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ds003416-mriqc/logs/sub-cIVs034_10066441.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

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install(ok): /var/lib/condor/execute/dir_470406/ds (dataset)
install(ok): /var/lib/condor/execute/dir_470406/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_470406/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_470406/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:56:53 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-10-09 21:56:53 | IMPORTANT | mriqc | File size ('t1w'): 0.00|0.00 GB [maximum|average].
2025-10-09 21:56:53 | IMPORTANT | mriqc | Extracting metadata and entities for 6 input runs of modality 'dwi'...
2025-10-09 21:56:53 | WARNING | nipype.workflow | 2 cannot be processed (too short or too long)
2025-10-09 21:56:53 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:56:53 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215651_dbc397b1-07fa-425a-b6fa-378a93908403.toml.
2025-10-09 21:56:58 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:56:59 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:56:59 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 4 NIfTI files..
2025-10-09 21:57:00 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-10-09 21:57:04 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:57:09 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:57:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/conform".
2025-10-09 21:57:09 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:57:09 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.248038s.
2025-10-09 21:57:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/35f55bd6d2558681e18405c99e7c55447677be5d/load_bmat".
2025-10-09 21:57:11 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:11 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.175655s.
2025-10-09 21:57:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/35f55bd6d2558681e18405c99e7c55447677be5d/sanitize".
2025-10-09 21:57:13 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:14 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.742357s.
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/35f55bd6d2558681e18405c99e7c55447677be5d/provenance".
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.016771s.
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/cb8a556f24150a5846460b790b640daa5a0a0381/load_bmat".
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.022646s.
2025-10-09 21:57:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/cb8a556f24150a5846460b790b640daa5a0a0381/sanitize".
2025-10-09 21:57:17 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:18 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.765299s.
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/cb8a556f24150a5846460b790b640daa5a0a0381/provenance".
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.016363s.
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/load_bmat".
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023766s.
2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/sanitize".
2025-10-09 21:57:21 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:22 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.963027s.
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/provenance".
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.021153s.
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/1d716c00daeb0843d2fae808858e40a70c082f74/load_bmat".
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.022993s.
2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/1d716c00daeb0843d2fae808858e40a70c082f74/sanitize".
2025-10-09 21:57:25 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:26 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.997446s.
2025-10-09 21:57:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/1d716c00daeb0843d2fae808858e40a70c082f74/provenance".
2025-10-09 21:57:27 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:27 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.021004s.
2025-10-09 21:57:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/pre_clip".
2025-10-09 21:57:27 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:57:36 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 8.6719s.
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/RotationMask".
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:57:38 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.69903s.
2025-10-09 21:57:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/PlotMosaicNoise".
2025-10-09 21:57:39 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:57:44 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.086299s.
2025-10-09 21:57:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/35f55bd6d2558681e18405c99e7c55447677be5d/shells".
2025-10-09 21:57:45 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:45 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000735s.
2025-10-09 21:57:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/35f55bd6d2558681e18405c99e7c55447677be5d/piesno".
2025-10-09 21:57:47 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:48 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.960272s.
2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/cb8a556f24150a5846460b790b640daa5a0a0381/shells".
2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000683s.
2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/cb8a556f24150a5846460b790b640daa5a0a0381/piesno".
2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:52 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.939978s.
2025-10-09 21:57:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/shells".
2025-10-09 21:57:53 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:53 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000727s.
2025-10-09 21:57:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/piesno".
2025-10-09 21:57:55 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:57:56 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.25114s.
2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/1d716c00daeb0843d2fae808858e40a70c082f74/shells".
2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000696s.
2025-10-09 21:57:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/1d716c00daeb0843d2fae808858e40a70c082f74/piesno".
2025-10-09 21:57:59 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:00 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.242779s.
2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/pre_n4".
2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:00:13 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 131.910608s.
2025-10-09 22:00:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/ds_report_background".
2025-10-09 22:00:15 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:00:15 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.009225s.
2025-10-09 22:00:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/35f55bd6d2558681e18405c99e7c55447677be5d/dwi_ref".
2025-10-09 22:00:15 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:16 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.83345s.
2025-10-09 22:00:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/35f55bd6d2558681e18405c99e7c55447677be5d/get_lowb".
2025-10-09 22:00:17 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:18 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.52821s.
2025-10-09 22:00:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/cb8a556f24150a5846460b790b640daa5a0a0381/dwi_ref".
2025-10-09 22:00:19 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:19 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.512813s.
2025-10-09 22:00:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/cb8a556f24150a5846460b790b640daa5a0a0381/get_lowb".
2025-10-09 22:00:21 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:22 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.568302s.
2025-10-09 22:00:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/dwi_ref".
2025-10-09 22:00:23 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:24 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.629552s.
2025-10-09 22:00:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/get_lowb".
2025-10-09 22:00:25 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:25 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.39105s.
2025-10-09 22:00:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/1d716c00daeb0843d2fae808858e40a70c082f74/dwi_ref".
2025-10-09 22:00:27 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:28 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.613692s.
2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/1d716c00daeb0843d2fae808858e40a70c082f74/get_lowb".
2025-10-09 22:00:29 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:30 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.537238s.
2025-10-09 22:00:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/synthstrip".
2025-10-09 22:00:31 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:02:11 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 100.298942s.
2025-10-09 22:02:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/35f55bd6d2558681e18405c99e7c55447677be5d/pre_clip".
2025-10-09 22:02:13 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:02:14 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.582868s.
2025-10-09 22:02:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/35f55bd6d2558681e18405c99e7c55447677be5d/SharpenEPI".
2025-10-09 22:02:15 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:02:23 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.053605s.
2025-10-09 22:02:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/35f55bd6d2558681e18405c99e7c55447677be5d/hmc_b0".
2025-10-09 22:02:25 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:02:48 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 23.090532s.
2025-10-09 22:02:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cb8a556f24150a5846460b790b640daa5a0a0381/pre_clip".
2025-10-09 22:02:49 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:02:50 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.619259s.
2025-10-09 22:02:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cb8a556f24150a5846460b790b640daa5a0a0381/SharpenEPI".
2025-10-09 22:02:51 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:02:59 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.085605s.
2025-10-09 22:03:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/cb8a556f24150a5846460b790b640daa5a0a0381/hmc_b0".
2025-10-09 22:03:01 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:03:24 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 23.004701s.
2025-10-09 22:03:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/pre_clip".
2025-10-09 22:03:25 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:03:26 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.639041s.
2025-10-09 22:03:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/SharpenEPI".
2025-10-09 22:03:27 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:03:35 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.959298s.
2025-10-09 22:03:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/hmc_b0".
2025-10-09 22:03:37 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:04:05 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 27.98107s.
2025-10-09 22:04:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1d716c00daeb0843d2fae808858e40a70c082f74/pre_clip".
2025-10-09 22:04:07 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:04:08 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.616893s.
2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1d716c00daeb0843d2fae808858e40a70c082f74/SharpenEPI".
2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:04:17 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.062219s.
2025-10-09 22:04:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/1d716c00daeb0843d2fae808858e40a70c082f74/hmc_b0".
2025-10-09 22:04:19 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:04:47 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 28.05732s.
2025-10-09 22:04:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/post_n4".
2025-10-09 22:04:49 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:13 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 23.908607s.
2025-10-09 22:05:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/smoothness".
2025-10-09 22:05:15 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:05:19 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 4.3024000000000004s.
2025-10-09 22:05:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/PlotMosaicZoomed".
2025-10-09 22:05:21 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:05:27 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 5.565793s.
2025-10-09 22:05:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/PlotBrainmask".
2025-10-09 22:05:27 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:05:31 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 4.004134s.
2025-10-09 22:05:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/35f55bd6d2558681e18405c99e7c55447677be5d/pre_n4".
2025-10-09 22:05:33 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:41 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.089965s.
2025-10-09 22:05:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cb8a556f24150a5846460b790b640daa5a0a0381/pre_n4".
2025-10-09 22:05:43 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:51 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.121532s.
2025-10-09 22:05:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/pre_n4".
2025-10-09 22:05:53 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:01 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.039404s.
2025-10-09 22:06:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1d716c00daeb0843d2fae808858e40a70c082f74/pre_n4".
2025-10-09 22:06:03 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:11 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.109898s.
2025-10-09 22:06:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/final_masked".
2025-10-09 22:06:13 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:06:13 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.296317s.
2025-10-09 22:06:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/SpatialNormalization".
2025-10-09 22:06:15 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:06:16 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:07:38 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/SpatialNormalization/stderr.nipype-init).
2025-10-09 22:07:38 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:07:38 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:07:56 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:07:58 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:07:58 | INFO | niworkflows | Generating visual report
2025-10-09 22:08:18 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 123.33326s.
2025-10-09 22:08:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/ds_report_zoomed".
2025-10-09 22:08:19 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:08:19 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.005341s.
2025-10-09 22:08:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/ds_report_bmask".
2025-10-09 22:08:19 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:08:19 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.005242s.
2025-10-09 22:08:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/35f55bd6d2558681e18405c99e7c55447677be5d/synthstrip".
2025-10-09 22:08:19 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:09:12 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 52.319778s.
2025-10-09 22:09:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cb8a556f24150a5846460b790b640daa5a0a0381/synthstrip".
2025-10-09 22:09:13 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:10:08 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 54.469733s.
2025-10-09 22:10:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/synthstrip".
2025-10-09 22:10:09 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:11:05 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 55.769322s.
2025-10-09 22:11:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1d716c00daeb0843d2fae808858e40a70c082f74/synthstrip".
2025-10-09 22:11:05 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:12:00 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 54.730208s.
2025-10-09 22:12:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/ds_report_norm".
2025-10-09 22:12:01 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:12:01 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.012034s.
2025-10-09 22:12:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/35f55bd6d2558681e18405c99e7c55447677be5d/post_n4".
2025-10-09 22:12:02 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:04 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.282899s.
2025-10-09 22:12:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/35f55bd6d2558681e18405c99e7c55447677be5d/sp_mask".
2025-10-09 22:12:05 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:12:06 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.649181s.
2025-10-09 22:12:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/35f55bd6d2558681e18405c99e7c55447677be5d/drift".
2025-10-09 22:12:07 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:12:08 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0159, 1.016, 1.0237, 1.0198, 1.0198, 1.0174.
2025-10-09 22:12:09 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.642183s.
2025-10-09 22:12:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/35f55bd6d2558681e18405c99e7c55447677be5d/EPI2MNI".
2025-10-09 22:12:09 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:12:09 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:12:48 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:12:48 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/35f55bd6d2558681e18405c99e7c55447677be5d/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/35f55bd6d2558681e18405c99e7c55447677be5d/SharpenEPI/sub-cIVs034_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-115_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/35f55bd6d2558681e18405c99e7c55447677be5d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/35f55bd6d2558681e18405c99e7c55447677be5d/SharpenEPI/sub-cIVs034_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-115_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/35f55bd6d2558681e18405c99e7c55447677be5d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/35f55bd6d2558681e18405c99e7c55447677be5d/SharpenEPI/sub-cIVs034_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-115_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/35f55bd6d2558681e18405c99e7c55447677be5d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:14:07 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:14:07 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/35f55bd6d2558681e18405c99e7c55447677be5d/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:14:07 | INFO | niworkflows | Generating visual report
2025-10-09 22:14:26 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 136.027138s.
2025-10-09 22:14:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cb8a556f24150a5846460b790b640daa5a0a0381/post_n4".
2025-10-09 22:14:27 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:14:30 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.207894s.
2025-10-09 22:14:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/cb8a556f24150a5846460b790b640daa5a0a0381/sp_mask".
2025-10-09 22:14:31 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:14:32 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.596018s.
2025-10-09 22:14:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/cb8a556f24150a5846460b790b640daa5a0a0381/drift".
2025-10-09 22:14:33 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:14:34 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9989, 0.9768, 1.0032, 0.9953, 0.9981, 0.9647.
2025-10-09 22:14:35 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.5609899999999999s.
2025-10-09 22:14:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cb8a556f24150a5846460b790b640daa5a0a0381/EPI2MNI".
2025-10-09 22:14:35 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:14:35 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:15:13 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:15:13 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cb8a556f24150a5846460b790b640daa5a0a0381/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cb8a556f24150a5846460b790b640daa5a0a0381/SharpenEPI/sub-cIVs034_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-218_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cb8a556f24150a5846460b790b640daa5a0a0381/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cb8a556f24150a5846460b790b640daa5a0a0381/SharpenEPI/sub-cIVs034_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-218_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cb8a556f24150a5846460b790b640daa5a0a0381/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cb8a556f24150a5846460b790b640daa5a0a0381/SharpenEPI/sub-cIVs034_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-218_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cb8a556f24150a5846460b790b640daa5a0a0381/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:16:30 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:16:30 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cb8a556f24150a5846460b790b640daa5a0a0381/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:16:30 | INFO | niworkflows | Generating visual report
2025-10-09 22:16:50 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 134.070281s.
2025-10-09 22:16:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/post_n4".
2025-10-09 22:16:52 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:16:54 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.271727s.
2025-10-09 22:16:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/sp_mask".
2025-10-09 22:16:56 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:16:56 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.768667s.
2025-10-09 22:16:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/drift".
2025-10-09 22:16:58 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:16:58 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9981, 0.9946, 1.0009, 0.9998, 0.9996, 0.997, 1.0022, 0.9974.
2025-10-09 22:17:00 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.965698s.
2025-10-09 22:17:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/EPI2MNI".
2025-10-09 22:17:02 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:17:02 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:17:40 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:17:40 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/SharpenEPI/sub-cIVs034_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/SharpenEPI/sub-cIVs034_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/SharpenEPI/sub-cIVs034_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:18:58 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:18:58 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:18:58 | INFO | niworkflows | Generating visual report
2025-10-09 22:19:18 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 136.484467s.
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1d716c00daeb0843d2fae808858e40a70c082f74/post_n4".
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:19:22 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.398988s.
2025-10-09 22:19:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/1d716c00daeb0843d2fae808858e40a70c082f74/sp_mask".
2025-10-09 22:19:24 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:19:24 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.773183s.
2025-10-09 22:19:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/1d716c00daeb0843d2fae808858e40a70c082f74/drift".
2025-10-09 22:19:26 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:19:26 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 1.0007, 0.9952, 1.0023, 1.0008, 0.998, 0.9904, 0.997, 0.9946.
2025-10-09 22:19:28 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.070811s.
2025-10-09 22:19:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1d716c00daeb0843d2fae808858e40a70c082f74/EPI2MNI".
2025-10-09 22:19:30 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:19:30 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:20:08 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1d716c00daeb0843d2fae808858e40a70c082f74/EPI2MNI/stderr.nipype-init).
2025-10-09 22:20:08 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:20:08 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1d716c00daeb0843d2fae808858e40a70c082f74/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1d716c00daeb0843d2fae808858e40a70c082f74/SharpenEPI/sub-cIVs034_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1d716c00daeb0843d2fae808858e40a70c082f74/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1d716c00daeb0843d2fae808858e40a70c082f74/SharpenEPI/sub-cIVs034_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1d716c00daeb0843d2fae808858e40a70c082f74/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1d716c00daeb0843d2fae808858e40a70c082f74/SharpenEPI/sub-cIVs034_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1d716c00daeb0843d2fae808858e40a70c082f74/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:21:28 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:21:28 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1d716c00daeb0843d2fae808858e40a70c082f74/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:21:28 | INFO | niworkflows | Generating visual report
2025-10-09 22:21:48 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 138.450454s.
2025-10-09 22:21:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/35f55bd6d2558681e18405c99e7c55447677be5d/final_masked".
2025-10-09 22:21:50 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:21:50 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.034885s.
2025-10-09 22:21:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/35f55bd6d2558681e18405c99e7c55447677be5d/dwidenoise".
2025-10-09 22:21:52 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:22:10 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 18.385458s.
2025-10-09 22:22:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/35f55bd6d2558681e18405c99e7c55447677be5d/ResampleSegmentation".
2025-10-09 22:22:12 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:22:15 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.697206s.
2025-10-09 22:22:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/cb8a556f24150a5846460b790b640daa5a0a0381/final_masked".
2025-10-09 22:22:16 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:22:16 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.034959s.
2025-10-09 22:22:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/cb8a556f24150a5846460b790b640daa5a0a0381/dwidenoise".
2025-10-09 22:22:18 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:22:36 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 17.817944s.
2025-10-09 22:22:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/cb8a556f24150a5846460b790b640daa5a0a0381/ResampleSegmentation".
2025-10-09 22:22:36 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:22:39 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.371534s.
2025-10-09 22:22:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/final_masked".
2025-10-09 22:22:40 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:22:40 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.034774s.
2025-10-09 22:22:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/dwidenoise".
2025-10-09 22:22:42 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:23:15 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 33.034189s.
2025-10-09 22:23:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/ResampleSegmentation".
2025-10-09 22:23:16 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:23:19 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.354979s.
2025-10-09 22:23:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1d716c00daeb0843d2fae808858e40a70c082f74/final_masked".
2025-10-09 22:23:20 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:23:20 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.034565s.
2025-10-09 22:23:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/1d716c00daeb0843d2fae808858e40a70c082f74/dwidenoise".
2025-10-09 22:23:22 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:23:55 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 33.076357s.
2025-10-09 22:23:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1d716c00daeb0843d2fae808858e40a70c082f74/ResampleSegmentation".
2025-10-09 22:23:56 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:23:59 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.4050380000000002s.
2025-10-09 22:24:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/35f55bd6d2558681e18405c99e7c55447677be5d/dwimodel".
2025-10-09 22:24:00 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:24:03 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.477836s.
2025-10-09 22:24:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/35f55bd6d2558681e18405c99e7c55447677be5d/estimate_sigma".
2025-10-09 22:24:04 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:04 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.041362s.
2025-10-09 22:24:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/35f55bd6d2558681e18405c99e7c55447677be5d/get_wm".
2025-10-09 22:24:06 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:06 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.043503s.
2025-10-09 22:24:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/cb8a556f24150a5846460b790b640daa5a0a0381/dwimodel".
2025-10-09 22:24:08 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:24:11 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.3922309999999998s.
2025-10-09 22:24:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/cb8a556f24150a5846460b790b640daa5a0a0381/estimate_sigma".
2025-10-09 22:24:12 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:12 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.040881s.
2025-10-09 22:24:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cb8a556f24150a5846460b790b640daa5a0a0381/get_wm".
2025-10-09 22:24:14 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:14 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.043186s.
2025-10-09 22:24:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/dwimodel".
2025-10-09 22:24:16 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:24:20 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.981923s.
2025-10-09 22:24:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/estimate_sigma".
2025-10-09 22:24:22 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:22 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.04264s.
2025-10-09 22:24:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/get_wm".
2025-10-09 22:24:24 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:24 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.043041s.
2025-10-09 22:24:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/1d716c00daeb0843d2fae808858e40a70c082f74/dwimodel".
2025-10-09 22:24:26 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:24:30 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.863044s.
2025-10-09 22:24:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/1d716c00daeb0843d2fae808858e40a70c082f74/estimate_sigma".
2025-10-09 22:24:32 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:32 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.043092s.
2025-10-09 22:24:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1d716c00daeb0843d2fae808858e40a70c082f74/get_wm".
2025-10-09 22:24:34 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:24:34 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.043345s.
2025-10-09 22:24:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/35f55bd6d2558681e18405c99e7c55447677be5d/cc_mask".
2025-10-09 22:24:36 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:24:36 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.627228s.
2025-10-09 22:24:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/35f55bd6d2558681e18405c99e7c55447677be5d/mosaic_fa".
2025-10-09 22:24:38 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:24:39 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.6315490000000001s.
2025-10-09 22:24:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/35f55bd6d2558681e18405c99e7c55447677be5d/mosaic_md".
2025-10-09 22:24:40 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:24:42 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 2.004463s.
2025-10-09 22:24:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/35f55bd6d2558681e18405c99e7c55447677be5d/plot_heatmap".
2025-10-09 22:24:44 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:24:45 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.310961s.
2025-10-09 22:24:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/cb8a556f24150a5846460b790b640daa5a0a0381/cc_mask".
2025-10-09 22:24:46 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:24:46 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.594391s.
2025-10-09 22:24:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cb8a556f24150a5846460b790b640daa5a0a0381/mosaic_fa".
2025-10-09 22:24:48 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:24:50 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.905684s.
2025-10-09 22:24:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cb8a556f24150a5846460b790b640daa5a0a0381/mosaic_md".
2025-10-09 22:24:52 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:24:54 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.993808s.
2025-10-09 22:24:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cb8a556f24150a5846460b790b640daa5a0a0381/plot_heatmap".
2025-10-09 22:24:56 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:24:57 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.294462s.
2025-10-09 22:24:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/cc_mask".
2025-10-09 22:24:58 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:24:58 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.618369s.
2025-10-09 22:25:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/mosaic_fa".
2025-10-09 22:25:00 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:25:02 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 2.027103s.
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/mosaic_md".
2025-10-09 22:25:04 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:25:06 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 2.207884s.
2025-10-09 22:25:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/plot_heatmap".
2025-10-09 22:25:08 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:25:09 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.341934s.
2025-10-09 22:25:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/1d716c00daeb0843d2fae808858e40a70c082f74/cc_mask".
2025-10-09 22:25:10 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:25:10 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.596144s.
2025-10-09 22:25:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1d716c00daeb0843d2fae808858e40a70c082f74/mosaic_fa".
2025-10-09 22:25:12 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:25:14 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.880835s.
2025-10-09 22:25:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1d716c00daeb0843d2fae808858e40a70c082f74/mosaic_md".
2025-10-09 22:25:16 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:25:18 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 2.029416s.
2025-10-09 22:25:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1d716c00daeb0843d2fae808858e40a70c082f74/plot_heatmap".
2025-10-09 22:25:20 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:25:21 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.324367s.
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/35f55bd6d2558681e18405c99e7c55447677be5d/ds_report_fa".
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005528s.
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/35f55bd6d2558681e18405c99e7c55447677be5d/ds_report_md".
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005268s.
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/35f55bd6d2558681e18405c99e7c55447677be5d/ds_report_hm".
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.00545s.
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cb8a556f24150a5846460b790b640daa5a0a0381/ds_report_fa".
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005521s.
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cb8a556f24150a5846460b790b640daa5a0a0381/ds_report_md".
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005366s.
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/cb8a556f24150a5846460b790b640daa5a0a0381/ds_report_hm".
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:22 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005218s.
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/ds_report_fa".
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005848s.
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/ds_report_md".
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005935s.
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8ae9e36019d615b9ff9cfa81c61307ed8cb4b29f/ds_report_hm".
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005659s.
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1d716c00daeb0843d2fae808858e40a70c082f74/ds_report_fa".
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.00591s.
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1d716c00daeb0843d2fae808858e40a70c082f74/ds_report_md".
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005838s.
2025-10-09 22:25:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1d716c00daeb0843d2fae808858e40a70c082f74/ds_report_hm".
2025-10-09 22:25:24 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:25:24 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.006428s.
2025-10-09 22:25:24 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:25:24 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:25:32 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 8.106296s.
2025-10-09 22:25:34 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:25:34 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:25:42 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 8.07814s.
2025-10-09 22:25:44 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:25:44 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:25:52 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 7.9433240000000005s.
2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:25:54 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:25:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/Enhance".
2025-10-09 22:25:56 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:25:57 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.636481s.
2025-10-09 22:25:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/format_tpm_names".
2025-10-09 22:25:58 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:26:00 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.713648s.
2025-10-09 22:26:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/Grad".
2025-10-09 22:26:00 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 7.222548s.
2025-10-09 22:26:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/apply_mask".
2025-10-09 22:26:08 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:26:08 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.271128s.
2025-10-09 22:26:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/GradientThreshold".
2025-10-09 22:26:10 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:26:26 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 15.747389s.
2025-10-09 22:26:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/segmentation".
2025-10-09 22:26:26 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:27:50 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 84.033195s.
2025-10-09 22:27:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/ArtifactMask".
2025-10-09 22:27:52 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:27:59 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 6.8321190000000005s.
2025-10-09 22:28:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/PlotHeadmask".
2025-10-09 22:28:00 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:28:04 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 3.404635s.
2025-10-09 22:28:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/harmonize".
2025-10-09 22:28:04 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:28:05 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 1.11639s.
2025-10-09 22:28:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/PlotSegmentation".
2025-10-09 22:28:06 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:28:10 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 3.8363519999999998s.
2025-10-09 22:28:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/provenance".
2025-10-09 22:28:10 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:28:10 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.059607s.
2025-10-09 22:28:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/ComputeQI2".
2025-10-09 22:28:10 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:28:11 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.283975s.
2025-10-09 22:28:11 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:28:11 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/aac7621cdf2dca9d20df2f6c5bc86b0db2caa870/ComputeQI2)
2025-10-09 22:28:11 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=127) crashed: /var/lib/condor/execute/dir_470406/ds/logs/crash-20251009-222811-fhoffstaedter-ComputeQI2.a0-1f31e6ac-5e6f-4b3a-9ca2-9657ac5c5967.txt
get(ok): sourcedata/raw/sub-cIVs034/ses-s1Bx1/anat/sub-cIVs034_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs034/ses-s1Bx1/dwi/sub-cIVs034_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-114_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs034/ses-s1Bx1/dwi/sub-cIVs034_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs034/ses-s1Bx1/dwi/sub-cIVs034_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-115_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs034/ses-s1Bx1/dwi/sub-cIVs034_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-218_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs034/ses-s1Bx1/dwi/sub-cIVs034_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs034/ses-s1Bx1/dwi/sub-cIVs034_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs034 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_470406/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 9)
run (error: 1)
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