report_md".
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004791s.
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/071d8deeb2d091eac016f995fc8bff2c669d0e49/ds_report_hm".
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004752s.
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/411f16487dc24faf5936eba4b29818de8762d05c/ds_report_fa".
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004599s.
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/411f16487dc24faf5936eba4b29818de8762d05c/ds_report_md".
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004656s.
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/411f16487dc24faf5936eba4b29818de8762d05c/ds_report_hm".
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004716s.
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/ds_report_fa".
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004699s.
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/ds_report_md".
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004613s.
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b7fc3974e8f6e92f0945ec4859968fafe0e2901d/ds_report_hm".
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004622s.
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/ds_report_fa".
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.00459s.
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/ds_report_md".
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004662s.
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0000d6e0e5c540d5c38155df02b1e94bf45b3e2a/ds_report_hm".
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004649s.
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/03d9bf0bf69416550dc9955b349e33db6439094a/ds_report_fa".
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:36 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.00469s.
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/03d9bf0bf69416550dc9955b349e33db6439094a/ds_report_md".
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004725s.
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/03d9bf0bf69416550dc9955b349e33db6439094a/ds_report_hm".
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004683s.
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/ds_report_fa".
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004637s.
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/ds_report_md".
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005124s.
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c1f12a198e05ba4b4e2ec57e06a5f326db7d42d0/ds_report_hm".
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004635s.
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:45:37 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:45:46 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 8.911931s.
2025-10-09 22:45:47 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:45:47 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:45:56 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 8.772586s.
2025-10-09 22:45:57 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:45:57 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:46:06 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 8.776303s.
2025-10-09 22:46:07 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:46:07 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:46:07 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:46:07 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:46:07 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:46:07 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:46:07 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/45040a642d31c2defd42b2ebd803b38be8ce15ee/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:46:07 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:46:07 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:46:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/45040a642d31c2defd42b2ebd803b38be8ce15ee/Enhance".
2025-10-09 22:46:09 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:46:10 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.55429s.
2025-10-09 22:46:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/45040a642d31c2defd42b2ebd803b38be8ce15ee/format_tpm_names".
2025-10-09 22:46:11 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:46:13 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.79989s.
2025-10-09 22:46:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/45040a642d31c2defd42b2ebd803b38be8ce15ee/Grad".
2025-10-09 22:46:13 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:46:20 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 6.421354s.
2025-10-09 22:46:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/45040a642d31c2defd42b2ebd803b38be8ce15ee/apply_mask".
2025-10-09 22:46:21 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:46:22 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.30613s.
2025-10-09 22:46:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/45040a642d31c2defd42b2ebd803b38be8ce15ee/GradientThreshold".
2025-10-09 22:46:23 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:46:37 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 13.667253s.
2025-10-09 22:46:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/45040a642d31c2defd42b2ebd803b38be8ce15ee/segmentation".
2025-10-09 22:46:37 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:48:09 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 91.789858s.
2025-10-09 22:48:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/45040a642d31c2defd42b2ebd803b38be8ce15ee/ArtifactMask".
2025-10-09 22:48:09 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:48:15 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 6.042896s.
2025-10-09 22:48:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/PlotHeadmask".
2025-10-09 22:48:17 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:48:20 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 3.052686s.
2025-10-09 22:48:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/45040a642d31c2defd42b2ebd803b38be8ce15ee/harmonize".
2025-10-09 22:48:21 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:48:22 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.937245s.
2025-10-09 22:48:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/45040a642d31c2defd42b2ebd803b38be8ce15ee/PlotSegmentation".
2025-10-09 22:48:23 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:48:27 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 3.426063s.
2025-10-09 22:48:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/45040a642d31c2defd42b2ebd803b38be8ce15ee/provenance".
2025-10-09 22:48:27 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:48:27 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.050995s.
2025-10-09 22:48:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/45040a642d31c2defd42b2ebd803b38be8ce15ee/ComputeQI2".
2025-10-09 22:48:28 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:48:28 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.250318s.
2025-10-09 22:48:28 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:48:28 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/45040a642d31c2defd42b2ebd803b38be8ce15ee/ComputeQI2)
2025-10-09 22:48:28 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=239) crashed: /var/lib/condor/execute/dir_3951153/ds/logs/crash-20251009-224828-fhoffstaedter-ComputeQI2.a0-fa9ceed8-79ae-4c11-a5cf-1d521c6b40f2.txt
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx1/anat/sub-cIVs045_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx1/dwi/sub-cIVs045_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-114_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx1/dwi/sub-cIVs045_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx1/dwi/sub-cIVs045_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-115_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx1/dwi/sub-cIVs045_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-218_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx1/dwi/sub-cIVs045_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx1/dwi/sub-cIVs045_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx2/anat/sub-cIVs045_ses-s1Bx2_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx2/dwi/sub-cIVs045_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx2/dwi/sub-cIVs045_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx2/dwi/sub-cIVs045_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-114_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx2/dwi/sub-cIVs045_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx2/dwi/sub-cIVs045_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045/ses-s1Bx2/dwi/sub-cIVs045_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs045 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_3951153/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 16)
run (error: 1)
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