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ds003416-mriqc/logs/sub-cIVs036_10066449.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

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install(ok): /var/lib/condor/execute/dir_3950016/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3950016/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3950016/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_3950016/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:55:17 | IMPORTANT | mriqc | Extracting metadata and entities for 2 input runs of modality 't1w'...
2025-10-09 21:55:17 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:55:17 | IMPORTANT | mriqc | Extracting metadata and entities for 12 input runs of modality 'dwi'...
2025-10-09 21:55:17 | WARNING | nipype.workflow | 4 cannot be processed (too short or too long)
2025-10-09 21:55:17 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:55:17 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215515_a7b27974-ff6b-4203-b7ba-3e6e66666cbd.toml.
2025-10-09 21:55:22 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:55:23 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:55:23 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 8 NIfTI files..
2025-10-09 21:55:24 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 2 NIfTI files..
2025-10-09 21:55:28 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:55:33 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:55:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/2b2d3c115460697810aa6e566fffc37666a9f484/conform".
2025-10-09 21:55:33 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:55:33 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.282385s.
2025-10-09 21:55:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/6f0946c97db40acfb80a38e1843efc01c11019a6/conform".
2025-10-09 21:55:35 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:55:36 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.676931s.
2025-10-09 21:55:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/236bbb76ecc24fb647782bc60715b49a76dfe113/load_bmat".
2025-10-09 21:55:37 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:37 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.182353s.
2025-10-09 21:55:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/236bbb76ecc24fb647782bc60715b49a76dfe113/sanitize".
2025-10-09 21:55:39 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:55:40 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.771231s.
2025-10-09 21:55:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/236bbb76ecc24fb647782bc60715b49a76dfe113/provenance".
2025-10-09 21:55:41 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:55:41 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.019241s.
2025-10-09 21:55:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/6475a5e25c8b09c74df8a7d29e521054060a4ef8/load_bmat".
2025-10-09 21:55:41 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:41 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023525s.
2025-10-09 21:55:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/6475a5e25c8b09c74df8a7d29e521054060a4ef8/sanitize".
2025-10-09 21:55:43 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:55:44 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.763169s.
2025-10-09 21:55:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/6475a5e25c8b09c74df8a7d29e521054060a4ef8/provenance".
2025-10-09 21:55:45 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:55:45 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.01933s.
2025-10-09 21:55:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/57a06f16a92d2ad1f4a562c26b46a8f706226115/load_bmat".
2025-10-09 21:55:45 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:45 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.025174s.
2025-10-09 21:55:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/57a06f16a92d2ad1f4a562c26b46a8f706226115/sanitize".
2025-10-09 21:55:47 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:55:48 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.035967s.
2025-10-09 21:55:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/57a06f16a92d2ad1f4a562c26b46a8f706226115/provenance".
2025-10-09 21:55:49 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:55:49 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.024972s.
2025-10-09 21:55:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/4345003aa6c08d224f3c4244755d10e0065d2e8a/load_bmat".
2025-10-09 21:55:49 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:49 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024696s.
2025-10-09 21:55:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/4345003aa6c08d224f3c4244755d10e0065d2e8a/sanitize".
2025-10-09 21:55:51 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:55:52 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.034611s.
2025-10-09 21:55:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/4345003aa6c08d224f3c4244755d10e0065d2e8a/provenance".
2025-10-09 21:55:53 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:55:53 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.024814s.
2025-10-09 21:55:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/load_bmat".
2025-10-09 21:55:53 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:53 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.026705s.
2025-10-09 21:55:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/sanitize".
2025-10-09 21:55:55 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:55:56 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.820996s.
2025-10-09 21:55:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/provenance".
2025-10-09 21:55:57 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:55:57 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.020561s.
2025-10-09 21:55:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/load_bmat".
2025-10-09 21:55:57 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:55:57 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.025438s.
2025-10-09 21:55:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/sanitize".
2025-10-09 21:55:59 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:00 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.818019s.
2025-10-09 21:56:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/provenance".
2025-10-09 21:56:01 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:56:01 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.020654s.
2025-10-09 21:56:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/205beea3244e0319e4138418fc6ddf8005bb8187/load_bmat".
2025-10-09 21:56:01 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:56:01 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.025807s.
2025-10-09 21:56:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/205beea3244e0319e4138418fc6ddf8005bb8187/sanitize".
2025-10-09 21:56:03 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:04 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.078886s.
2025-10-09 21:56:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/205beea3244e0319e4138418fc6ddf8005bb8187/provenance".
2025-10-09 21:56:05 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:56:05 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.025297s.
2025-10-09 21:56:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/31a2d952960bb394156b6f306bdb218d1a3780a3/load_bmat".
2025-10-09 21:56:05 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:56:05 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.026263s.
2025-10-09 21:56:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/31a2d952960bb394156b6f306bdb218d1a3780a3/sanitize".
2025-10-09 21:56:07 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:08 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.065386s.
2025-10-09 21:56:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/31a2d952960bb394156b6f306bdb218d1a3780a3/provenance".
2025-10-09 21:56:09 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:56:09 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.026032s.
2025-10-09 21:56:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/2b2d3c115460697810aa6e566fffc37666a9f484/pre_clip".
2025-10-09 21:56:09 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:56:19 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 9.936881s.
2025-10-09 21:56:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/2b2d3c115460697810aa6e566fffc37666a9f484/RotationMask".
2025-10-09 21:56:21 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:56:22 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.688175s.
2025-10-09 21:56:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/2b2d3c115460697810aa6e566fffc37666a9f484/PlotMosaicNoise".
2025-10-09 21:56:23 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:56:28 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.994493s.
2025-10-09 21:56:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6f0946c97db40acfb80a38e1843efc01c11019a6/pre_clip".
2025-10-09 21:56:29 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:56:40 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 11.147811s.
2025-10-09 21:56:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/6f0946c97db40acfb80a38e1843efc01c11019a6/RotationMask".
2025-10-09 21:56:41 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:56:42 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.981119s.
2025-10-09 21:56:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6f0946c97db40acfb80a38e1843efc01c11019a6/PlotMosaicNoise".
2025-10-09 21:56:43 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:56:48 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.408366s.
2025-10-09 21:56:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/236bbb76ecc24fb647782bc60715b49a76dfe113/shells".
2025-10-09 21:56:49 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:56:49 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000673s.
2025-10-09 21:56:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/236bbb76ecc24fb647782bc60715b49a76dfe113/piesno".
2025-10-09 21:56:51 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:56:52 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.199584s.
2025-10-09 21:56:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/6475a5e25c8b09c74df8a7d29e521054060a4ef8/shells".
2025-10-09 21:56:53 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:56:53 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000639s.
2025-10-09 21:56:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/6475a5e25c8b09c74df8a7d29e521054060a4ef8/piesno".
2025-10-09 21:56:55 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:56:56 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.127076s.
2025-10-09 21:56:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/57a06f16a92d2ad1f4a562c26b46a8f706226115/shells".
2025-10-09 21:56:57 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:56:57 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000683s.
2025-10-09 21:56:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/57a06f16a92d2ad1f4a562c26b46a8f706226115/piesno".
2025-10-09 21:56:59 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:00 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.347926s.
2025-10-09 21:57:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/4345003aa6c08d224f3c4244755d10e0065d2e8a/shells".
2025-10-09 21:57:01 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:01 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000678s.
2025-10-09 21:57:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/4345003aa6c08d224f3c4244755d10e0065d2e8a/piesno".
2025-10-09 21:57:03 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:04 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.386722s.
2025-10-09 21:57:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/shells".
2025-10-09 21:57:05 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:05 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000736s.
2025-10-09 21:57:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/piesno".
2025-10-09 21:57:07 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:08 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.960963s.
2025-10-09 21:57:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/shells".
2025-10-09 21:57:09 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:09 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000737s.
2025-10-09 21:57:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/piesno".
2025-10-09 21:57:11 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:12 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.099143s.
2025-10-09 21:57:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/205beea3244e0319e4138418fc6ddf8005bb8187/shells".
2025-10-09 21:57:13 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:13 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000686s.
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/205beea3244e0319e4138418fc6ddf8005bb8187/piesno".
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:16 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.378425s.
2025-10-09 21:57:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/31a2d952960bb394156b6f306bdb218d1a3780a3/shells".
2025-10-09 21:57:17 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:17 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000763s.
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/31a2d952960bb394156b6f306bdb218d1a3780a3/piesno".
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:20 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.331799s.
2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/2b2d3c115460697810aa6e566fffc37666a9f484/pre_n4".
2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 21:59:31 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 130.089302s.
2025-10-09 21:59:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/2b2d3c115460697810aa6e566fffc37666a9f484/ds_report_background".
2025-10-09 21:59:33 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 21:59:33 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.008657s.
2025-10-09 21:59:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6f0946c97db40acfb80a38e1843efc01c11019a6/pre_n4".
2025-10-09 21:59:33 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:01:52 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 138.919731s.
2025-10-09 22:01:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6f0946c97db40acfb80a38e1843efc01c11019a6/ds_report_background".
2025-10-09 22:01:53 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:01:53 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.005347s.
2025-10-09 22:01:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/236bbb76ecc24fb647782bc60715b49a76dfe113/dwi_ref".
2025-10-09 22:01:53 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:54 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.647079s.
2025-10-09 22:01:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/236bbb76ecc24fb647782bc60715b49a76dfe113/get_lowb".
2025-10-09 22:01:55 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:55 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.376838s.
2025-10-09 22:01:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/6475a5e25c8b09c74df8a7d29e521054060a4ef8/dwi_ref".
2025-10-09 22:01:57 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:58 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.575645s.
2025-10-09 22:01:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/6475a5e25c8b09c74df8a7d29e521054060a4ef8/get_lowb".
2025-10-09 22:01:59 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:59 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.371084s.
2025-10-09 22:02:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/57a06f16a92d2ad1f4a562c26b46a8f706226115/dwi_ref".
2025-10-09 22:02:01 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:02 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.81094s.
2025-10-09 22:02:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/57a06f16a92d2ad1f4a562c26b46a8f706226115/get_lowb".
2025-10-09 22:02:03 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:04 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.979795s.
2025-10-09 22:02:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/4345003aa6c08d224f3c4244755d10e0065d2e8a/dwi_ref".
2025-10-09 22:02:05 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:07 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 1.565456s.
2025-10-09 22:02:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/4345003aa6c08d224f3c4244755d10e0065d2e8a/get_lowb".
2025-10-09 22:02:07 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:08 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.495037s.
2025-10-09 22:02:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/dwi_ref".
2025-10-09 22:02:09 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:10 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.77111s.
2025-10-09 22:02:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/get_lowb".
2025-10-09 22:02:11 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:11 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.382785s.
2025-10-09 22:02:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/dwi_ref".
2025-10-09 22:02:13 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:15 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 2.335346s.
2025-10-09 22:02:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/get_lowb".
2025-10-09 22:02:17 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:18 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 1.425207s.
2025-10-09 22:02:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/205beea3244e0319e4138418fc6ddf8005bb8187/dwi_ref".
2025-10-09 22:02:19 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:20 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.917943s.
2025-10-09 22:02:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/205beea3244e0319e4138418fc6ddf8005bb8187/get_lowb".
2025-10-09 22:02:21 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:22 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.649935s.
2025-10-09 22:02:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/31a2d952960bb394156b6f306bdb218d1a3780a3/dwi_ref".
2025-10-09 22:02:23 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:26 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 3.057926s.
2025-10-09 22:02:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/31a2d952960bb394156b6f306bdb218d1a3780a3/get_lowb".
2025-10-09 22:02:27 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:28 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.582765s.
2025-10-09 22:02:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/2b2d3c115460697810aa6e566fffc37666a9f484/synthstrip".
2025-10-09 22:02:29 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:04:06 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 97.293867s.
2025-10-09 22:04:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6f0946c97db40acfb80a38e1843efc01c11019a6/synthstrip".
2025-10-09 22:04:07 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:05:36 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 89.030083s.
2025-10-09 22:05:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/pre_clip".
2025-10-09 22:05:37 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:05:38 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.706506s.
2025-10-09 22:05:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/236bbb76ecc24fb647782bc60715b49a76dfe113/SharpenEPI".
2025-10-09 22:05:39 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:47 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.0307s.
2025-10-09 22:05:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/236bbb76ecc24fb647782bc60715b49a76dfe113/hmc_b0".
2025-10-09 22:05:49 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:06:11 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 21.872644s.
2025-10-09 22:06:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/pre_clip".
2025-10-09 22:06:13 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:06:14 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.686028s.
2025-10-09 22:06:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6475a5e25c8b09c74df8a7d29e521054060a4ef8/SharpenEPI".
2025-10-09 22:06:15 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:23 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.826876s.
2025-10-09 22:06:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/6475a5e25c8b09c74df8a7d29e521054060a4ef8/hmc_b0".
2025-10-09 22:06:23 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:06:45 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 21.769379s.
2025-10-09 22:06:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/pre_clip".
2025-10-09 22:06:45 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:06:46 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.703133s.
2025-10-09 22:06:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/57a06f16a92d2ad1f4a562c26b46a8f706226115/SharpenEPI".
2025-10-09 22:06:47 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:55 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.024561s.
2025-10-09 22:06:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/57a06f16a92d2ad1f4a562c26b46a8f706226115/hmc_b0".
2025-10-09 22:06:57 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:25 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 28.200557s.
2025-10-09 22:07:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/pre_clip".
2025-10-09 22:07:27 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:28 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.714252s.
2025-10-09 22:07:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4345003aa6c08d224f3c4244755d10e0065d2e8a/SharpenEPI".
2025-10-09 22:07:29 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:37 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.080629s.
2025-10-09 22:07:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/4345003aa6c08d224f3c4244755d10e0065d2e8a/hmc_b0".
2025-10-09 22:07:39 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:08 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 29.044654s.
2025-10-09 22:08:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/pre_clip".
2025-10-09 22:08:09 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:10 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.731787s.
2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/SharpenEPI".
2025-10-09 22:08:11 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:20 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.362823s.
2025-10-09 22:08:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/hmc_b0".
2025-10-09 22:08:21 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:45 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 23.356688s.
2025-10-09 22:08:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/pre_clip".
2025-10-09 22:08:45 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:46 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.765298s.
2025-10-09 22:08:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/SharpenEPI".
2025-10-09 22:08:47 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:56 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.378999s.
2025-10-09 22:08:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/hmc_b0".
2025-10-09 22:08:57 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:20 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 23.066483s.
2025-10-09 22:09:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/205beea3244e0319e4138418fc6ddf8005bb8187/pre_clip".
2025-10-09 22:09:21 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:09:22 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.677624s.
2025-10-09 22:09:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/205beea3244e0319e4138418fc6ddf8005bb8187/SharpenEPI".
2025-10-09 22:09:23 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:32 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 9.041051s.
2025-10-09 22:09:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/205beea3244e0319e4138418fc6ddf8005bb8187/hmc_b0".
2025-10-09 22:09:33 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:10:05 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 31.272035s.
2025-10-09 22:10:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/pre_clip".
2025-10-09 22:10:05 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:10:06 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.7993s.
2025-10-09 22:10:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/31a2d952960bb394156b6f306bdb218d1a3780a3/SharpenEPI".
2025-10-09 22:10:07 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:16 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.468888s.
2025-10-09 22:10:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/31a2d952960bb394156b6f306bdb218d1a3780a3/hmc_b0".
2025-10-09 22:10:17 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:10:48 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 31.15288s.
2025-10-09 22:10:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/2b2d3c115460697810aa6e566fffc37666a9f484/post_n4".
2025-10-09 22:10:49 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:22 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 32.328905s.
2025-10-09 22:11:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/2b2d3c115460697810aa6e566fffc37666a9f484/smoothness".
2025-10-09 22:11:23 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:11:30 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 6.187896s.
2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/2b2d3c115460697810aa6e566fffc37666a9f484/PlotMosaicZoomed".
2025-10-09 22:11:31 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:11:37 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 6.119177s.
2025-10-09 22:11:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/2b2d3c115460697810aa6e566fffc37666a9f484/PlotBrainmask".
2025-10-09 22:11:39 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:11:44 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 4.6820509999999995s.
2025-10-09 22:11:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6f0946c97db40acfb80a38e1843efc01c11019a6/post_n4".
2025-10-09 22:11:45 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:17 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 31.89138s.
2025-10-09 22:12:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/6f0946c97db40acfb80a38e1843efc01c11019a6/smoothness".
2025-10-09 22:12:19 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:12:26 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 6.262887s.
2025-10-09 22:12:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6f0946c97db40acfb80a38e1843efc01c11019a6/PlotMosaicZoomed".
2025-10-09 22:12:27 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:12:33 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 5.842894s.
2025-10-09 22:12:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6f0946c97db40acfb80a38e1843efc01c11019a6/PlotBrainmask".
2025-10-09 22:12:35 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:12:40 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 4.553237s.
2025-10-09 22:12:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/pre_n4".
2025-10-09 22:12:41 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:50 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.424815s.
2025-10-09 22:12:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/pre_n4".
2025-10-09 22:12:51 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:00 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.25545s.
2025-10-09 22:13:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/pre_n4".
2025-10-09 22:13:01 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:09 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.151722s.
2025-10-09 22:13:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/pre_n4".
2025-10-09 22:13:11 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:19 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.101946s.
2025-10-09 22:13:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/pre_n4".
2025-10-09 22:13:21 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:30 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.232797s.
2025-10-09 22:13:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/pre_n4".
2025-10-09 22:13:31 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:39 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.092433s.
2025-10-09 22:13:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/205beea3244e0319e4138418fc6ddf8005bb8187/pre_n4".
2025-10-09 22:13:41 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:50 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.230144s.
2025-10-09 22:13:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/pre_n4".
2025-10-09 22:13:51 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.02609s.
2025-10-09 22:14:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/2b2d3c115460697810aa6e566fffc37666a9f484/final_masked".
2025-10-09 22:14:01 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:14:02 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.338585s.
2025-10-09 22:14:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/SpatialNormalization".
2025-10-09 22:14:03 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:14:04 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:15:21 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/SpatialNormalization/stderr.nipype-init).
2025-10-09 22:15:21 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:15:21 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:15:38 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:15:40 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:15:40 | INFO | niworkflows | Generating visual report
2025-10-09 22:15:59 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 115.248516s.
2025-10-09 22:15:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/2b2d3c115460697810aa6e566fffc37666a9f484/ds_report_zoomed".
2025-10-09 22:15:59 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:15:59 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.005164s.
2025-10-09 22:15:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/2b2d3c115460697810aa6e566fffc37666a9f484/ds_report_bmask".
2025-10-09 22:15:59 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:16:00 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004915s.
2025-10-09 22:16:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/6f0946c97db40acfb80a38e1843efc01c11019a6/final_masked".
2025-10-09 22:16:00 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:16:00 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.335621s.
2025-10-09 22:16:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6f0946c97db40acfb80a38e1843efc01c11019a6/SpatialNormalization".
2025-10-09 22:16:01 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:16:02 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:17:25 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:17:25 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6f0946c97db40acfb80a38e1843efc01c11019a6/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6f0946c97db40acfb80a38e1843efc01c11019a6/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6f0946c97db40acfb80a38e1843efc01c11019a6/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6f0946c97db40acfb80a38e1843efc01c11019a6/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6f0946c97db40acfb80a38e1843efc01c11019a6/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:17:42 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:17:44 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6f0946c97db40acfb80a38e1843efc01c11019a6/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/6f0946c97db40acfb80a38e1843efc01c11019a6/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:17:44 | INFO | niworkflows | Generating visual report
2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 121.292288s.
2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6f0946c97db40acfb80a38e1843efc01c11019a6/ds_report_zoomed".
2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.005105s.
2025-10-09 22:18:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6f0946c97db40acfb80a38e1843efc01c11019a6/ds_report_bmask".
2025-10-09 22:18:04 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:18:04 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004982s.
2025-10-09 22:18:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/synthstrip".
2025-10-09 22:18:04 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:18:54 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 50.638817s.
2025-10-09 22:18:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/synthstrip".
2025-10-09 22:18:55 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:19:46 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 50.998299s.
2025-10-09 22:19:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/synthstrip".
2025-10-09 22:19:47 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:20:39 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 51.48394s.
2025-10-09 22:20:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/synthstrip".
2025-10-09 22:20:40 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:21:32 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 52.378292s.
2025-10-09 22:21:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/synthstrip".
2025-10-09 22:21:34 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:22:25 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 51.808082s.
2025-10-09 22:22:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/synthstrip".
2025-10-09 22:22:26 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:23:17 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 51.899188s.
2025-10-09 22:23:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/205beea3244e0319e4138418fc6ddf8005bb8187/synthstrip".
2025-10-09 22:23:20 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:24:11 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 51.503715s.
2025-10-09 22:24:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/synthstrip".
2025-10-09 22:24:12 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:25:03 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 51.111372s.
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/2b2d3c115460697810aa6e566fffc37666a9f484/ds_report_norm".
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005008s.
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/6f0946c97db40acfb80a38e1843efc01c11019a6/ds_report_norm".
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004845s.
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/post_n4".
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:25:07 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.596877s.
2025-10-09 22:25:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/236bbb76ecc24fb647782bc60715b49a76dfe113/sp_mask".
2025-10-09 22:25:08 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:25:08 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.641466s.
2025-10-09 22:25:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/236bbb76ecc24fb647782bc60715b49a76dfe113/drift".
2025-10-09 22:25:10 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:25:10 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0002, 0.9977, 1.0022, 0.9986, 0.9996, 0.9909.
2025-10-09 22:25:11 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.676958s.
2025-10-09 22:25:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/236bbb76ecc24fb647782bc60715b49a76dfe113/EPI2MNI".
2025-10-09 22:25:12 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:25:12 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:25:46 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:25:46 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/236bbb76ecc24fb647782bc60715b49a76dfe113/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/236bbb76ecc24fb647782bc60715b49a76dfe113/SharpenEPI/sub-cIVs036_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/236bbb76ecc24fb647782bc60715b49a76dfe113/SharpenEPI/sub-cIVs036_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/236bbb76ecc24fb647782bc60715b49a76dfe113/SharpenEPI/sub-cIVs036_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:27:04 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:27:04 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/236bbb76ecc24fb647782bc60715b49a76dfe113/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:27:04 | INFO | niworkflows | Generating visual report
2025-10-09 22:27:24 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 131.84942s.
2025-10-09 22:27:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/post_n4".
2025-10-09 22:27:24 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:27:26 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.717478s.
2025-10-09 22:27:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/6475a5e25c8b09c74df8a7d29e521054060a4ef8/sp_mask".
2025-10-09 22:27:28 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:27:28 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.687499s.
2025-10-09 22:27:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/6475a5e25c8b09c74df8a7d29e521054060a4ef8/drift".
2025-10-09 22:27:30 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:27:30 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0007, 0.9988, 1.003, 1.0019, 0.9996, 0.9959.
2025-10-09 22:27:31 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.71871s.
2025-10-09 22:27:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6475a5e25c8b09c74df8a7d29e521054060a4ef8/EPI2MNI".
2025-10-09 22:27:32 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:27:32 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:28:07 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6475a5e25c8b09c74df8a7d29e521054060a4ef8/EPI2MNI/stderr.nipype-init).
2025-10-09 22:28:07 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:28:07 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6475a5e25c8b09c74df8a7d29e521054060a4ef8/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6475a5e25c8b09c74df8a7d29e521054060a4ef8/SharpenEPI/sub-cIVs036_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6475a5e25c8b09c74df8a7d29e521054060a4ef8/SharpenEPI/sub-cIVs036_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6475a5e25c8b09c74df8a7d29e521054060a4ef8/SharpenEPI/sub-cIVs036_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:29:25 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:29:25 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6475a5e25c8b09c74df8a7d29e521054060a4ef8/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:29:25 | INFO | niworkflows | Generating visual report
2025-10-09 22:29:45 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 133.218172s.
2025-10-09 22:29:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/post_n4".
2025-10-09 22:29:46 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:29:48 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.603397s.
2025-10-09 22:29:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/57a06f16a92d2ad1f4a562c26b46a8f706226115/sp_mask".
2025-10-09 22:29:50 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:29:51 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.924505s.
2025-10-09 22:29:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/57a06f16a92d2ad1f4a562c26b46a8f706226115/drift".
2025-10-09 22:29:52 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:29:52 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9969, 0.996, 1.0014, 0.9967, 0.9966, 0.9959, 0.9986, 0.9937.
2025-10-09 22:29:54 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.1356479999999998s.
2025-10-09 22:29:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/57a06f16a92d2ad1f4a562c26b46a8f706226115/EPI2MNI".
2025-10-09 22:29:56 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:29:56 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:30:29 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/57a06f16a92d2ad1f4a562c26b46a8f706226115/EPI2MNI/stderr.nipype-init).
2025-10-09 22:30:29 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:30:29 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/57a06f16a92d2ad1f4a562c26b46a8f706226115/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/57a06f16a92d2ad1f4a562c26b46a8f706226115/SharpenEPI/sub-cIVs036_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/57a06f16a92d2ad1f4a562c26b46a8f706226115/SharpenEPI/sub-cIVs036_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/57a06f16a92d2ad1f4a562c26b46a8f706226115/SharpenEPI/sub-cIVs036_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:31:43 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:31:43 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/57a06f16a92d2ad1f4a562c26b46a8f706226115/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:31:43 | INFO | niworkflows | Generating visual report
2025-10-09 22:32:02 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 125.71377s.
2025-10-09 22:32:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/post_n4".
2025-10-09 22:32:02 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:32:05 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.6060499999999998s.
2025-10-09 22:32:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/4345003aa6c08d224f3c4244755d10e0065d2e8a/sp_mask".
2025-10-09 22:32:06 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:32:07 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 1.01193s.
2025-10-09 22:32:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/4345003aa6c08d224f3c4244755d10e0065d2e8a/drift".
2025-10-09 22:32:08 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:32:08 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9782, 0.9979, 1.0003, 0.9954, 0.993, 0.9916, 0.9643, 0.9912.
2025-10-09 22:32:10 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.134866s.
2025-10-09 22:32:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4345003aa6c08d224f3c4244755d10e0065d2e8a/EPI2MNI".
2025-10-09 22:32:12 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:32:12 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:32:45 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:32:45 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4345003aa6c08d224f3c4244755d10e0065d2e8a/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4345003aa6c08d224f3c4244755d10e0065d2e8a/SharpenEPI/sub-cIVs036_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4345003aa6c08d224f3c4244755d10e0065d2e8a/SharpenEPI/sub-cIVs036_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4345003aa6c08d224f3c4244755d10e0065d2e8a/SharpenEPI/sub-cIVs036_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:33:59 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:33:59 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4345003aa6c08d224f3c4244755d10e0065d2e8a/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:33:59 | INFO | niworkflows | Generating visual report
2025-10-09 22:34:17 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 125.358058s.
2025-10-09 22:34:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/post_n4".
2025-10-09 22:34:18 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:34:21 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.660443s.
2025-10-09 22:34:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/sp_mask".
2025-10-09 22:34:22 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:34:23 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.67023s.
2025-10-09 22:34:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/drift".
2025-10-09 22:34:24 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:34:24 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0001, 0.9983, 1.0005, 0.996, 0.993, 0.9979.
2025-10-09 22:34:26 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.6553s.
2025-10-09 22:34:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/EPI2MNI".
2025-10-09 22:34:26 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:34:26 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:35:02 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/EPI2MNI/stderr.nipype-init).
2025-10-09 22:35:02 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:35:02 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/SharpenEPI/sub-cIVs036_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/SharpenEPI/sub-cIVs036_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/SharpenEPI/sub-cIVs036_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:36:16 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:36:16 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:36:16 | INFO | niworkflows | Generating visual report
2025-10-09 22:36:35 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 128.586316s.
2025-10-09 22:36:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/post_n4".
2025-10-09 22:36:36 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:36:39 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.7174110000000002s.
2025-10-09 22:36:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/sp_mask".
2025-10-09 22:36:40 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:36:41 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.643322s.
2025-10-09 22:36:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/drift".
2025-10-09 22:36:42 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:36:42 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9991, 0.9987, 0.9997, 0.9985, 0.9946, 0.9977.
2025-10-09 22:36:44 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.6570960000000001s.
2025-10-09 22:36:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/EPI2MNI".
2025-10-09 22:36:44 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:36:44 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:37:18 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/EPI2MNI/stderr.nipype-init).
2025-10-09 22:37:18 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:37:18 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/SharpenEPI/sub-cIVs036_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/SharpenEPI/sub-cIVs036_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/SharpenEPI/sub-cIVs036_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:38:33 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:38:33 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:38:33 | INFO | niworkflows | Generating visual report
2025-10-09 22:38:52 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 128.2898s.
2025-10-09 22:38:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/205beea3244e0319e4138418fc6ddf8005bb8187/post_n4".
2025-10-09 22:38:54 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:38:57 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.7285589999999997s.
2025-10-09 22:38:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/205beea3244e0319e4138418fc6ddf8005bb8187/sp_mask".
2025-10-09 22:38:58 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 1.005378s.
2025-10-09 22:39:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/205beea3244e0319e4138418fc6ddf8005bb8187/drift".
2025-10-09 22:39:00 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:39:00 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9994, 0.9959, 1.0001, 0.9962, 0.9926, 0.9922, 0.9918, 0.9984.
2025-10-09 22:39:02 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.162669s.
2025-10-09 22:39:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/205beea3244e0319e4138418fc6ddf8005bb8187/EPI2MNI".
2025-10-09 22:39:04 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:39:04 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:39:41 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/205beea3244e0319e4138418fc6ddf8005bb8187/EPI2MNI/stderr.nipype-init).
2025-10-09 22:39:41 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:39:41 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/205beea3244e0319e4138418fc6ddf8005bb8187/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/205beea3244e0319e4138418fc6ddf8005bb8187/SharpenEPI/sub-cIVs036_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/205beea3244e0319e4138418fc6ddf8005bb8187/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/205beea3244e0319e4138418fc6ddf8005bb8187/SharpenEPI/sub-cIVs036_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/205beea3244e0319e4138418fc6ddf8005bb8187/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/205beea3244e0319e4138418fc6ddf8005bb8187/SharpenEPI/sub-cIVs036_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/205beea3244e0319e4138418fc6ddf8005bb8187/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:40:55 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:40:55 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/205beea3244e0319e4138418fc6ddf8005bb8187/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:40:55 | INFO | niworkflows | Generating visual report
2025-10-09 22:41:14 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 130.074339s.
2025-10-09 22:41:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/post_n4".
2025-10-09 22:41:16 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:41:19 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.730196s.
2025-10-09 22:41:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/31a2d952960bb394156b6f306bdb218d1a3780a3/sp_mask".
2025-10-09 22:41:20 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:41:21 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.996861s.
2025-10-09 22:41:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/31a2d952960bb394156b6f306bdb218d1a3780a3/drift".
2025-10-09 22:41:22 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:41:22 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9969, 0.9967, 1.0022, 0.9956, 0.9945, 0.9879, 0.9924, 0.9998.
2025-10-09 22:41:24 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.152588s.
2025-10-09 22:41:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/31a2d952960bb394156b6f306bdb218d1a3780a3/EPI2MNI".
2025-10-09 22:41:26 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:41:26 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:42:00 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/31a2d952960bb394156b6f306bdb218d1a3780a3/EPI2MNI/stderr.nipype-init).
2025-10-09 22:42:00 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:42:00 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/31a2d952960bb394156b6f306bdb218d1a3780a3/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/31a2d952960bb394156b6f306bdb218d1a3780a3/SharpenEPI/sub-cIVs036_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/31a2d952960bb394156b6f306bdb218d1a3780a3/SharpenEPI/sub-cIVs036_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/31a2d952960bb394156b6f306bdb218d1a3780a3/SharpenEPI/sub-cIVs036_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:43:10 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:43:10 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/31a2d952960bb394156b6f306bdb218d1a3780a3/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:43:10 | INFO | niworkflows | Generating visual report
2025-10-09 22:43:29 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 122.997367s.
2025-10-09 22:43:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/final_masked".
2025-10-09 22:43:30 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:43:30 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.03757s.
2025-10-09 22:43:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/236bbb76ecc24fb647782bc60715b49a76dfe113/dwidenoise".
2025-10-09 22:43:32 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:43:56 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 23.511353s.
2025-10-09 22:43:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/236bbb76ecc24fb647782bc60715b49a76dfe113/ResampleSegmentation".
2025-10-09 22:43:56 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:44:00 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.036374s.
2025-10-09 22:44:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/final_masked".
2025-10-09 22:44:02 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:44:02 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.037768s.
2025-10-09 22:44:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/6475a5e25c8b09c74df8a7d29e521054060a4ef8/dwidenoise".
2025-10-09 22:44:04 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:44:27 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 23.133185s.
2025-10-09 22:44:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6475a5e25c8b09c74df8a7d29e521054060a4ef8/ResampleSegmentation".
2025-10-09 22:44:28 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:44:32 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.95976s.
2025-10-09 22:44:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/final_masked".
2025-10-09 22:44:34 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:44:34 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.037136s.
2025-10-09 22:44:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/57a06f16a92d2ad1f4a562c26b46a8f706226115/dwidenoise".
2025-10-09 22:44:36 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:45:18 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 41.271812s.
2025-10-09 22:45:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/57a06f16a92d2ad1f4a562c26b46a8f706226115/ResampleSegmentation".
2025-10-09 22:45:18 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:45:22 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.056818s.
2025-10-09 22:45:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/final_masked".
2025-10-09 22:45:24 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:45:24 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.035739s.
2025-10-09 22:45:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/4345003aa6c08d224f3c4244755d10e0065d2e8a/dwidenoise".
2025-10-09 22:45:26 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:46:07 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 40.799664s.
2025-10-09 22:46:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4345003aa6c08d224f3c4244755d10e0065d2e8a/ResampleSegmentation".
2025-10-09 22:46:08 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:46:13 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.2739s.
2025-10-09 22:46:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/final_masked".
2025-10-09 22:46:14 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:46:14 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.038422s.
2025-10-09 22:46:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/dwidenoise".
2025-10-09 22:46:16 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:46:39 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 22.800652s.
2025-10-09 22:46:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/ResampleSegmentation".
2025-10-09 22:46:40 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:46:44 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 4.058044s.
2025-10-09 22:46:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/final_masked".
2025-10-09 22:46:46 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:46:46 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.035301s.
2025-10-09 22:46:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/dwidenoise".
2025-10-09 22:46:48 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 22.686396s.
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/ResampleSegmentation".
2025-10-09 22:47:12 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:47:16 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.966004s.
2025-10-09 22:47:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/205beea3244e0319e4138418fc6ddf8005bb8187/final_masked".
2025-10-09 22:47:18 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:47:18 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.037633s.
2025-10-09 22:47:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/205beea3244e0319e4138418fc6ddf8005bb8187/dwidenoise".
2025-10-09 22:47:20 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:48:00 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 39.881021s.
2025-10-09 22:48:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/205beea3244e0319e4138418fc6ddf8005bb8187/ResampleSegmentation".
2025-10-09 22:48:02 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:48:06 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.996486s.
2025-10-09 22:48:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/final_masked".
2025-10-09 22:48:08 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:48:08 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.035044s.
2025-10-09 22:48:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/31a2d952960bb394156b6f306bdb218d1a3780a3/dwidenoise".
2025-10-09 22:48:10 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:48:50 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 39.484434s.
2025-10-09 22:48:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/31a2d952960bb394156b6f306bdb218d1a3780a3/ResampleSegmentation".
2025-10-09 22:48:50 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:48:54 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.888404s.
2025-10-09 22:48:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/236bbb76ecc24fb647782bc60715b49a76dfe113/dwimodel".
2025-10-09 22:48:56 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:49:00 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.92724s.
2025-10-09 22:49:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/236bbb76ecc24fb647782bc60715b49a76dfe113/estimate_sigma".
2025-10-09 22:49:02 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:02 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038507s.
2025-10-09 22:49:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/get_wm".
2025-10-09 22:49:04 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:04 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.038566s.
2025-10-09 22:49:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/6475a5e25c8b09c74df8a7d29e521054060a4ef8/dwimodel".
2025-10-09 22:49:06 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:49:10 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.905665s.
2025-10-09 22:49:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/6475a5e25c8b09c74df8a7d29e521054060a4ef8/estimate_sigma".
2025-10-09 22:49:12 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:12 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038029s.
2025-10-09 22:49:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/get_wm".
2025-10-09 22:49:14 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:14 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.036274s.
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/57a06f16a92d2ad1f4a562c26b46a8f706226115/dwimodel".
2025-10-09 22:49:16 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:49:21 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.496064s.
2025-10-09 22:49:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/57a06f16a92d2ad1f4a562c26b46a8f706226115/estimate_sigma".
2025-10-09 22:49:22 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:22 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038856s.
2025-10-09 22:49:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/get_wm".
2025-10-09 22:49:24 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:24 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.036357s.
2025-10-09 22:49:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/4345003aa6c08d224f3c4244755d10e0065d2e8a/dwimodel".
2025-10-09 22:49:26 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:49:31 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.334047s.
2025-10-09 22:49:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/4345003aa6c08d224f3c4244755d10e0065d2e8a/estimate_sigma".
2025-10-09 22:49:32 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:32 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038156s.
2025-10-09 22:49:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/get_wm".
2025-10-09 22:49:34 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:34 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.037194s.
2025-10-09 22:49:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/dwimodel".
2025-10-09 22:49:36 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:49:40 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.945715s.
2025-10-09 22:49:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/estimate_sigma".
2025-10-09 22:49:42 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:42 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.038083s.
2025-10-09 22:49:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/get_wm".
2025-10-09 22:49:44 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:44 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.036297s.
2025-10-09 22:49:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/dwimodel".
2025-10-09 22:49:46 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:49:50 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.889117s.
2025-10-09 22:49:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/estimate_sigma".
2025-10-09 22:49:52 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:52 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.047213s.
2025-10-09 22:49:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/get_wm".
2025-10-09 22:49:54 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:49:54 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035086s.
2025-10-09 22:49:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/205beea3244e0319e4138418fc6ddf8005bb8187/dwimodel".
2025-10-09 22:49:56 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:50:01 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.301048s.
2025-10-09 22:50:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/205beea3244e0319e4138418fc6ddf8005bb8187/estimate_sigma".
2025-10-09 22:50:02 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:02 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.037321s.
2025-10-09 22:50:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/205beea3244e0319e4138418fc6ddf8005bb8187/get_wm".
2025-10-09 22:50:04 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:04 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034649s.
2025-10-09 22:50:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/31a2d952960bb394156b6f306bdb218d1a3780a3/dwimodel".
2025-10-09 22:50:06 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:50:11 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.362272s.
2025-10-09 22:50:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/31a2d952960bb394156b6f306bdb218d1a3780a3/estimate_sigma".
2025-10-09 22:50:12 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:12 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.037418s.
2025-10-09 22:50:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/get_wm".
2025-10-09 22:50:14 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:14 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035027s.
2025-10-09 22:50:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/236bbb76ecc24fb647782bc60715b49a76dfe113/cc_mask".
2025-10-09 22:50:16 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:50:17 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.527335s.
2025-10-09 22:50:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/mosaic_fa".
2025-10-09 22:50:18 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:20 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.297693s.
2025-10-09 22:50:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/mosaic_md".
2025-10-09 22:50:20 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:22 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.4311340000000001s.
2025-10-09 22:50:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/plot_heatmap".
2025-10-09 22:50:22 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:50:24 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.49959s.
2025-10-09 22:50:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/6475a5e25c8b09c74df8a7d29e521054060a4ef8/cc_mask".
2025-10-09 22:50:24 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:50:25 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.527521s.
2025-10-09 22:50:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/mosaic_fa".
2025-10-09 22:50:26 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:28 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.34979s.
2025-10-09 22:50:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/mosaic_md".
2025-10-09 22:50:28 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:30 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.642783s.
2025-10-09 22:50:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/plot_heatmap".
2025-10-09 22:50:30 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:50:32 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.152069s.
2025-10-09 22:50:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/57a06f16a92d2ad1f4a562c26b46a8f706226115/cc_mask".
2025-10-09 22:50:32 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.510155s.
2025-10-09 22:50:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/mosaic_fa".
2025-10-09 22:50:34 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:36 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.514105s.
2025-10-09 22:50:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/mosaic_md".
2025-10-09 22:50:36 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:38 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.432857s.
2025-10-09 22:50:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/plot_heatmap".
2025-10-09 22:50:38 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:50:40 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.478715s.
2025-10-09 22:50:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/4345003aa6c08d224f3c4244755d10e0065d2e8a/cc_mask".
2025-10-09 22:50:40 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:50:41 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.510606s.
2025-10-09 22:50:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/mosaic_fa".
2025-10-09 22:50:42 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:44 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.335974s.
2025-10-09 22:50:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/mosaic_md".
2025-10-09 22:50:44 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:46 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.613762s.
2025-10-09 22:50:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/plot_heatmap".
2025-10-09 22:50:46 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:50:48 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.23404s.
2025-10-09 22:50:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/cc_mask".
2025-10-09 22:50:48 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:50:49 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.524737s.
2025-10-09 22:50:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/mosaic_fa".
2025-10-09 22:50:50 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:52 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.524857s.
2025-10-09 22:50:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/mosaic_md".
2025-10-09 22:50:52 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:54 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.68763s.
2025-10-09 22:50:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/plot_heatmap".
2025-10-09 22:50:54 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:50:56 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.13653s.
2025-10-09 22:50:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/cc_mask".
2025-10-09 22:50:56 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:50:57 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.518401s.
2025-10-09 22:50:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/mosaic_fa".
2025-10-09 22:50:58 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:00 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.484704s.
2025-10-09 22:51:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/mosaic_md".
2025-10-09 22:51:00 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:02 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.438363s.
2025-10-09 22:51:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/plot_heatmap".
2025-10-09 22:51:02 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:04 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.353484s.
2025-10-09 22:51:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/205beea3244e0319e4138418fc6ddf8005bb8187/cc_mask".
2025-10-09 22:51:04 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:51:05 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.495719s.
2025-10-09 22:51:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/205beea3244e0319e4138418fc6ddf8005bb8187/mosaic_fa".
2025-10-09 22:51:06 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:08 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.286289s.
2025-10-09 22:51:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/205beea3244e0319e4138418fc6ddf8005bb8187/mosaic_md".
2025-10-09 22:51:08 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:10 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.544621s.
2025-10-09 22:51:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/205beea3244e0319e4138418fc6ddf8005bb8187/plot_heatmap".
2025-10-09 22:51:10 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:12 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.194508s.
2025-10-09 22:51:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/31a2d952960bb394156b6f306bdb218d1a3780a3/cc_mask".
2025-10-09 22:51:12 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:51:13 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.520057s.
2025-10-09 22:51:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/mosaic_fa".
2025-10-09 22:51:14 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:16 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.462745s.
2025-10-09 22:51:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/mosaic_md".
2025-10-09 22:51:16 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:18 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.403589s.
2025-10-09 22:51:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/plot_heatmap".
2025-10-09 22:51:18 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:20 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.176667s.
2025-10-09 22:51:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/ds_report_fa".
2025-10-09 22:51:20 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:20 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.00493s.
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/ds_report_md".
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.00459s.
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/236bbb76ecc24fb647782bc60715b49a76dfe113/ds_report_hm".
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004725s.
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/ds_report_fa".
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.007355s.
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/ds_report_md".
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004679s.
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6475a5e25c8b09c74df8a7d29e521054060a4ef8/ds_report_hm".
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004693s.
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/ds_report_fa".
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004705s.
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/ds_report_md".
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004628s.
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/57a06f16a92d2ad1f4a562c26b46a8f706226115/ds_report_hm".
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004632s.
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/ds_report_fa".
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:21 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004585s.
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/ds_report_md".
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004545s.
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4345003aa6c08d224f3c4244755d10e0065d2e8a/ds_report_hm".
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.00454s.
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/ds_report_fa".
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004799s.
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/ds_report_md".
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004556s.
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b4af7cd4cb038f0d1b4e0b167f1cdb8a7034e786/ds_report_hm".
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004551s.
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/ds_report_fa".
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004577s.
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/ds_report_md".
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004583s.
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/fd8852ce99dec6238f0f15d3fdec7ab4bd047801/ds_report_hm".
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004696s.
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/205beea3244e0319e4138418fc6ddf8005bb8187/ds_report_fa".
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004591s.
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/205beea3244e0319e4138418fc6ddf8005bb8187/ds_report_md".
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004604s.
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/205beea3244e0319e4138418fc6ddf8005bb8187/ds_report_hm".
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.00456s.
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/ds_report_fa".
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004619s.
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/ds_report_md".
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004578s.
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/31a2d952960bb394156b6f306bdb218d1a3780a3/ds_report_hm".
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.00466s.
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:51:23 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:51:32 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 9.225764999999999s.
2025-10-09 22:51:33 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:51:33 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:51:43 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 9.170377s.
2025-10-09 22:51:43 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:51:43 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:51:53 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 9.138495s.
2025-10-09 22:51:53 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:51:53 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:51:53 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:51:53 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:51:53 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:51:53 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:51:53 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/2b2d3c115460697810aa6e566fffc37666a9f484/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:51:53 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:51:53 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:51:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/2b2d3c115460697810aa6e566fffc37666a9f484/Enhance".
2025-10-09 22:51:55 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:51:56 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.580476s.
2025-10-09 22:51:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/2b2d3c115460697810aa6e566fffc37666a9f484/format_tpm_names".
2025-10-09 22:51:57 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:51:59 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.891473s.
2025-10-09 22:52:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/2b2d3c115460697810aa6e566fffc37666a9f484/Grad".
2025-10-09 22:52:01 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:08 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 6.291262s.
2025-10-09 22:52:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/2b2d3c115460697810aa6e566fffc37666a9f484/apply_mask".
2025-10-09 22:52:09 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:52:10 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.299758s.
2025-10-09 22:52:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/2b2d3c115460697810aa6e566fffc37666a9f484/GradientThreshold".
2025-10-09 22:52:11 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:25 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 13.256857s.
2025-10-09 22:52:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/2b2d3c115460697810aa6e566fffc37666a9f484/segmentation".
2025-10-09 22:52:25 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:54:02 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 96.801503s.
2025-10-09 22:54:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/2b2d3c115460697810aa6e566fffc37666a9f484/ArtifactMask".
2025-10-09 22:54:03 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:54:10 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 6.12133s.
2025-10-09 22:54:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/2b2d3c115460697810aa6e566fffc37666a9f484/PlotHeadmask".
2025-10-09 22:54:11 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:54:14 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 2.9116210000000002s.
2025-10-09 22:54:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/2b2d3c115460697810aa6e566fffc37666a9f484/harmonize".
2025-10-09 22:54:15 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:54:16 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 1.012829s.
2025-10-09 22:54:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/2b2d3c115460697810aa6e566fffc37666a9f484/PlotSegmentation".
2025-10-09 22:54:17 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:54:21 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 3.330897s.
2025-10-09 22:54:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/2b2d3c115460697810aa6e566fffc37666a9f484/provenance".
2025-10-09 22:54:21 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:54:22 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.058199s.
2025-10-09 22:54:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/2b2d3c115460697810aa6e566fffc37666a9f484/ComputeQI2".
2025-10-09 22:54:22 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:54:22 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.217625s.
2025-10-09 22:54:22 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:54:22 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/2b2d3c115460697810aa6e566fffc37666a9f484/ComputeQI2)
2025-10-09 22:54:22 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=239) crashed: /var/lib/condor/execute/dir_3950016/ds/logs/crash-20251009-225422-fhoffstaedter-ComputeQI2.a0-1a69291a-3d8e-46be-a3b4-b449329ef9f1.txt
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx1/anat/sub-cIVs036_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx1/dwi/sub-cIVs036_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx1/dwi/sub-cIVs036_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx1/dwi/sub-cIVs036_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx1/dwi/sub-cIVs036_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx1/dwi/sub-cIVs036_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx1/dwi/sub-cIVs036_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx2/anat/sub-cIVs036_ses-s1Bx2_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx2/dwi/sub-cIVs036_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx2/dwi/sub-cIVs036_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx2/dwi/sub-cIVs036_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx2/dwi/sub-cIVs036_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx2/dwi/sub-cIVs036_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036/ses-s1Bx2/dwi/sub-cIVs036_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-214_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs036 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_3950016/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 16)
run (error: 1)
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