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ds003416-mriqc/logs/sub-cIVs038_10066491.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

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install(ok): /var/lib/condor/execute/dir_3951234/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3951234/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3951234/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_3951234/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:55:51 | IMPORTANT | mriqc | Extracting metadata and entities for 2 input runs of modality 't1w'...
2025-10-09 21:55:51 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:55:51 | IMPORTANT | mriqc | Extracting metadata and entities for 12 input runs of modality 'dwi'...
2025-10-09 21:55:52 | WARNING | nipype.workflow | 4 cannot be processed (too short or too long)
2025-10-09 21:55:52 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:55:52 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215550_90c3f684-d552-4e43-8bef-ff532c705b1c.toml.
2025-10-09 21:55:56 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:55:57 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:55:58 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 8 NIfTI files..
2025-10-09 21:55:58 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 2 NIfTI files..
2025-10-09 21:56:03 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:56:07 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:56:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/conform".
2025-10-09 21:56:07 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:56:08 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.66541s.
2025-10-09 21:56:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/conform".
2025-10-09 21:56:09 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:56:10 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.605482s.
2025-10-09 21:56:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/b4fea93019e5725188be939cf5d394e000e2c821/provenance".
2025-10-09 21:56:11 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:56:11 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.021776s.
2025-10-09 21:56:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/b4fea93019e5725188be939cf5d394e000e2c821/load_bmat".
2025-10-09 21:56:11 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:56:12 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.17386s.
2025-10-09 21:56:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/b4fea93019e5725188be939cf5d394e000e2c821/sanitize".
2025-10-09 21:56:13 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:14 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.767568s.
2025-10-09 21:56:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/provenance".
2025-10-09 21:56:15 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:56:15 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.021464s.
2025-10-09 21:56:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/load_bmat".
2025-10-09 21:56:15 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:56:15 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023258s.
2025-10-09 21:56:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/sanitize".
2025-10-09 21:56:17 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:18 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.77205s.
2025-10-09 21:56:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/provenance".
2025-10-09 21:56:19 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:56:19 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.027462s.
2025-10-09 21:56:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/load_bmat".
2025-10-09 21:56:19 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:56:19 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024716s.
2025-10-09 21:56:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/sanitize".
2025-10-09 21:56:21 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:22 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.027729s.
2025-10-09 21:56:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/9088a858dc43fcd3ced162096a91cf09e19184a7/provenance".
2025-10-09 21:56:23 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:56:23 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.027454s.
2025-10-09 21:56:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/9088a858dc43fcd3ced162096a91cf09e19184a7/load_bmat".
2025-10-09 21:56:23 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:56:23 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023587s.
2025-10-09 21:56:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/9088a858dc43fcd3ced162096a91cf09e19184a7/sanitize".
2025-10-09 21:56:25 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:26 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.045309s.
2025-10-09 21:56:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/f8b748529244e64474f1bb524d5c920cb33c448f/provenance".
2025-10-09 21:56:27 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:56:27 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.018088s.
2025-10-09 21:56:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/f8b748529244e64474f1bb524d5c920cb33c448f/load_bmat".
2025-10-09 21:56:27 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:56:27 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024481s.
2025-10-09 21:56:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/f8b748529244e64474f1bb524d5c920cb33c448f/sanitize".
2025-10-09 21:56:29 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:30 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.735158s.
2025-10-09 21:56:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/provenance".
2025-10-09 21:56:31 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:56:31 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.018301s.
2025-10-09 21:56:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/load_bmat".
2025-10-09 21:56:31 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:56:31 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024369s.
2025-10-09 21:56:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/sanitize".
2025-10-09 21:56:33 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:34 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.756766s.
2025-10-09 21:56:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/provenance".
2025-10-09 21:56:35 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:56:35 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.023126s.
2025-10-09 21:56:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/load_bmat".
2025-10-09 21:56:35 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:56:35 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023409s.
2025-10-09 21:56:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/sanitize".
2025-10-09 21:56:37 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:38 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.999217s.
2025-10-09 21:56:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/75046b00f18f651b68aaca60a1c4982df40d7fae/provenance".
2025-10-09 21:56:39 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:56:39 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.023211s.
2025-10-09 21:56:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/75046b00f18f651b68aaca60a1c4982df40d7fae/load_bmat".
2025-10-09 21:56:39 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:56:39 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024818s.
2025-10-09 21:56:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/75046b00f18f651b68aaca60a1c4982df40d7fae/sanitize".
2025-10-09 21:56:41 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:42 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.956817s.
2025-10-09 21:56:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/pre_clip".
2025-10-09 21:56:43 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:56:53 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 10.031755s.
2025-10-09 21:56:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/RotationMask".
2025-10-09 21:56:55 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:56:56 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.980641s.
2025-10-09 21:56:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/PlotMosaicNoise".
2025-10-09 21:56:57 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:57:02 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.876559s.
2025-10-09 21:57:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/pre_clip".
2025-10-09 21:57:03 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:57:12 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 9.176158s.
2025-10-09 21:57:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/RotationMask".
2025-10-09 21:57:13 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:57:14 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.843856s.
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/PlotMosaicNoise".
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:57:20 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.97549s.
2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/b4fea93019e5725188be939cf5d394e000e2c821/shells".
2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000687s.
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/b4fea93019e5725188be939cf5d394e000e2c821/piesno".
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:24 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.940125s.
2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/shells".
2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000634s.
2025-10-09 21:57:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/piesno".
2025-10-09 21:57:27 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:28 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.897885s.
2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/shells".
2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:29 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000711s.
2025-10-09 21:57:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/piesno".
2025-10-09 21:57:31 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.260446s.
2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/9088a858dc43fcd3ced162096a91cf09e19184a7/shells".
2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:33 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.001107s.
2025-10-09 21:57:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/9088a858dc43fcd3ced162096a91cf09e19184a7/piesno".
2025-10-09 21:57:35 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.232883s.
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/f8b748529244e64474f1bb524d5c920cb33c448f/shells".
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000763s.
2025-10-09 21:57:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/f8b748529244e64474f1bb524d5c920cb33c448f/piesno".
2025-10-09 21:57:39 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:40 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.889158s.
2025-10-09 21:57:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/shells".
2025-10-09 21:57:41 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:41 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000686s.
2025-10-09 21:57:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/piesno".
2025-10-09 21:57:43 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:44 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.915654s.
2025-10-09 21:57:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/shells".
2025-10-09 21:57:45 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:45 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000726s.
2025-10-09 21:57:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/piesno".
2025-10-09 21:57:47 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:48 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.17042s.
2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/75046b00f18f651b68aaca60a1c4982df40d7fae/shells".
2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000716s.
2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/75046b00f18f651b68aaca60a1c4982df40d7fae/piesno".
2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:52 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.170385s.
2025-10-09 21:57:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/pre_n4".
2025-10-09 21:57:53 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 21:59:56 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 122.532315s.
2025-10-09 21:59:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/ds_report_background".
2025-10-09 21:59:57 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 21:59:57 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.008403s.
2025-10-09 21:59:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/pre_n4".
2025-10-09 21:59:58 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:02:01 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 123.21973s.
2025-10-09 22:02:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/ds_report_background".
2025-10-09 22:02:01 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:02:01 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.004722s.
2025-10-09 22:02:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/b4fea93019e5725188be939cf5d394e000e2c821/dwi_ref".
2025-10-09 22:02:02 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:02 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.496715s.
2025-10-09 22:02:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/b4fea93019e5725188be939cf5d394e000e2c821/get_lowb".
2025-10-09 22:02:03 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:04 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.319003s.
2025-10-09 22:02:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/dwi_ref".
2025-10-09 22:02:05 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:06 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.497582s.
2025-10-09 22:02:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/get_lowb".
2025-10-09 22:02:07 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:08 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.316247s.
2025-10-09 22:02:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/dwi_ref".
2025-10-09 22:02:09 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:10 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.688927s.
2025-10-09 22:02:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/get_lowb".
2025-10-09 22:02:11 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:12 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.434187s.
2025-10-09 22:02:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/9088a858dc43fcd3ced162096a91cf09e19184a7/dwi_ref".
2025-10-09 22:02:13 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:14 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.646436s.
2025-10-09 22:02:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/9088a858dc43fcd3ced162096a91cf09e19184a7/get_lowb".
2025-10-09 22:02:15 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:16 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.431815s.
2025-10-09 22:02:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/f8b748529244e64474f1bb524d5c920cb33c448f/dwi_ref".
2025-10-09 22:02:17 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:18 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.493605s.
2025-10-09 22:02:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/f8b748529244e64474f1bb524d5c920cb33c448f/get_lowb".
2025-10-09 22:02:19 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:20 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.308479s.
2025-10-09 22:02:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/dwi_ref".
2025-10-09 22:02:21 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:22 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.499615s.
2025-10-09 22:02:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/get_lowb".
2025-10-09 22:02:23 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:24 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.313667s.
2025-10-09 22:02:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/dwi_ref".
2025-10-09 22:02:25 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:26 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.633319s.
2025-10-09 22:02:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/get_lowb".
2025-10-09 22:02:27 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:28 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.383322s.
2025-10-09 22:02:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/75046b00f18f651b68aaca60a1c4982df40d7fae/dwi_ref".
2025-10-09 22:02:29 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:30 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.588777s.
2025-10-09 22:02:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/75046b00f18f651b68aaca60a1c4982df40d7fae/get_lowb".
2025-10-09 22:02:31 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:32 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.373457s.
2025-10-09 22:02:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/synthstrip".
2025-10-09 22:02:33 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:03:58 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 84.136418s.
2025-10-09 22:03:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/synthstrip".
2025-10-09 22:03:59 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:05:25 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 85.091762s.
2025-10-09 22:05:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4fea93019e5725188be939cf5d394e000e2c821/pre_clip".
2025-10-09 22:05:26 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:05:26 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.631311s.
2025-10-09 22:05:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4fea93019e5725188be939cf5d394e000e2c821/SharpenEPI".
2025-10-09 22:05:28 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:35 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.202281s.
2025-10-09 22:05:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/b4fea93019e5725188be939cf5d394e000e2c821/hmc_b0".
2025-10-09 22:05:36 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:05:55 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 19.104303s.
2025-10-09 22:05:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/pre_clip".
2025-10-09 22:05:56 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:05:56 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.632478s.
2025-10-09 22:05:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/SharpenEPI".
2025-10-09 22:05:58 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:05 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.243301s.
2025-10-09 22:06:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/hmc_b0".
2025-10-09 22:06:06 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:06:26 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.127925s.
2025-10-09 22:06:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/pre_clip".
2025-10-09 22:06:28 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:06:28 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.666828s.
2025-10-09 22:06:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/SharpenEPI".
2025-10-09 22:06:30 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:37 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.125749s.
2025-10-09 22:06:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/hmc_b0".
2025-10-09 22:06:38 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:02 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 24.430111s.
2025-10-09 22:07:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/pre_clip".
2025-10-09 22:07:04 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:04 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.6399s.
2025-10-09 22:07:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9088a858dc43fcd3ced162096a91cf09e19184a7/SharpenEPI".
2025-10-09 22:07:06 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:13 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.110743s.
2025-10-09 22:07:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/9088a858dc43fcd3ced162096a91cf09e19184a7/hmc_b0".
2025-10-09 22:07:14 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:40 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 25.997686s.
2025-10-09 22:07:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f8b748529244e64474f1bb524d5c920cb33c448f/pre_clip".
2025-10-09 22:07:42 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:42 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.56819s.
2025-10-09 22:07:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f8b748529244e64474f1bb524d5c920cb33c448f/SharpenEPI".
2025-10-09 22:07:44 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:51 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.066764s.
2025-10-09 22:07:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/f8b748529244e64474f1bb524d5c920cb33c448f/hmc_b0".
2025-10-09 22:07:52 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 19.426468s.
2025-10-09 22:08:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/pre_clip".
2025-10-09 22:08:12 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:12 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.57662s.
2025-10-09 22:08:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/SharpenEPI".
2025-10-09 22:08:14 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:21 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.116951s.
2025-10-09 22:08:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/hmc_b0".
2025-10-09 22:08:22 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:41 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 19.276061s.
2025-10-09 22:08:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/pre_clip".
2025-10-09 22:08:42 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:42 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.55634s.
2025-10-09 22:08:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/SharpenEPI".
2025-10-09 22:08:44 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:51 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.082072s.
2025-10-09 22:08:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/hmc_b0".
2025-10-09 22:08:52 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:17 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 25.019672s.
2025-10-09 22:09:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/pre_clip".
2025-10-09 22:09:18 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:09:18 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.576238s.
2025-10-09 22:09:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75046b00f18f651b68aaca60a1c4982df40d7fae/SharpenEPI".
2025-10-09 22:09:20 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:27 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.108094s.
2025-10-09 22:09:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/75046b00f18f651b68aaca60a1c4982df40d7fae/hmc_b0".
2025-10-09 22:09:28 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:52 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 24.753247s.
2025-10-09 22:09:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/post_n4".
2025-10-09 22:09:54 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:22 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 28.290413s.
2025-10-09 22:10:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/smoothness".
2025-10-09 22:10:24 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:10:29 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 5.525625s.
2025-10-09 22:10:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/PlotMosaicZoomed".
2025-10-09 22:10:30 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:10:35 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 4.986415s.
2025-10-09 22:10:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/PlotBrainmask".
2025-10-09 22:10:36 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:10:39 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.599631s.
2025-10-09 22:10:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/post_n4".
2025-10-09 22:10:40 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:02 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 21.868378s.
2025-10-09 22:11:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/smoothness".
2025-10-09 22:11:02 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:11:05 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 3.78422s.
2025-10-09 22:11:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/PlotMosaicZoomed".
2025-10-09 22:11:06 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:11:10 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 4.591122s.
2025-10-09 22:11:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/PlotBrainmask".
2025-10-09 22:11:12 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:11:15 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.640368s.
2025-10-09 22:11:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4fea93019e5725188be939cf5d394e000e2c821/pre_n4".
2025-10-09 22:11:16 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:23 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.135173s.
2025-10-09 22:11:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/pre_n4".
2025-10-09 22:11:24 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.077991s.
2025-10-09 22:11:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/pre_n4".
2025-10-09 22:11:32 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:39 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.071165s.
2025-10-09 22:11:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/pre_n4".
2025-10-09 22:11:40 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:47 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.021481s.
2025-10-09 22:11:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f8b748529244e64474f1bb524d5c920cb33c448f/pre_n4".
2025-10-09 22:11:48 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:55 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.033777s.
2025-10-09 22:11:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/pre_n4".
2025-10-09 22:11:56 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:03 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.043456s.
2025-10-09 22:12:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/pre_n4".
2025-10-09 22:12:04 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:11 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.030245s.
2025-10-09 22:12:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/pre_n4".
2025-10-09 22:12:12 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:19 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.026588s.
2025-10-09 22:12:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/final_masked".
2025-10-09 22:12:20 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:12:20 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.306109s.
2025-10-09 22:12:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/SpatialNormalization".
2025-10-09 22:12:22 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:12:22 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:13:36 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:13:36 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:13:52 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:13:53 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:13:53 | INFO | niworkflows | Generating visual report
2025-10-09 22:14:11 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 109.025879s.
2025-10-09 22:14:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/ds_report_zoomed".
2025-10-09 22:14:12 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:14:12 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.005045s.
2025-10-09 22:14:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/ds_report_bmask".
2025-10-09 22:14:12 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:14:12 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004678s.
2025-10-09 22:14:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/final_masked".
2025-10-09 22:14:12 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:14:12 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.280378s.
2025-10-09 22:14:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/SpatialNormalization".
2025-10-09 22:14:14 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:14:15 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:15:31 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:15:31 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:15:47 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:15:49 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:15:49 | INFO | niworkflows | Generating visual report
2025-10-09 22:16:06 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 112.119497s.
2025-10-09 22:16:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/ds_report_zoomed".
2025-10-09 22:16:08 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:16:08 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004855s.
2025-10-09 22:16:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/ds_report_bmask".
2025-10-09 22:16:08 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:16:08 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004705s.
2025-10-09 22:16:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4fea93019e5725188be939cf5d394e000e2c821/synthstrip".
2025-10-09 22:16:08 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:17:05 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 56.679762s.
2025-10-09 22:17:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/synthstrip".
2025-10-09 22:17:06 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 57.453397s.
2025-10-09 22:18:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/synthstrip".
2025-10-09 22:18:04 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:19:02 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 58.574845s.
2025-10-09 22:19:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/synthstrip".
2025-10-09 22:19:04 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:20:02 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 58.440559s.
2025-10-09 22:20:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f8b748529244e64474f1bb524d5c920cb33c448f/synthstrip".
2025-10-09 22:20:04 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:21:03 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 59.396607s.
2025-10-09 22:21:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/synthstrip".
2025-10-09 22:21:04 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:22:02 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 58.018563s.
2025-10-09 22:22:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/synthstrip".
2025-10-09 22:22:04 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:23:00 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 56.274684s.
2025-10-09 22:23:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/synthstrip".
2025-10-09 22:23:02 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:23:58 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 56.172908s.
2025-10-09 22:24:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/ds_report_norm".
2025-10-09 22:24:00 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:24:00 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004925s.
2025-10-09 22:24:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/1a315bf37a3633909f0a22f5c0fbc69f88cd99eb/ds_report_norm".
2025-10-09 22:24:00 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:24:00 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004778s.
2025-10-09 22:24:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4fea93019e5725188be939cf5d394e000e2c821/post_n4".
2025-10-09 22:24:00 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:24:03 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.580489s.
2025-10-09 22:24:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/b4fea93019e5725188be939cf5d394e000e2c821/sp_mask".
2025-10-09 22:24:04 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:24:05 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.646738s.
2025-10-09 22:24:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/b4fea93019e5725188be939cf5d394e000e2c821/drift".
2025-10-09 22:24:06 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:24:06 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0123, 1.0106, 1.0169, 1.0127, 1.0081, 0.9886.
2025-10-09 22:24:08 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.554009s.
2025-10-09 22:24:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4fea93019e5725188be939cf5d394e000e2c821/EPI2MNI".
2025-10-09 22:24:08 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:24:08 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:24:39 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4fea93019e5725188be939cf5d394e000e2c821/EPI2MNI/stderr.nipype-init).
2025-10-09 22:24:39 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:24:39 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4fea93019e5725188be939cf5d394e000e2c821/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4fea93019e5725188be939cf5d394e000e2c821/SharpenEPI/sub-cIVs038_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-116_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4fea93019e5725188be939cf5d394e000e2c821/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4fea93019e5725188be939cf5d394e000e2c821/SharpenEPI/sub-cIVs038_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-116_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4fea93019e5725188be939cf5d394e000e2c821/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4fea93019e5725188be939cf5d394e000e2c821/SharpenEPI/sub-cIVs038_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-116_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4fea93019e5725188be939cf5d394e000e2c821/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:25:46 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:25:46 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4fea93019e5725188be939cf5d394e000e2c821/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:25:46 | INFO | niworkflows | Generating visual report
2025-10-09 22:26:02 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 114.413305s.
2025-10-09 22:26:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/post_n4".
2025-10-09 22:26:04 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.419561s.
2025-10-09 22:26:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/sp_mask".
2025-10-09 22:26:08 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:26:09 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.601971s.
2025-10-09 22:26:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/drift".
2025-10-09 22:26:10 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:26:10 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0614, 1.0171, 1.0642, 1.0691, 1.0687, 1.0519.
2025-10-09 22:26:12 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.520547s.
2025-10-09 22:26:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/EPI2MNI".
2025-10-09 22:26:12 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:26:12 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:26:44 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/EPI2MNI/stderr.nipype-init).
2025-10-09 22:26:44 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:26:44 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/SharpenEPI/sub-cIVs038_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-219_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/SharpenEPI/sub-cIVs038_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-219_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/SharpenEPI/sub-cIVs038_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-219_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:27:45 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:27:45 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:27:45 | INFO | niworkflows | Generating visual report
2025-10-09 22:28:02 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 109.723697s.
2025-10-09 22:28:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/post_n4".
2025-10-09 22:28:02 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:28:05 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.512138s.
2025-10-09 22:28:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/sp_mask".
2025-10-09 22:28:06 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:28:07 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.906597s.
2025-10-09 22:28:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/drift".
2025-10-09 22:28:08 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:28:08 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.989, 1.0004, 1.0012, 0.9983, 0.9961, 0.9904, 0.9935, 1.0094.
2025-10-09 22:28:10 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.9768599999999998s.
2025-10-09 22:28:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/EPI2MNI".
2025-10-09 22:28:12 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:28:12 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:28:40 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/EPI2MNI/stderr.nipype-init).
2025-10-09 22:28:40 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:28:40 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/SharpenEPI/sub-cIVs038_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/SharpenEPI/sub-cIVs038_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/SharpenEPI/sub-cIVs038_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:29:44 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:29:44 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:29:44 | INFO | niworkflows | Generating visual report
2025-10-09 22:30:01 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 108.667022s.
2025-10-09 22:30:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/post_n4".
2025-10-09 22:30:02 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:30:05 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.487145s.
2025-10-09 22:30:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/9088a858dc43fcd3ced162096a91cf09e19184a7/sp_mask".
2025-10-09 22:30:06 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:30:07 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.940335s.
2025-10-09 22:30:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/9088a858dc43fcd3ced162096a91cf09e19184a7/drift".
2025-10-09 22:30:08 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:30:08 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9974, 0.9954, 0.9697, 0.9864, 0.9514, 0.9775, 0.9814, 1.0062.
2025-10-09 22:30:10 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.979752s.
2025-10-09 22:30:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9088a858dc43fcd3ced162096a91cf09e19184a7/EPI2MNI".
2025-10-09 22:30:12 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:30:12 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:30:41 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9088a858dc43fcd3ced162096a91cf09e19184a7/EPI2MNI/stderr.nipype-init).
2025-10-09 22:30:41 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:30:41 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9088a858dc43fcd3ced162096a91cf09e19184a7/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9088a858dc43fcd3ced162096a91cf09e19184a7/SharpenEPI/sub-cIVs038_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9088a858dc43fcd3ced162096a91cf09e19184a7/SharpenEPI/sub-cIVs038_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9088a858dc43fcd3ced162096a91cf09e19184a7/SharpenEPI/sub-cIVs038_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:31:48 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:31:48 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9088a858dc43fcd3ced162096a91cf09e19184a7/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:31:48 | INFO | niworkflows | Generating visual report
2025-10-09 22:32:05 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 112.656521s.
2025-10-09 22:32:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f8b748529244e64474f1bb524d5c920cb33c448f/post_n4".
2025-10-09 22:32:06 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:32:08 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.100627s.
2025-10-09 22:32:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/f8b748529244e64474f1bb524d5c920cb33c448f/sp_mask".
2025-10-09 22:32:10 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:32:11 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.525151s.
2025-10-09 22:32:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/f8b748529244e64474f1bb524d5c920cb33c448f/drift".
2025-10-09 22:32:12 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:32:12 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0008, 0.9991, 1.0047, 1.0023, 1.0009, 0.9907.
2025-10-09 22:32:14 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.41277s.
2025-10-09 22:32:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f8b748529244e64474f1bb524d5c920cb33c448f/EPI2MNI".
2025-10-09 22:32:14 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:32:14 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:32:45 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f8b748529244e64474f1bb524d5c920cb33c448f/EPI2MNI/stderr.nipype-init).
2025-10-09 22:32:45 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:32:45 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f8b748529244e64474f1bb524d5c920cb33c448f/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f8b748529244e64474f1bb524d5c920cb33c448f/SharpenEPI/sub-cIVs038_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f8b748529244e64474f1bb524d5c920cb33c448f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f8b748529244e64474f1bb524d5c920cb33c448f/SharpenEPI/sub-cIVs038_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f8b748529244e64474f1bb524d5c920cb33c448f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f8b748529244e64474f1bb524d5c920cb33c448f/SharpenEPI/sub-cIVs038_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f8b748529244e64474f1bb524d5c920cb33c448f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:33:51 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:33:51 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f8b748529244e64474f1bb524d5c920cb33c448f/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:33:51 | INFO | niworkflows | Generating visual report
2025-10-09 22:34:08 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 114.039065s.
2025-10-09 22:34:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/post_n4".
2025-10-09 22:34:10 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:34:12 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.093069s.
2025-10-09 22:34:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/sp_mask".
2025-10-09 22:34:14 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:34:15 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.554365s.
2025-10-09 22:34:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/drift".
2025-10-09 22:34:16 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:34:17 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0006, 1.0024, 1.0063, 0.9997, 1.0042, 0.9973.
2025-10-09 22:34:18 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.4387240000000001s.
2025-10-09 22:34:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/EPI2MNI".
2025-10-09 22:34:18 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:34:18 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:34:48 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:34:48 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/SharpenEPI/sub-cIVs038_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/SharpenEPI/sub-cIVs038_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/SharpenEPI/sub-cIVs038_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:35:55 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:35:55 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:35:55 | INFO | niworkflows | Generating visual report
2025-10-09 22:36:12 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 113.723168s.
2025-10-09 22:36:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/post_n4".
2025-10-09 22:36:12 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:36:14 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.062953s.
2025-10-09 22:36:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/sp_mask".
2025-10-09 22:36:16 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:36:17 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.752415s.
2025-10-09 22:36:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/drift".
2025-10-09 22:36:18 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:36:19 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9999, 0.9999, 1.0102, 1.0076, 1.0071, 1.0092, 1.0099, 0.9923.
2025-10-09 22:36:20 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.841396s.
2025-10-09 22:36:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/EPI2MNI".
2025-10-09 22:36:20 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:36:20 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:36:49 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/EPI2MNI/stderr.nipype-init).
2025-10-09 22:36:49 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:36:49 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/SharpenEPI/sub-cIVs038_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/SharpenEPI/sub-cIVs038_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/SharpenEPI/sub-cIVs038_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:37:55 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:37:55 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:37:55 | INFO | niworkflows | Generating visual report
2025-10-09 22:38:12 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 111.500221s.
2025-10-09 22:38:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/post_n4".
2025-10-09 22:38:12 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:38:15 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.042648s.
2025-10-09 22:38:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/75046b00f18f651b68aaca60a1c4982df40d7fae/sp_mask".
2025-10-09 22:38:16 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:38:17 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.715985s.
2025-10-09 22:38:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/75046b00f18f651b68aaca60a1c4982df40d7fae/drift".
2025-10-09 22:38:18 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:38:19 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9986, 0.9976, 1.001, 1.0049, 1.0065, 1.007, 1.0075, 0.992.
2025-10-09 22:38:20 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.7708469999999998s.
2025-10-09 22:38:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75046b00f18f651b68aaca60a1c4982df40d7fae/EPI2MNI".
2025-10-09 22:38:20 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:38:20 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:38:51 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:38:51 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75046b00f18f651b68aaca60a1c4982df40d7fae/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75046b00f18f651b68aaca60a1c4982df40d7fae/SharpenEPI/sub-cIVs038_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75046b00f18f651b68aaca60a1c4982df40d7fae/SharpenEPI/sub-cIVs038_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75046b00f18f651b68aaca60a1c4982df40d7fae/SharpenEPI/sub-cIVs038_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:39:54 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:39:54 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75046b00f18f651b68aaca60a1c4982df40d7fae/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:39:54 | INFO | niworkflows | Generating visual report
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 109.853501s.
2025-10-09 22:40:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4fea93019e5725188be939cf5d394e000e2c821/final_masked".
2025-10-09 22:40:11 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:40:11 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.035506s.
2025-10-09 22:40:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/b4fea93019e5725188be939cf5d394e000e2c821/dwidenoise".
2025-10-09 22:40:13 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:40:35 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 22.743142s.
2025-10-09 22:40:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4fea93019e5725188be939cf5d394e000e2c821/ResampleSegmentation".
2025-10-09 22:40:37 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:40:41 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.968983s.
2025-10-09 22:40:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/final_masked".
2025-10-09 22:40:43 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:40:43 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.035087s.
2025-10-09 22:40:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/dwidenoise".
2025-10-09 22:40:45 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:41:06 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 21.590441s.
2025-10-09 22:41:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/ResampleSegmentation".
2025-10-09 22:41:07 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:41:10 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.923298s.
2025-10-09 22:41:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/final_masked".
2025-10-09 22:41:13 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:41:13 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.038939s.
2025-10-09 22:41:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/dwidenoise".
2025-10-09 22:41:15 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:41:56 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 41.18933s.
2025-10-09 22:41:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/ResampleSegmentation".
2025-10-09 22:41:57 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:42:01 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.975505s.
2025-10-09 22:42:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/final_masked".
2025-10-09 22:42:03 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:42:03 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.035384s.
2025-10-09 22:42:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/9088a858dc43fcd3ced162096a91cf09e19184a7/dwidenoise".
2025-10-09 22:42:05 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:42:46 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 41.045196s.
2025-10-09 22:42:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9088a858dc43fcd3ced162096a91cf09e19184a7/ResampleSegmentation".
2025-10-09 22:42:47 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:42:50 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.758091s.
2025-10-09 22:42:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f8b748529244e64474f1bb524d5c920cb33c448f/final_masked".
2025-10-09 22:42:51 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:42:51 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.043197s.
2025-10-09 22:42:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/f8b748529244e64474f1bb524d5c920cb33c448f/dwidenoise".
2025-10-09 22:42:53 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:43:09 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 16.793004s.
2025-10-09 22:43:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f8b748529244e64474f1bb524d5c920cb33c448f/ResampleSegmentation".
2025-10-09 22:43:11 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:43:14 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.095372s.
2025-10-09 22:43:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/final_masked".
2025-10-09 22:43:15 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:43:15 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.03051s.
2025-10-09 22:43:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/dwidenoise".
2025-10-09 22:43:17 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:43:33 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 16.752092s.
2025-10-09 22:43:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/ResampleSegmentation".
2025-10-09 22:43:35 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:43:38 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.909423s.
2025-10-09 22:43:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/final_masked".
2025-10-09 22:43:39 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:43:39 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.030401s.
2025-10-09 22:43:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/dwidenoise".
2025-10-09 22:43:41 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:44:11 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 29.896102s.
2025-10-09 22:44:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/ResampleSegmentation".
2025-10-09 22:44:13 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:44:16 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.100079s.
2025-10-09 22:44:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/final_masked".
2025-10-09 22:44:17 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:44:17 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.030091s.
2025-10-09 22:44:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/75046b00f18f651b68aaca60a1c4982df40d7fae/dwidenoise".
2025-10-09 22:44:19 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:44:49 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 30.026429s.
2025-10-09 22:44:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/75046b00f18f651b68aaca60a1c4982df40d7fae/ResampleSegmentation".
2025-10-09 22:44:51 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:44:54 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.128602s.
2025-10-09 22:44:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/b4fea93019e5725188be939cf5d394e000e2c821/dwimodel".
2025-10-09 22:44:55 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:44:59 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.189162s.
2025-10-09 22:45:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/b4fea93019e5725188be939cf5d394e000e2c821/estimate_sigma".
2025-10-09 22:45:01 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:01 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.039982s.
2025-10-09 22:45:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4fea93019e5725188be939cf5d394e000e2c821/get_wm".
2025-10-09 22:45:03 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:03 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035302s.
2025-10-09 22:45:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/dwimodel".
2025-10-09 22:45:05 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:45:09 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.013511s.
2025-10-09 22:45:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/estimate_sigma".
2025-10-09 22:45:11 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:11 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.039196s.
2025-10-09 22:45:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/get_wm".
2025-10-09 22:45:13 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:13 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035911s.
2025-10-09 22:45:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/dwimodel".
2025-10-09 22:45:15 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:45:19 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.665333s.
2025-10-09 22:45:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/estimate_sigma".
2025-10-09 22:45:21 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:21 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.037971s.
2025-10-09 22:45:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/get_wm".
2025-10-09 22:45:23 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:23 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035566s.
2025-10-09 22:45:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/9088a858dc43fcd3ced162096a91cf09e19184a7/dwimodel".
2025-10-09 22:45:25 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:45:29 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.645886s.
2025-10-09 22:45:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/9088a858dc43fcd3ced162096a91cf09e19184a7/estimate_sigma".
2025-10-09 22:45:31 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:31 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.039766s.
2025-10-09 22:45:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/get_wm".
2025-10-09 22:45:33 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:33 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035053s.
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/f8b748529244e64474f1bb524d5c920cb33c448f/dwimodel".
2025-10-09 22:45:35 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:45:38 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.123944s.
2025-10-09 22:45:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/f8b748529244e64474f1bb524d5c920cb33c448f/estimate_sigma".
2025-10-09 22:45:39 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:39 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.037041s.
2025-10-09 22:45:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f8b748529244e64474f1bb524d5c920cb33c448f/get_wm".
2025-10-09 22:45:41 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:41 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035756s.
2025-10-09 22:45:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/dwimodel".
2025-10-09 22:45:43 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:45:46 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.134056s.
2025-10-09 22:45:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/estimate_sigma".
2025-10-09 22:45:47 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:47 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.035802s.
2025-10-09 22:45:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/get_wm".
2025-10-09 22:45:49 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:49 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035388s.
2025-10-09 22:45:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/dwimodel".
2025-10-09 22:45:51 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:45:54 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.440672s.
2025-10-09 22:45:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/estimate_sigma".
2025-10-09 22:45:55 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:55 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036282s.
2025-10-09 22:45:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/get_wm".
2025-10-09 22:45:57 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:45:57 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.049836s.
2025-10-09 22:45:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/75046b00f18f651b68aaca60a1c4982df40d7fae/dwimodel".
2025-10-09 22:45:59 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:46:02 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.481108s.
2025-10-09 22:46:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/75046b00f18f651b68aaca60a1c4982df40d7fae/estimate_sigma".
2025-10-09 22:46:03 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:46:03 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.035976s.
2025-10-09 22:46:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/get_wm".
2025-10-09 22:46:05 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:46:05 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.036739s.
2025-10-09 22:46:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/b4fea93019e5725188be939cf5d394e000e2c821/cc_mask".
2025-10-09 22:46:07 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:46:07 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.536727s.
2025-10-09 22:46:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4fea93019e5725188be939cf5d394e000e2c821/mosaic_fa".
2025-10-09 22:46:09 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:46:10 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.339278s.
2025-10-09 22:46:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4fea93019e5725188be939cf5d394e000e2c821/mosaic_md".
2025-10-09 22:46:11 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:46:12 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.3988450000000001s.
2025-10-09 22:46:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4fea93019e5725188be939cf5d394e000e2c821/plot_heatmap".
2025-10-09 22:46:13 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:46:14 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.480088s.
2025-10-09 22:46:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/cc_mask".
2025-10-09 22:46:15 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:46:15 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.508389s.
2025-10-09 22:46:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/mosaic_fa".
2025-10-09 22:46:17 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:46:18 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.316718s.
2025-10-09 22:46:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/mosaic_md".
2025-10-09 22:46:19 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:46:20 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.592352s.
2025-10-09 22:46:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/plot_heatmap".
2025-10-09 22:46:21 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:46:22 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.166751s.
2025-10-09 22:46:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/cc_mask".
2025-10-09 22:46:23 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:46:23 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.508388s.
2025-10-09 22:46:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/mosaic_fa".
2025-10-09 22:46:25 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:46:26 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.430044s.
2025-10-09 22:46:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/mosaic_md".
2025-10-09 22:46:27 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:46:28 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.363599s.
2025-10-09 22:46:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/plot_heatmap".
2025-10-09 22:46:29 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:46:30 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.4463599999999999s.
2025-10-09 22:46:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/9088a858dc43fcd3ced162096a91cf09e19184a7/cc_mask".
2025-10-09 22:46:31 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:46:31 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.533363s.
2025-10-09 22:46:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/mosaic_fa".
2025-10-09 22:46:33 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:46:34 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.326204s.
2025-10-09 22:46:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/mosaic_md".
2025-10-09 22:46:35 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:46:36 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.589253s.
2025-10-09 22:46:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/plot_heatmap".
2025-10-09 22:46:37 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:46:38 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.22577s.
2025-10-09 22:46:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/f8b748529244e64474f1bb524d5c920cb33c448f/cc_mask".
2025-10-09 22:46:39 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:46:39 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.522335s.
2025-10-09 22:46:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f8b748529244e64474f1bb524d5c920cb33c448f/mosaic_fa".
2025-10-09 22:46:41 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:46:42 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.449782s.
2025-10-09 22:46:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f8b748529244e64474f1bb524d5c920cb33c448f/mosaic_md".
2025-10-09 22:46:43 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:46:44 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.604439s.
2025-10-09 22:46:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f8b748529244e64474f1bb524d5c920cb33c448f/plot_heatmap".
2025-10-09 22:46:45 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:46:46 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.097869s.
2025-10-09 22:46:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/cc_mask".
2025-10-09 22:46:47 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:46:47 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.489882s.
2025-10-09 22:46:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/mosaic_fa".
2025-10-09 22:46:49 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:46:50 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.553685s.
2025-10-09 22:46:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/mosaic_md".
2025-10-09 22:46:51 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:46:52 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.741387s.
2025-10-09 22:46:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/plot_heatmap".
2025-10-09 22:46:53 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:46:54 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.131713s.
2025-10-09 22:46:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/cc_mask".
2025-10-09 22:46:55 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:46:55 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.509841s.
2025-10-09 22:46:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/mosaic_fa".
2025-10-09 22:46:57 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:46:58 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.500945s.
2025-10-09 22:46:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/mosaic_md".
2025-10-09 22:46:59 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:47:00 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.6090339999999999s.
2025-10-09 22:47:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/plot_heatmap".
2025-10-09 22:47:01 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:47:02 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.195179s.
2025-10-09 22:47:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/75046b00f18f651b68aaca60a1c4982df40d7fae/cc_mask".
2025-10-09 22:47:03 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:47:03 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.518075s.
2025-10-09 22:47:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/mosaic_fa".
2025-10-09 22:47:05 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:47:06 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.537049s.
2025-10-09 22:47:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/mosaic_md".
2025-10-09 22:47:07 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:47:08 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.782055s.
2025-10-09 22:47:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/plot_heatmap".
2025-10-09 22:47:09 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:47:10 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.196964s.
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4fea93019e5725188be939cf5d394e000e2c821/ds_report_fa".
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.00476s.
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4fea93019e5725188be939cf5d394e000e2c821/ds_report_md".
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004786s.
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4fea93019e5725188be939cf5d394e000e2c821/ds_report_hm".
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004922s.
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/ds_report_fa".
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005043s.
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/ds_report_md".
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005282s.
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fa7a8477d2108656d8ad7d6b541d5a673ddbdf10/ds_report_hm".
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.006107s.
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/ds_report_fa".
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.0047s.
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/ds_report_md".
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004704s.
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b99b2d1cb6d626c3e8bc5ed414d674a3110acbd6/ds_report_hm".
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004606s.
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/ds_report_fa".
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004702s.
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/ds_report_md".
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.00459s.
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9088a858dc43fcd3ced162096a91cf09e19184a7/ds_report_hm".
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004702s.
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f8b748529244e64474f1bb524d5c920cb33c448f/ds_report_fa".
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004702s.
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f8b748529244e64474f1bb524d5c920cb33c448f/ds_report_md".
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004688s.
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f8b748529244e64474f1bb524d5c920cb33c448f/ds_report_hm".
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004715s.
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/ds_report_fa".
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004621s.
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/ds_report_md".
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004742s.
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/df8d12b9b97b9d4a69ff7942daab2a78389d09a4/ds_report_hm".
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004712s.
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/ds_report_fa".
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004616s.
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/ds_report_md".
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004789s.
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8cf8fa98ca2c5e9f09b1cc7d092251b8b81f86ca/ds_report_hm".
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004793s.
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/ds_report_fa".
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004981s.
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/ds_report_md".
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.009714s.
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/75046b00f18f651b68aaca60a1c4982df40d7fae/ds_report_hm".
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004769s.
2025-10-09 22:47:14 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:47:14 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:47:24 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 9.943233s.
2025-10-09 22:47:24 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:47:24 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:47:34 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 9.933284s.
2025-10-09 22:47:36 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:47:36 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:47:46 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 9.869135s.
2025-10-09 22:47:46 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:47:46 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:47:46 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:47:46 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:47:46 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:47:46 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:47:46 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:47:46 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:47:46 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:47:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/Enhance".
2025-10-09 22:47:48 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:48 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.623967s.
2025-10-09 22:47:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/format_tpm_names".
2025-10-09 22:47:50 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:52 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.9896340000000001s.
2025-10-09 22:47:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/Grad".
2025-10-09 22:47:54 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:48:00 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 6.560138s.
2025-10-09 22:48:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/apply_mask".
2025-10-09 22:48:02 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:48:02 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.301868s.
2025-10-09 22:48:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/GradientThreshold".
2025-10-09 22:48:04 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:48:17 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 13.170076s.
2025-10-09 22:48:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/segmentation".
2025-10-09 22:48:18 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:50:01 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 103.13619s.
2025-10-09 22:50:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/ArtifactMask".
2025-10-09 22:50:02 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:50:08 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 5.914253s.
2025-10-09 22:50:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/PlotHeadmask".
2025-10-09 22:50:10 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:50:13 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 2.9860379999999997s.
2025-10-09 22:50:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/harmonize".
2025-10-09 22:50:14 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:50:15 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 1.007116s.
2025-10-09 22:50:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/PlotSegmentation".
2025-10-09 22:50:16 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:50:19 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 3.339095s.
2025-10-09 22:50:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/provenance".
2025-10-09 22:50:20 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:50:20 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.055826s.
2025-10-09 22:50:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/ComputeQI2".
2025-10-09 22:50:20 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:50:20 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.270621s.
2025-10-09 22:50:20 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:50:20 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/d8484e9ba1ea5eeff3a306b15c4b65aa4d0434d5/ComputeQI2)
2025-10-09 22:50:20 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=239) crashed: /var/lib/condor/execute/dir_3951234/ds/logs/crash-20251009-225020-fhoffstaedter-ComputeQI2.a0-41d47166-27bd-455b-b5eb-05cc4007f579.txt
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx1/anat/sub-cIVs038_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx1/dwi/sub-cIVs038_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-115_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx1/dwi/sub-cIVs038_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-218_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx1/dwi/sub-cIVs038_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-116_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx1/dwi/sub-cIVs038_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-219_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx1/dwi/sub-cIVs038_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-114_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx1/dwi/sub-cIVs038_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx2/anat/sub-cIVs038_ses-s1Bx2_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx2/dwi/sub-cIVs038_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx2/dwi/sub-cIVs038_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx2/dwi/sub-cIVs038_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx2/dwi/sub-cIVs038_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx2/dwi/sub-cIVs038_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038/ses-s1Bx2/dwi/sub-cIVs038_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs038 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_3951234/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 16)
run (error: 1)
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