f.hoffstaedter/ds003416-mriqc
1
0
Fork 0
Code Pull requests Packages Activity
ds003416-mriqc/logs/sub-cIVs043_10066442.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

995 lines
191 KiB (Stored with Git Annex)
Text
Raw Permalink Blame History

This file contains invisible Unicode characters

This file contains invisible Unicode characters that are indistinguishable to humans but may be processed differently by a computer. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

install(ok): /var/lib/condor/execute/dir_470419/ds (dataset)
install(ok): /var/lib/condor/execute/dir_470419/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_470419/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_470419/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:57:41 | IMPORTANT | mriqc | Extracting metadata and entities for 2 input runs of modality 't1w'...
2025-10-09 21:57:41 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:57:41 | IMPORTANT | mriqc | Extracting metadata and entities for 12 input runs of modality 'dwi'...
2025-10-09 21:57:41 | WARNING | nipype.workflow | 4 cannot be processed (too short or too long)
2025-10-09 21:57:41 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:57:41 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215739_c8750317-36d7-45ee-bcbb-ad386b8f47c4.toml.
2025-10-09 21:57:46 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:57:47 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:57:47 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 8 NIfTI files..
2025-10-09 21:57:48 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 2 NIfTI files..
2025-10-09 21:57:53 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:57:57 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:57:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/91715e6cc6c3247e011dace044bdd89d9d948dff/conform".
2025-10-09 21:57:58 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:57:58 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.306039s.
2025-10-09 21:58:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/conform".
2025-10-09 21:58:00 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:58:00 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.71718s.
2025-10-09 21:58:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/2ee22958ce5b6c434b57df23136f2dd06aabc11e/load_bmat".
2025-10-09 21:58:02 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:02 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.183456s.
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/2ee22958ce5b6c434b57df23136f2dd06aabc11e/sanitize".
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.86483s.
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/2ee22958ce5b6c434b57df23136f2dd06aabc11e/provenance".
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.022277s.
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/load_bmat".
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.025042s.
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/sanitize".
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.823021s.
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/provenance".
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.021984s.
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/d806079e6692f254c53f0b64928e3556811424ec/load_bmat".
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.026088s.
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/d806079e6692f254c53f0b64928e3556811424ec/sanitize".
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:13 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.11132s.
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/d806079e6692f254c53f0b64928e3556811424ec/provenance".
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.027904s.
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/73c7f287adea4b73c842638db2dbccf45e29a115/load_bmat".
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024628s.
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/73c7f287adea4b73c842638db2dbccf45e29a115/sanitize".
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:17 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.120411s.
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/73c7f287adea4b73c842638db2dbccf45e29a115/provenance".
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.028208s.
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/2c1bde03b9b061bb5098a20d059317287621c008/load_bmat".
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.025402s.
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/2c1bde03b9b061bb5098a20d059317287621c008/sanitize".
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:21 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.859479s.
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/2c1bde03b9b061bb5098a20d059317287621c008/provenance".
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.022124s.
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/3a10b5748432141e866736ffdd7a45d9eec154f7/load_bmat".
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.025374s.
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/3a10b5748432141e866736ffdd7a45d9eec154f7/sanitize".
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 2.751039s.
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/3a10b5748432141e866736ffdd7a45d9eec154f7/provenance".
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.022258s.
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/5a79b63b2d4cc676b29cac2f192f8914690897ff/load_bmat".
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.029664s.
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/5a79b63b2d4cc676b29cac2f192f8914690897ff/sanitize".
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:31 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.140563s.
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/5a79b63b2d4cc676b29cac2f192f8914690897ff/provenance".
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.028729s.
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/load_bmat".
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.027765s.
2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/sanitize".
2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:35 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.140601s.
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/provenance".
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.02866s.
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/pre_clip".
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:58:47 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 11.067118s.
2025-10-09 21:58:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/91715e6cc6c3247e011dace044bdd89d9d948dff/RotationMask".
2025-10-09 21:58:48 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:58:49 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.847229s.
2025-10-09 21:58:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/PlotMosaicNoise".
2025-10-09 21:58:50 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:58:55 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.217064s.
2025-10-09 21:58:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/pre_clip".
2025-10-09 21:58:56 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:59:08 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 12.262956s.
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/RotationMask".
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:59:11 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.93514s.
2025-10-09 21:59:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/PlotMosaicNoise".
2025-10-09 21:59:12 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:59:18 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.982374s.
2025-10-09 21:59:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/2ee22958ce5b6c434b57df23136f2dd06aabc11e/shells".
2025-10-09 21:59:20 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:20 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000755s.
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/2ee22958ce5b6c434b57df23136f2dd06aabc11e/piesno".
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:23 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.042336s.
2025-10-09 21:59:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/shells".
2025-10-09 21:59:24 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:24 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000668s.
2025-10-09 21:59:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/piesno".
2025-10-09 21:59:26 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:27 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.020759s.
2025-10-09 21:59:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/d806079e6692f254c53f0b64928e3556811424ec/shells".
2025-10-09 21:59:28 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:28 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000758s.
2025-10-09 21:59:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/d806079e6692f254c53f0b64928e3556811424ec/piesno".
2025-10-09 21:59:30 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:31 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.375311s.
2025-10-09 21:59:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/73c7f287adea4b73c842638db2dbccf45e29a115/shells".
2025-10-09 21:59:32 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:32 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.001202s.
2025-10-09 21:59:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/73c7f287adea4b73c842638db2dbccf45e29a115/piesno".
2025-10-09 21:59:34 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:35 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.469019s.
2025-10-09 21:59:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/2c1bde03b9b061bb5098a20d059317287621c008/shells".
2025-10-09 21:59:36 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:36 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000818s.
2025-10-09 21:59:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/2c1bde03b9b061bb5098a20d059317287621c008/piesno".
2025-10-09 21:59:38 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:39 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.021856s.
2025-10-09 21:59:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/3a10b5748432141e866736ffdd7a45d9eec154f7/shells".
2025-10-09 21:59:40 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:40 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000727s.
2025-10-09 21:59:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/3a10b5748432141e866736ffdd7a45d9eec154f7/piesno".
2025-10-09 21:59:42 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:43 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.972502s.
2025-10-09 21:59:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/5a79b63b2d4cc676b29cac2f192f8914690897ff/shells".
2025-10-09 21:59:44 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:44 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000753s.
2025-10-09 21:59:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/5a79b63b2d4cc676b29cac2f192f8914690897ff/piesno".
2025-10-09 21:59:46 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:48 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 2.037078s.
2025-10-09 21:59:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/shells".
2025-10-09 21:59:50 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:50 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000787s.
2025-10-09 21:59:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/piesno".
2025-10-09 21:59:52 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:54 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.9381s.
2025-10-09 21:59:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/pre_n4".
2025-10-09 21:59:56 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:02:15 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 138.938509s.
2025-10-09 22:02:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/ds_report_background".
2025-10-09 22:02:16 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:02:16 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.009223s.
2025-10-09 22:02:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/pre_n4".
2025-10-09 22:02:16 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:04:37 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 141.208285s.
2025-10-09 22:04:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/ds_report_background".
2025-10-09 22:04:38 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:04:38 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.005255s.
2025-10-09 22:04:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/2ee22958ce5b6c434b57df23136f2dd06aabc11e/dwi_ref".
2025-10-09 22:04:38 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:39 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.615483s.
2025-10-09 22:04:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/2ee22958ce5b6c434b57df23136f2dd06aabc11e/get_lowb".
2025-10-09 22:04:40 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:04:40 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.376474s.
2025-10-09 22:04:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/dwi_ref".
2025-10-09 22:04:42 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:42 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.581307s.
2025-10-09 22:04:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/get_lowb".
2025-10-09 22:04:44 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:04:44 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.372389s.
2025-10-09 22:04:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/d806079e6692f254c53f0b64928e3556811424ec/dwi_ref".
2025-10-09 22:04:46 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:47 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.709226s.
2025-10-09 22:04:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/d806079e6692f254c53f0b64928e3556811424ec/get_lowb".
2025-10-09 22:04:48 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:04:48 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.451398s.
2025-10-09 22:04:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/73c7f287adea4b73c842638db2dbccf45e29a115/dwi_ref".
2025-10-09 22:04:50 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:51 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.731952s.
2025-10-09 22:04:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/73c7f287adea4b73c842638db2dbccf45e29a115/get_lowb".
2025-10-09 22:04:52 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:04:52 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.498425s.
2025-10-09 22:04:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/2c1bde03b9b061bb5098a20d059317287621c008/dwi_ref".
2025-10-09 22:04:54 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:54 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.606809s.
2025-10-09 22:04:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/2c1bde03b9b061bb5098a20d059317287621c008/get_lowb".
2025-10-09 22:04:56 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:04:56 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.398307s.
2025-10-09 22:04:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/3a10b5748432141e866736ffdd7a45d9eec154f7/dwi_ref".
2025-10-09 22:04:58 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:58 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.603217s.
2025-10-09 22:05:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/3a10b5748432141e866736ffdd7a45d9eec154f7/get_lowb".
2025-10-09 22:05:00 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:05:00 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.366271s.
2025-10-09 22:05:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/5a79b63b2d4cc676b29cac2f192f8914690897ff/dwi_ref".
2025-10-09 22:05:02 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:05:03 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.741063s.
2025-10-09 22:05:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/5a79b63b2d4cc676b29cac2f192f8914690897ff/get_lowb".
2025-10-09 22:05:04 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:05:04 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.456989s.
2025-10-09 22:05:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/dwi_ref".
2025-10-09 22:05:06 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:05:07 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.766954s.
2025-10-09 22:05:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/get_lowb".
2025-10-09 22:05:08 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:05:08 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.457002s.
2025-10-09 22:05:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/synthstrip".
2025-10-09 22:05:10 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:06:43 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 93.594085s.
2025-10-09 22:06:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/synthstrip".
2025-10-09 22:06:44 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:08:15 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 90.863374s.
2025-10-09 22:08:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/pre_clip".
2025-10-09 22:08:16 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:17 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.775562s.
2025-10-09 22:08:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2ee22958ce5b6c434b57df23136f2dd06aabc11e/SharpenEPI".
2025-10-09 22:08:18 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:26 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.234202s.
2025-10-09 22:08:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/2ee22958ce5b6c434b57df23136f2dd06aabc11e/hmc_b0".
2025-10-09 22:08:28 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:50 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 22.365921s.
2025-10-09 22:08:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/pre_clip".
2025-10-09 22:08:52 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:53 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.790947s.
2025-10-09 22:08:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/SharpenEPI".
2025-10-09 22:08:54 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:02 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.227335s.
2025-10-09 22:09:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/hmc_b0".
2025-10-09 22:09:04 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:26 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 22.305542s.
2025-10-09 22:09:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d806079e6692f254c53f0b64928e3556811424ec/pre_clip".
2025-10-09 22:09:28 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:09:29 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.829841s.
2025-10-09 22:09:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d806079e6692f254c53f0b64928e3556811424ec/SharpenEPI".
2025-10-09 22:09:30 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:39 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.457564s.
2025-10-09 22:09:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/d806079e6692f254c53f0b64928e3556811424ec/hmc_b0".
2025-10-09 22:09:40 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:10:09 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 28.938309s.
2025-10-09 22:10:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/73c7f287adea4b73c842638db2dbccf45e29a115/pre_clip".
2025-10-09 22:10:10 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:10:11 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.790397s.
2025-10-09 22:10:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/73c7f287adea4b73c842638db2dbccf45e29a115/SharpenEPI".
2025-10-09 22:10:12 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:21 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.675591s.
2025-10-09 22:10:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/73c7f287adea4b73c842638db2dbccf45e29a115/hmc_b0".
2025-10-09 22:10:22 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:10:52 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 29.336774s.
2025-10-09 22:10:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2c1bde03b9b061bb5098a20d059317287621c008/pre_clip".
2025-10-09 22:10:52 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:10:53 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.767603s.
2025-10-09 22:10:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2c1bde03b9b061bb5098a20d059317287621c008/SharpenEPI".
2025-10-09 22:10:54 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:02 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.402365s.
2025-10-09 22:11:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/2c1bde03b9b061bb5098a20d059317287621c008/hmc_b0".
2025-10-09 22:11:04 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:11:28 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 23.769132s.
2025-10-09 22:11:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/pre_clip".
2025-10-09 22:11:28 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:11:29 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.82155s.
2025-10-09 22:11:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3a10b5748432141e866736ffdd7a45d9eec154f7/SharpenEPI".
2025-10-09 22:11:30 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:39 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.593472s.
2025-10-09 22:11:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/3a10b5748432141e866736ffdd7a45d9eec154f7/hmc_b0".
2025-10-09 22:11:40 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:12:04 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 23.3504s.
2025-10-09 22:12:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/pre_clip".
2025-10-09 22:12:04 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:12:05 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.765895s.
2025-10-09 22:12:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5a79b63b2d4cc676b29cac2f192f8914690897ff/SharpenEPI".
2025-10-09 22:12:06 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:14 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.286498s.
2025-10-09 22:12:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/5a79b63b2d4cc676b29cac2f192f8914690897ff/hmc_b0".
2025-10-09 22:12:16 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:12:44 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 28.375315s.
2025-10-09 22:12:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/pre_clip".
2025-10-09 22:12:46 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:12:47 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.7879s.
2025-10-09 22:12:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/SharpenEPI".
2025-10-09 22:12:48 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:56 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.305123s.
2025-10-09 22:12:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/hmc_b0".
2025-10-09 22:12:58 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:13:26 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 27.892339s.
2025-10-09 22:13:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/post_n4".
2025-10-09 22:13:28 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:14:01 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 32.829475s.
2025-10-09 22:14:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/91715e6cc6c3247e011dace044bdd89d9d948dff/smoothness".
2025-10-09 22:14:02 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:14:09 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 6.463615s.
2025-10-09 22:14:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/PlotMosaicZoomed".
2025-10-09 22:14:10 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:14:16 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 5.593836s.
2025-10-09 22:14:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/PlotBrainmask".
2025-10-09 22:14:16 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:14:20 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 4.102973s.
2025-10-09 22:14:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/post_n4".
2025-10-09 22:14:22 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:14:54 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 31.946401s.
2025-10-09 22:14:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/smoothness".
2025-10-09 22:14:56 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:15:03 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 6.506655s.
2025-10-09 22:15:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/PlotMosaicZoomed".
2025-10-09 22:15:04 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:15:10 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 5.660329s.
2025-10-09 22:15:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/PlotBrainmask".
2025-10-09 22:15:10 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:15:14 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 4.096923s.
2025-10-09 22:15:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/pre_n4".
2025-10-09 22:15:16 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:24 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.968146s.
2025-10-09 22:15:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/pre_n4".
2025-10-09 22:15:26 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:34 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.836682s.
2025-10-09 22:15:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d806079e6692f254c53f0b64928e3556811424ec/pre_n4".
2025-10-09 22:15:34 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:42 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.805956s.
2025-10-09 22:15:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/73c7f287adea4b73c842638db2dbccf45e29a115/pre_n4".
2025-10-09 22:15:42 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:50 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.833892s.
2025-10-09 22:15:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2c1bde03b9b061bb5098a20d059317287621c008/pre_n4".
2025-10-09 22:15:50 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:58 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.890481s.
2025-10-09 22:16:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/pre_n4".
2025-10-09 22:16:00 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:16:08 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.941822s.
2025-10-09 22:16:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/pre_n4".
2025-10-09 22:16:10 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:16:18 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.936234s.
2025-10-09 22:16:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/pre_n4".
2025-10-09 22:16:20 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:16:28 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.919491s.
2025-10-09 22:16:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/final_masked".
2025-10-09 22:16:30 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:16:31 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.373501s.
2025-10-09 22:16:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/SpatialNormalization".
2025-10-09 22:16:32 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:16:33 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:17:53 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/SpatialNormalization/stderr.nipype-init).
2025-10-09 22:17:53 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:17:53 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:18:11 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:18:13 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:18:13 | INFO | niworkflows | Generating visual report
2025-10-09 22:18:32 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 119.730936s.
2025-10-09 22:18:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/ds_report_zoomed".
2025-10-09 22:18:32 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:18:32 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.005574s.
2025-10-09 22:18:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/ds_report_bmask".
2025-10-09 22:18:32 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:18:32 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.005271s.
2025-10-09 22:18:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/final_masked".
2025-10-09 22:18:33 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:18:33 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.3555s.
2025-10-09 22:18:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/SpatialNormalization".
2025-10-09 22:18:34 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:18:35 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:19:53 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:19:53 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:20:11 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:20:13 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:20:13 | INFO | niworkflows | Generating visual report
2025-10-09 22:20:33 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 118.524879s.
2025-10-09 22:20:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/ds_report_zoomed".
2025-10-09 22:20:34 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:20:34 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.005461s.
2025-10-09 22:20:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/ds_report_bmask".
2025-10-09 22:20:35 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:20:35 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.005295s.
2025-10-09 22:20:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/synthstrip".
2025-10-09 22:20:35 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:21:27 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 52.497506s.
2025-10-09 22:21:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/synthstrip".
2025-10-09 22:21:28 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:22:21 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 52.33623s.
2025-10-09 22:22:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d806079e6692f254c53f0b64928e3556811424ec/synthstrip".
2025-10-09 22:22:23 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:23:14 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 51.832556s.
2025-10-09 22:23:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/73c7f287adea4b73c842638db2dbccf45e29a115/synthstrip".
2025-10-09 22:23:15 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:24:06 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 51.748331s.
2025-10-09 22:24:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2c1bde03b9b061bb5098a20d059317287621c008/synthstrip".
2025-10-09 22:24:07 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:24:58 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 51.877816s.
2025-10-09 22:24:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/synthstrip".
2025-10-09 22:24:59 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:25:49 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 50.903847999999996s.
2025-10-09 22:25:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/synthstrip".
2025-10-09 22:25:51 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:26:40 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 49.798076s.
2025-10-09 22:26:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/synthstrip".
2025-10-09 22:26:41 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:27:31 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 50.128138s.
2025-10-09 22:27:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/ds_report_norm".
2025-10-09 22:27:33 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:27:33 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005184s.
2025-10-09 22:27:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/25d1fdea6764ba11523ef171af7f1b4da5af0fc9/ds_report_norm".
2025-10-09 22:27:33 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:27:33 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005121s.
2025-10-09 22:27:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/post_n4".
2025-10-09 22:27:33 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:27:36 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.897772s.
2025-10-09 22:27:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/2ee22958ce5b6c434b57df23136f2dd06aabc11e/sp_mask".
2025-10-09 22:27:37 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:27:37 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.706034s.
2025-10-09 22:27:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/2ee22958ce5b6c434b57df23136f2dd06aabc11e/drift".
2025-10-09 22:27:39 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:27:39 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9967, 0.9975, 0.9986, 0.997, 0.9853, 1.0016.
2025-10-09 22:27:40 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.732218s.
2025-10-09 22:27:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2ee22958ce5b6c434b57df23136f2dd06aabc11e/EPI2MNI".
2025-10-09 22:27:41 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:27:41 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:28:10 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2ee22958ce5b6c434b57df23136f2dd06aabc11e/EPI2MNI/stderr.nipype-init).
2025-10-09 22:28:10 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:28:10 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2ee22958ce5b6c434b57df23136f2dd06aabc11e/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2ee22958ce5b6c434b57df23136f2dd06aabc11e/SharpenEPI/sub-cIVs043_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-110_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2ee22958ce5b6c434b57df23136f2dd06aabc11e/SharpenEPI/sub-cIVs043_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-110_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2ee22958ce5b6c434b57df23136f2dd06aabc11e/SharpenEPI/sub-cIVs043_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-110_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:29:25 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:29:25 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2ee22958ce5b6c434b57df23136f2dd06aabc11e/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:29:25 | INFO | niworkflows | Generating visual report
2025-10-09 22:29:44 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 123.290406s.
2025-10-09 22:29:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/post_n4".
2025-10-09 22:29:45 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:29:48 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.883674s.
2025-10-09 22:29:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/sp_mask".
2025-10-09 22:29:49 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:29:49 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.647829s.
2025-10-09 22:29:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/drift".
2025-10-09 22:29:51 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:29:51 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9909, 0.9425, 0.991, 0.9947, 0.9856, 0.9958.
2025-10-09 22:29:52 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.6974930000000001s.
2025-10-09 22:29:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/EPI2MNI".
2025-10-09 22:29:53 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:29:53 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:30:21 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:30:21 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/SharpenEPI/sub-cIVs043_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-213_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/SharpenEPI/sub-cIVs043_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-213_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/SharpenEPI/sub-cIVs043_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-213_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:31:39 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:31:39 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:31:39 | INFO | niworkflows | Generating visual report
2025-10-09 22:31:58 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 125.253734s.
2025-10-09 22:31:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d806079e6692f254c53f0b64928e3556811424ec/post_n4".
2025-10-09 22:31:59 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:32:02 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.886829s.
2025-10-09 22:32:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/d806079e6692f254c53f0b64928e3556811424ec/sp_mask".
2025-10-09 22:32:03 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:32:04 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 1.078482s.
2025-10-09 22:32:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/d806079e6692f254c53f0b64928e3556811424ec/drift".
2025-10-09 22:32:05 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:32:05 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9846, 0.9863, 0.9919, 0.9883, 0.9762, 0.9742, 0.973, 0.9809.
2025-10-09 22:32:07 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.240869s.
2025-10-09 22:32:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d806079e6692f254c53f0b64928e3556811424ec/EPI2MNI".
2025-10-09 22:32:09 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:32:09 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:32:40 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:32:40 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d806079e6692f254c53f0b64928e3556811424ec/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d806079e6692f254c53f0b64928e3556811424ec/SharpenEPI/sub-cIVs043_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-108_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d806079e6692f254c53f0b64928e3556811424ec/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d806079e6692f254c53f0b64928e3556811424ec/SharpenEPI/sub-cIVs043_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-108_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d806079e6692f254c53f0b64928e3556811424ec/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d806079e6692f254c53f0b64928e3556811424ec/SharpenEPI/sub-cIVs043_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-108_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d806079e6692f254c53f0b64928e3556811424ec/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:33:59 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:33:59 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d806079e6692f254c53f0b64928e3556811424ec/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:33:59 | INFO | niworkflows | Generating visual report
2025-10-09 22:34:18 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 128.744347s.
2025-10-09 22:34:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/73c7f287adea4b73c842638db2dbccf45e29a115/post_n4".
2025-10-09 22:34:19 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:34:22 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.894684s.
2025-10-09 22:34:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/73c7f287adea4b73c842638db2dbccf45e29a115/sp_mask".
2025-10-09 22:34:23 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:34:24 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 1.150379s.
2025-10-09 22:34:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/73c7f287adea4b73c842638db2dbccf45e29a115/drift".
2025-10-09 22:34:25 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:34:25 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.991, 0.9856, 0.993, 0.9876, 0.979, 0.9683, 0.9674, 0.9933.
2025-10-09 22:34:27 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.298541s.
2025-10-09 22:34:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/73c7f287adea4b73c842638db2dbccf45e29a115/EPI2MNI".
2025-10-09 22:34:29 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:34:29 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:35:00 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/73c7f287adea4b73c842638db2dbccf45e29a115/EPI2MNI/stderr.nipype-init).
2025-10-09 22:35:00 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:35:00 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/73c7f287adea4b73c842638db2dbccf45e29a115/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/73c7f287adea4b73c842638db2dbccf45e29a115/SharpenEPI/sub-cIVs043_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-211_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/73c7f287adea4b73c842638db2dbccf45e29a115/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/73c7f287adea4b73c842638db2dbccf45e29a115/SharpenEPI/sub-cIVs043_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-211_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/73c7f287adea4b73c842638db2dbccf45e29a115/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/73c7f287adea4b73c842638db2dbccf45e29a115/SharpenEPI/sub-cIVs043_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-211_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/73c7f287adea4b73c842638db2dbccf45e29a115/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:36:16 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:36:16 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/73c7f287adea4b73c842638db2dbccf45e29a115/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:36:16 | INFO | niworkflows | Generating visual report
2025-10-09 22:36:35 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 126.56322s.
2025-10-09 22:36:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2c1bde03b9b061bb5098a20d059317287621c008/post_n4".
2025-10-09 22:36:37 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:36:40 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.9126440000000002s.
2025-10-09 22:36:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/2c1bde03b9b061bb5098a20d059317287621c008/sp_mask".
2025-10-09 22:36:41 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:36:42 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.706657s.
2025-10-09 22:36:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/2c1bde03b9b061bb5098a20d059317287621c008/drift".
2025-10-09 22:36:43 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:36:43 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9948, 0.9912, 0.9997, 0.9934, 0.9919, 0.9878.
2025-10-09 22:36:45 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.728367s.
2025-10-09 22:36:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2c1bde03b9b061bb5098a20d059317287621c008/EPI2MNI".
2025-10-09 22:36:45 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:36:45 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:37:16 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2c1bde03b9b061bb5098a20d059317287621c008/EPI2MNI/stderr.nipype-init).
2025-10-09 22:37:16 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:37:16 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2c1bde03b9b061bb5098a20d059317287621c008/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2c1bde03b9b061bb5098a20d059317287621c008/SharpenEPI/sub-cIVs043_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-108_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2c1bde03b9b061bb5098a20d059317287621c008/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2c1bde03b9b061bb5098a20d059317287621c008/SharpenEPI/sub-cIVs043_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-108_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2c1bde03b9b061bb5098a20d059317287621c008/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2c1bde03b9b061bb5098a20d059317287621c008/SharpenEPI/sub-cIVs043_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-108_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2c1bde03b9b061bb5098a20d059317287621c008/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:38:30 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:38:30 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2c1bde03b9b061bb5098a20d059317287621c008/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:38:30 | INFO | niworkflows | Generating visual report
2025-10-09 22:38:49 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 124.234853s.
2025-10-09 22:38:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/post_n4".
2025-10-09 22:38:51 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:38:54 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.907874s.
2025-10-09 22:38:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/3a10b5748432141e866736ffdd7a45d9eec154f7/sp_mask".
2025-10-09 22:38:55 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:38:56 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.726141s.
2025-10-09 22:38:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/3a10b5748432141e866736ffdd7a45d9eec154f7/drift".
2025-10-09 22:38:57 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:38:57 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.996, 0.9918, 1.0006, 0.9985, 0.9943, 0.9918.
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.7826629999999999s.
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3a10b5748432141e866736ffdd7a45d9eec154f7/EPI2MNI".
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:38:59 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:39:29 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:39:29 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3a10b5748432141e866736ffdd7a45d9eec154f7/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3a10b5748432141e866736ffdd7a45d9eec154f7/SharpenEPI/sub-cIVs043_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-211_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3a10b5748432141e866736ffdd7a45d9eec154f7/SharpenEPI/sub-cIVs043_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-211_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3a10b5748432141e866736ffdd7a45d9eec154f7/SharpenEPI/sub-cIVs043_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-211_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:40:50 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:40:50 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3a10b5748432141e866736ffdd7a45d9eec154f7/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:40:50 | INFO | niworkflows | Generating visual report
2025-10-09 22:41:09 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 130.180311s.
2025-10-09 22:41:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/post_n4".
2025-10-09 22:41:11 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:41:14 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.8529970000000002s.
2025-10-09 22:41:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/5a79b63b2d4cc676b29cac2f192f8914690897ff/sp_mask".
2025-10-09 22:41:15 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:41:16 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 1.052534s.
2025-10-09 22:41:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/5a79b63b2d4cc676b29cac2f192f8914690897ff/drift".
2025-10-09 22:41:17 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:41:17 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9979, 0.9949, 0.9909, 0.9899, 0.9809, 0.9823, 0.9769, 0.9885.
2025-10-09 22:41:19 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.229085s.
2025-10-09 22:41:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5a79b63b2d4cc676b29cac2f192f8914690897ff/EPI2MNI".
2025-10-09 22:41:21 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:41:21 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:41:51 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:41:51 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5a79b63b2d4cc676b29cac2f192f8914690897ff/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5a79b63b2d4cc676b29cac2f192f8914690897ff/SharpenEPI/sub-cIVs043_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-106_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5a79b63b2d4cc676b29cac2f192f8914690897ff/SharpenEPI/sub-cIVs043_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-106_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5a79b63b2d4cc676b29cac2f192f8914690897ff/SharpenEPI/sub-cIVs043_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-106_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:43:08 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:43:08 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5a79b63b2d4cc676b29cac2f192f8914690897ff/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:43:08 | INFO | niworkflows | Generating visual report
2025-10-09 22:43:27 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 125.883032s.
2025-10-09 22:43:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/post_n4".
2025-10-09 22:43:27 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:43:30 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.92012s.
2025-10-09 22:43:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/sp_mask".
2025-10-09 22:43:31 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:43:32 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 1.0683880000000001s.
2025-10-09 22:43:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/drift".
2025-10-09 22:43:33 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:43:33 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.994, 0.9962, 1.0017, 0.9943, 0.9955, 0.9944, 0.9934, 0.9928.
2025-10-09 22:43:35 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.188952s.
2025-10-09 22:43:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/EPI2MNI".
2025-10-09 22:43:37 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:43:37 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:44:10 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/EPI2MNI/stderr.nipype-init).
2025-10-09 22:44:10 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:44:10 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/SharpenEPI/sub-cIVs043_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-209_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/SharpenEPI/sub-cIVs043_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-209_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/SharpenEPI/sub-cIVs043_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-209_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:45:34 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:45:34 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:45:34 | INFO | niworkflows | Generating visual report
2025-10-09 22:45:53 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 135.871322s.
2025-10-09 22:45:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/final_masked".
2025-10-09 22:45:53 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:45:53 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.042609s.
2025-10-09 22:45:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/2ee22958ce5b6c434b57df23136f2dd06aabc11e/dwidenoise".
2025-10-09 22:45:55 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:46:22 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 26.651141s.
2025-10-09 22:46:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2ee22958ce5b6c434b57df23136f2dd06aabc11e/ResampleSegmentation".
2025-10-09 22:46:23 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:46:28 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.764928s.
2025-10-09 22:46:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/final_masked".
2025-10-09 22:46:29 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:46:29 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.040614s.
2025-10-09 22:46:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/dwidenoise".
2025-10-09 22:46:31 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:46:58 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 26.354451s.
2025-10-09 22:46:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/ResampleSegmentation".
2025-10-09 22:46:59 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:47:04 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.427439s.
2025-10-09 22:47:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d806079e6692f254c53f0b64928e3556811424ec/final_masked".
2025-10-09 22:47:05 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:47:05 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.055347s.
2025-10-09 22:47:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/d806079e6692f254c53f0b64928e3556811424ec/dwidenoise".
2025-10-09 22:47:07 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:47:54 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 46.715607s.
2025-10-09 22:47:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d806079e6692f254c53f0b64928e3556811424ec/ResampleSegmentation".
2025-10-09 22:47:55 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:48:00 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.329372s.
2025-10-09 22:48:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/73c7f287adea4b73c842638db2dbccf45e29a115/final_masked".
2025-10-09 22:48:01 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:48:01 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.038951s.
2025-10-09 22:48:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/73c7f287adea4b73c842638db2dbccf45e29a115/dwidenoise".
2025-10-09 22:48:03 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:48:49 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 45.796336s.
2025-10-09 22:48:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/73c7f287adea4b73c842638db2dbccf45e29a115/ResampleSegmentation".
2025-10-09 22:48:49 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:48:54 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.476258s.
2025-10-09 22:48:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2c1bde03b9b061bb5098a20d059317287621c008/final_masked".
2025-10-09 22:48:55 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:48:55 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.038532s.
2025-10-09 22:48:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/2c1bde03b9b061bb5098a20d059317287621c008/dwidenoise".
2025-10-09 22:48:57 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:49:22 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 24.695402s.
2025-10-09 22:49:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2c1bde03b9b061bb5098a20d059317287621c008/ResampleSegmentation".
2025-10-09 22:49:23 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:49:28 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.306669s.
2025-10-09 22:49:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/final_masked".
2025-10-09 22:49:29 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:49:29 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.038397s.
2025-10-09 22:49:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/3a10b5748432141e866736ffdd7a45d9eec154f7/dwidenoise".
2025-10-09 22:49:31 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:49:56 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 24.553934s.
2025-10-09 22:49:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3a10b5748432141e866736ffdd7a45d9eec154f7/ResampleSegmentation".
2025-10-09 22:49:57 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:50:01 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.089262s.
2025-10-09 22:50:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/final_masked".
2025-10-09 22:50:03 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:50:03 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.039188s.
2025-10-09 22:50:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/5a79b63b2d4cc676b29cac2f192f8914690897ff/dwidenoise".
2025-10-09 22:50:05 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:50:49 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 43.534622s.
2025-10-09 22:50:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/5a79b63b2d4cc676b29cac2f192f8914690897ff/ResampleSegmentation".
2025-10-09 22:50:49 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:50:53 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.087381s.
2025-10-09 22:50:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/final_masked".
2025-10-09 22:50:55 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:50:55 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.03729s.
2025-10-09 22:50:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/dwidenoise".
2025-10-09 22:50:57 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:51:41 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 43.215358s.
2025-10-09 22:51:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/ResampleSegmentation".
2025-10-09 22:51:41 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:51:45 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.940636s.
2025-10-09 22:51:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/2ee22958ce5b6c434b57df23136f2dd06aabc11e/dwimodel".
2025-10-09 22:51:47 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:51:52 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.372123s.
2025-10-09 22:51:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/2ee22958ce5b6c434b57df23136f2dd06aabc11e/estimate_sigma".
2025-10-09 22:51:53 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:51:53 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038292s.
2025-10-09 22:51:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/get_wm".
2025-10-09 22:51:55 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:51:55 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.03511s.
2025-10-09 22:51:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/dwimodel".
2025-10-09 22:51:57 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:52:02 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.311221s.
2025-10-09 22:52:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/estimate_sigma".
2025-10-09 22:52:03 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:03 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.062526s.
2025-10-09 22:52:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/get_wm".
2025-10-09 22:52:05 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:05 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034947s.
2025-10-09 22:52:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/d806079e6692f254c53f0b64928e3556811424ec/dwimodel".
2025-10-09 22:52:07 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:52:12 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.805016s.
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/d806079e6692f254c53f0b64928e3556811424ec/estimate_sigma".
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038445s.
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d806079e6692f254c53f0b64928e3556811424ec/get_wm".
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035186s.
2025-10-09 22:52:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/73c7f287adea4b73c842638db2dbccf45e29a115/dwimodel".
2025-10-09 22:52:17 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:52:22 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.787383s.
2025-10-09 22:52:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/73c7f287adea4b73c842638db2dbccf45e29a115/estimate_sigma".
2025-10-09 22:52:23 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:23 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038746s.
2025-10-09 22:52:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/73c7f287adea4b73c842638db2dbccf45e29a115/get_wm".
2025-10-09 22:52:25 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:25 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035073s.
2025-10-09 22:52:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/2c1bde03b9b061bb5098a20d059317287621c008/dwimodel".
2025-10-09 22:52:27 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:52:32 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.290121s.
2025-10-09 22:52:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/2c1bde03b9b061bb5098a20d059317287621c008/estimate_sigma".
2025-10-09 22:52:33 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:33 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038168s.
2025-10-09 22:52:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2c1bde03b9b061bb5098a20d059317287621c008/get_wm".
2025-10-09 22:52:35 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:35 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034869s.
2025-10-09 22:52:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/3a10b5748432141e866736ffdd7a45d9eec154f7/dwimodel".
2025-10-09 22:52:37 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:52:42 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.300525s.
2025-10-09 22:52:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/3a10b5748432141e866736ffdd7a45d9eec154f7/estimate_sigma".
2025-10-09 22:52:43 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:43 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038339s.
2025-10-09 22:52:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/get_wm".
2025-10-09 22:52:45 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:45 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034809s.
2025-10-09 22:52:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/5a79b63b2d4cc676b29cac2f192f8914690897ff/dwimodel".
2025-10-09 22:52:47 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:52:52 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.787568s.
2025-10-09 22:52:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/5a79b63b2d4cc676b29cac2f192f8914690897ff/estimate_sigma".
2025-10-09 22:52:53 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:53 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038432s.
2025-10-09 22:52:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/get_wm".
2025-10-09 22:52:55 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:55 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.03598s.
2025-10-09 22:52:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/dwimodel".
2025-10-09 22:52:57 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:53:02 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.766377s.
2025-10-09 22:53:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/estimate_sigma".
2025-10-09 22:53:03 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:53:03 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.039039s.
2025-10-09 22:53:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/get_wm".
2025-10-09 22:53:05 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:53:05 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034737s.
2025-10-09 22:53:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/2ee22958ce5b6c434b57df23136f2dd06aabc11e/cc_mask".
2025-10-09 22:53:07 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:53:08 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.551473s.
2025-10-09 22:53:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/mosaic_fa".
2025-10-09 22:53:09 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:53:11 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.355815s.
2025-10-09 22:53:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/mosaic_md".
2025-10-09 22:53:11 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:53:13 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.465522s.
2025-10-09 22:53:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/plot_heatmap".
2025-10-09 22:53:13 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:53:15 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.514579s.
2025-10-09 22:53:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/cc_mask".
2025-10-09 22:53:15 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:53:16 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.535035s.
2025-10-09 22:53:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/mosaic_fa".
2025-10-09 22:53:17 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:53:19 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.362336s.
2025-10-09 22:53:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/mosaic_md".
2025-10-09 22:53:19 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:53:21 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.64286s.
2025-10-09 22:53:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/plot_heatmap".
2025-10-09 22:53:21 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:53:23 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.177545s.
2025-10-09 22:53:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/d806079e6692f254c53f0b64928e3556811424ec/cc_mask".
2025-10-09 22:53:23 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:53:24 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.508431s.
2025-10-09 22:53:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d806079e6692f254c53f0b64928e3556811424ec/mosaic_fa".
2025-10-09 22:53:25 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:53:27 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.494457s.
2025-10-09 22:53:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d806079e6692f254c53f0b64928e3556811424ec/mosaic_md".
2025-10-09 22:53:27 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:53:29 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.641629s.
2025-10-09 22:53:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d806079e6692f254c53f0b64928e3556811424ec/plot_heatmap".
2025-10-09 22:53:29 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:53:31 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.237569s.
2025-10-09 22:53:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/73c7f287adea4b73c842638db2dbccf45e29a115/cc_mask".
2025-10-09 22:53:31 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:53:32 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.538414s.
2025-10-09 22:53:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/73c7f287adea4b73c842638db2dbccf45e29a115/mosaic_fa".
2025-10-09 22:53:33 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:53:35 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.49949s.
2025-10-09 22:53:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/73c7f287adea4b73c842638db2dbccf45e29a115/mosaic_md".
2025-10-09 22:53:35 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:53:37 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.716669s.
2025-10-09 22:53:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/73c7f287adea4b73c842638db2dbccf45e29a115/plot_heatmap".
2025-10-09 22:53:37 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:53:39 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.244809s.
2025-10-09 22:53:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/2c1bde03b9b061bb5098a20d059317287621c008/cc_mask".
2025-10-09 22:53:39 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:53:40 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.534689s.
2025-10-09 22:53:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2c1bde03b9b061bb5098a20d059317287621c008/mosaic_fa".
2025-10-09 22:53:41 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:53:43 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.487647s.
2025-10-09 22:53:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2c1bde03b9b061bb5098a20d059317287621c008/mosaic_md".
2025-10-09 22:53:43 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:53:45 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.470031s.
2025-10-09 22:53:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2c1bde03b9b061bb5098a20d059317287621c008/plot_heatmap".
2025-10-09 22:53:45 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:53:47 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.18347s.
2025-10-09 22:53:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/3a10b5748432141e866736ffdd7a45d9eec154f7/cc_mask".
2025-10-09 22:53:47 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:53:48 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.508221s.
2025-10-09 22:53:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/mosaic_fa".
2025-10-09 22:53:49 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:53:51 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.66742s.
2025-10-09 22:53:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/mosaic_md".
2025-10-09 22:53:51 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:53:53 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.470526s.
2025-10-09 22:53:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/plot_heatmap".
2025-10-09 22:53:53 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:53:55 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.438314s.
2025-10-09 22:53:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/5a79b63b2d4cc676b29cac2f192f8914690897ff/cc_mask".
2025-10-09 22:53:55 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:53:56 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.511033s.
2025-10-09 22:53:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/mosaic_fa".
2025-10-09 22:53:57 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:53:59 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.362557s.
2025-10-09 22:53:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/mosaic_md".
2025-10-09 22:53:59 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:54:01 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.4623439999999999s.
2025-10-09 22:54:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/plot_heatmap".
2025-10-09 22:54:01 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:54:03 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.503706s.
2025-10-09 22:54:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/cc_mask".
2025-10-09 22:54:03 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:54:04 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.51485s.
2025-10-09 22:54:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/mosaic_fa".
2025-10-09 22:54:05 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:54:07 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.374052s.
2025-10-09 22:54:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/mosaic_md".
2025-10-09 22:54:07 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:54:09 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.6572179999999999s.
2025-10-09 22:54:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/plot_heatmap".
2025-10-09 22:54:09 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:54:11 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.2376800000000001s.
2025-10-09 22:54:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/ds_report_fa".
2025-10-09 22:54:11 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:11 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004903s.
2025-10-09 22:54:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/ds_report_md".
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004788s.
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2ee22958ce5b6c434b57df23136f2dd06aabc11e/ds_report_hm".
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004767s.
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/ds_report_fa".
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004773s.
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/ds_report_md".
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004875s.
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ed5994efe1f0301ee17c35b39437ddd3d0e21dfc/ds_report_hm".
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004824s.
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d806079e6692f254c53f0b64928e3556811424ec/ds_report_fa".
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004725s.
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d806079e6692f254c53f0b64928e3556811424ec/ds_report_md".
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.00472s.
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d806079e6692f254c53f0b64928e3556811424ec/ds_report_hm".
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:12 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004779s.
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/73c7f287adea4b73c842638db2dbccf45e29a115/ds_report_fa".
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004744s.
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/73c7f287adea4b73c842638db2dbccf45e29a115/ds_report_md".
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004838s.
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/73c7f287adea4b73c842638db2dbccf45e29a115/ds_report_hm".
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004751s.
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2c1bde03b9b061bb5098a20d059317287621c008/ds_report_fa".
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004624s.
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2c1bde03b9b061bb5098a20d059317287621c008/ds_report_md".
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004616s.
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2c1bde03b9b061bb5098a20d059317287621c008/ds_report_hm".
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004695s.
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/ds_report_fa".
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004662s.
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/ds_report_md".
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:13 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004601s.
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3a10b5748432141e866736ffdd7a45d9eec154f7/ds_report_hm".
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004751s.
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/ds_report_fa".
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004854s.
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/ds_report_md".
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004732s.
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/5a79b63b2d4cc676b29cac2f192f8914690897ff/ds_report_hm".
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004671s.
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/ds_report_fa".
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.00874s.
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/ds_report_md".
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004661s.
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7d8ce9f4eafd1d4eb6fa5c6eb5b8021d7d68f566/ds_report_hm".
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004777s.
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:54:24 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 9.705231s.
2025-10-09 22:54:25 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:54:25 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:54:34 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 9.71861s.
2025-10-09 22:54:35 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:54:35 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:54:44 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 9.696941s.
2025-10-09 22:54:45 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:54:45 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:54:45 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:54:45 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:54:45 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:54:45 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:54:45 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/91715e6cc6c3247e011dace044bdd89d9d948dff/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:54:45 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:54:45 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:54:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/91715e6cc6c3247e011dace044bdd89d9d948dff/Enhance".
2025-10-09 22:54:47 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:54:47 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.626603s.
2025-10-09 22:54:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/91715e6cc6c3247e011dace044bdd89d9d948dff/format_tpm_names".
2025-10-09 22:54:49 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:54:51 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 2.069239s.
2025-10-09 22:54:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/91715e6cc6c3247e011dace044bdd89d9d948dff/Grad".
2025-10-09 22:54:53 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:54:59 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 6.69234s.
2025-10-09 22:55:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/91715e6cc6c3247e011dace044bdd89d9d948dff/apply_mask".
2025-10-09 22:55:01 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:55:01 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.324812s.
2025-10-09 22:55:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/91715e6cc6c3247e011dace044bdd89d9d948dff/GradientThreshold".
2025-10-09 22:55:03 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:55:16 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 13.814425s.
2025-10-09 22:55:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/91715e6cc6c3247e011dace044bdd89d9d948dff/segmentation".
2025-10-09 22:55:17 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:57:03 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 106.158594s.
2025-10-09 22:57:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/91715e6cc6c3247e011dace044bdd89d9d948dff/ArtifactMask".
2025-10-09 22:57:05 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:57:11 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 5.988791s.
2025-10-09 22:57:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/PlotHeadmask".
2025-10-09 22:57:13 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:57:16 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 3.079272s.
2025-10-09 22:57:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/91715e6cc6c3247e011dace044bdd89d9d948dff/harmonize".
2025-10-09 22:57:17 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:57:18 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 1.084714s.
2025-10-09 22:57:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/91715e6cc6c3247e011dace044bdd89d9d948dff/PlotSegmentation".
2025-10-09 22:57:19 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:57:22 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 3.514281s.
2025-10-09 22:57:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/91715e6cc6c3247e011dace044bdd89d9d948dff/provenance".
2025-10-09 22:57:23 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:57:23 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.063542s.
2025-10-09 22:57:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/91715e6cc6c3247e011dace044bdd89d9d948dff/ComputeQI2".
2025-10-09 22:57:23 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:57:23 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.289011s.
2025-10-09 22:57:23 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:57:23 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/91715e6cc6c3247e011dace044bdd89d9d948dff/ComputeQI2)
2025-10-09 22:57:23 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=239) crashed: /var/lib/condor/execute/dir_470419/ds/logs/crash-20251009-225723-fhoffstaedter-ComputeQI2.a0-9772e242-2478-42bc-951f-04f95f6d7361.txt
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx1/anat/sub-cIVs043_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx1/dwi/sub-cIVs043_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-109_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx1/dwi/sub-cIVs043_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-212_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx1/dwi/sub-cIVs043_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-110_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx1/dwi/sub-cIVs043_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-213_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx1/dwi/sub-cIVs043_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-108_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx1/dwi/sub-cIVs043_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-211_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx2/anat/sub-cIVs043_ses-s1Bx2_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx2/dwi/sub-cIVs043_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-107_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx2/dwi/sub-cIVs043_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-210_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx2/dwi/sub-cIVs043_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-108_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx2/dwi/sub-cIVs043_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-211_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx2/dwi/sub-cIVs043_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-106_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043/ses-s1Bx2/dwi/sub-cIVs043_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-209_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs043 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_470419/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 16)
run (error: 1)
View git blame Copy permalink