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ds003416-mriqc/logs/sub-cIVs029_10066407.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

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install(ok): /var/lib/condor/execute/dir_3928579/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3928579/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3928579/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_3928579/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:57:48 | IMPORTANT | mriqc | Extracting metadata and entities for 2 input runs of modality 't1w'...
2025-10-09 21:57:49 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:57:49 | IMPORTANT | mriqc | Extracting metadata and entities for 12 input runs of modality 'dwi'...
2025-10-09 21:57:49 | WARNING | nipype.workflow | 4 cannot be processed (too short or too long)
2025-10-09 21:57:49 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:57:49 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215747_5382be11-c88e-4041-b709-491425ea1d65.toml.
2025-10-09 21:57:53 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:57:54 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:57:54 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 8 NIfTI files..
2025-10-09 21:57:54 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 2 NIfTI files..
2025-10-09 21:57:58 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:58:02 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:58:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/29a25d79cdc8057b8fe05258f05e277e27c85d38/conform".
2025-10-09 21:58:02 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:58:03 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.256511s.
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/conform".
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.660147s.
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/load_bmat".
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.150396s.
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/provenance".
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.018527s.
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/sanitize".
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.676607s.
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/3d01b867804534a375f451bbb64c42fe0785ec43/load_bmat".
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.020486s.
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/3d01b867804534a375f451bbb64c42fe0785ec43/provenance".
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.018265s.
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/3d01b867804534a375f451bbb64c42fe0785ec43/sanitize".
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:13 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.675667s.
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/94e3ca2939edee18f1110580b9f3e49f247da3d2/load_bmat".
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.021841s.
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/94e3ca2939edee18f1110580b9f3e49f247da3d2/provenance".
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.023516s.
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/94e3ca2939edee18f1110580b9f3e49f247da3d2/sanitize".
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:17 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.87593s.
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/load_bmat".
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.020867s.
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/provenance".
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.023619s.
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/sanitize".
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:21 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.875917s.
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/65bb0a98719990cac6d839bb57ed30107ce9ef78/load_bmat".
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.02164s.
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/65bb0a98719990cac6d839bb57ed30107ce9ef78/provenance".
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.019165s.
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/65bb0a98719990cac6d839bb57ed30107ce9ef78/sanitize".
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:25 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.700446s.
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/b8b7010bb76c2091f59608cb49b16020e5c068f4/load_bmat".
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.021115s.
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/b8b7010bb76c2091f59608cb49b16020e5c068f4/provenance".
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.01914s.
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/b8b7010bb76c2091f59608cb49b16020e5c068f4/sanitize".
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:29 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.669267s.
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/2171726b455146ddf61bb9e5faa48f0c21f53e9b/load_bmat".
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.022791s.
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/2171726b455146ddf61bb9e5faa48f0c21f53e9b/provenance".
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.024618s.
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/2171726b455146ddf61bb9e5faa48f0c21f53e9b/sanitize".
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:33 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.880106s.
2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/ff59341f6e1477e6575e9a3c531d41f4c7669f68/load_bmat".
2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.021726s.
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/ff59341f6e1477e6575e9a3c531d41f4c7669f68/provenance".
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.02446s.
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/ff59341f6e1477e6575e9a3c531d41f4c7669f68/sanitize".
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:37 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.890096s.
2025-10-09 21:58:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/pre_clip".
2025-10-09 21:58:38 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:58:46 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 7.377238s.
2025-10-09 21:58:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/29a25d79cdc8057b8fe05258f05e277e27c85d38/RotationMask".
2025-10-09 21:58:46 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:58:47 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.712823s.
2025-10-09 21:58:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/PlotMosaicNoise".
2025-10-09 21:58:48 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:58:52 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.229551s.
2025-10-09 21:58:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/pre_clip".
2025-10-09 21:58:54 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:59:03 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 8.333511s.
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/RotationMask".
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:59:05 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.746282s.
2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/PlotMosaicNoise".
2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:59:11 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.348834s.
2025-10-09 21:59:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/shells".
2025-10-09 21:59:12 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:12 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000641s.
2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/piesno".
2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:15 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.75836s.
2025-10-09 21:59:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/3d01b867804534a375f451bbb64c42fe0785ec43/shells".
2025-10-09 21:59:16 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:16 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000607s.
2025-10-09 21:59:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/3d01b867804534a375f451bbb64c42fe0785ec43/piesno".
2025-10-09 21:59:18 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:19 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.819122s.
2025-10-09 21:59:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/94e3ca2939edee18f1110580b9f3e49f247da3d2/shells".
2025-10-09 21:59:20 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:20 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000658s.
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/94e3ca2939edee18f1110580b9f3e49f247da3d2/piesno".
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:23 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.988971s.
2025-10-09 21:59:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/shells".
2025-10-09 21:59:24 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:24 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.001738s.
2025-10-09 21:59:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/piesno".
2025-10-09 21:59:26 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:27 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.045626s.
2025-10-09 21:59:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/65bb0a98719990cac6d839bb57ed30107ce9ef78/shells".
2025-10-09 21:59:28 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:28 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000684s.
2025-10-09 21:59:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/65bb0a98719990cac6d839bb57ed30107ce9ef78/piesno".
2025-10-09 21:59:30 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:31 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.815164s.
2025-10-09 21:59:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/b8b7010bb76c2091f59608cb49b16020e5c068f4/shells".
2025-10-09 21:59:32 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:32 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000605s.
2025-10-09 21:59:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/b8b7010bb76c2091f59608cb49b16020e5c068f4/piesno".
2025-10-09 21:59:34 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:35 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.808698s.
2025-10-09 21:59:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/2171726b455146ddf61bb9e5faa48f0c21f53e9b/shells".
2025-10-09 21:59:36 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:36 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000649s.
2025-10-09 21:59:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/2171726b455146ddf61bb9e5faa48f0c21f53e9b/piesno".
2025-10-09 21:59:38 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:39 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.044658s.
2025-10-09 21:59:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/ff59341f6e1477e6575e9a3c531d41f4c7669f68/shells".
2025-10-09 21:59:40 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:40 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000673s.
2025-10-09 21:59:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/ff59341f6e1477e6575e9a3c531d41f4c7669f68/piesno".
2025-10-09 21:59:42 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:43 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.0176s.
2025-10-09 21:59:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/pre_n4".
2025-10-09 21:59:44 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:01:29 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 104.200387s.
2025-10-09 22:01:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/ds_report_background".
2025-10-09 22:01:30 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:01:30 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.00699s.
2025-10-09 22:01:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/pre_n4".
2025-10-09 22:01:30 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:03:15 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 104.30273s.
2025-10-09 22:03:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/ds_report_background".
2025-10-09 22:03:16 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:03:16 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.003968s.
2025-10-09 22:03:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/dwi_ref".
2025-10-09 22:03:16 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:17 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.435835s.
2025-10-09 22:03:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/get_lowb".
2025-10-09 22:03:18 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:19 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.289133s.
2025-10-09 22:03:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/3d01b867804534a375f451bbb64c42fe0785ec43/dwi_ref".
2025-10-09 22:03:20 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:21 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.43533s.
2025-10-09 22:03:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/3d01b867804534a375f451bbb64c42fe0785ec43/get_lowb".
2025-10-09 22:03:22 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:23 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.268885s.
2025-10-09 22:03:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/94e3ca2939edee18f1110580b9f3e49f247da3d2/dwi_ref".
2025-10-09 22:03:24 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:25 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.544517s.
2025-10-09 22:03:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/94e3ca2939edee18f1110580b9f3e49f247da3d2/get_lowb".
2025-10-09 22:03:26 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:27 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.338723s.
2025-10-09 22:03:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/dwi_ref".
2025-10-09 22:03:28 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:29 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.523227s.
2025-10-09 22:03:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/get_lowb".
2025-10-09 22:03:30 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:31 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.337864s.
2025-10-09 22:03:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/65bb0a98719990cac6d839bb57ed30107ce9ef78/dwi_ref".
2025-10-09 22:03:32 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:33 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.434321s.
2025-10-09 22:03:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/65bb0a98719990cac6d839bb57ed30107ce9ef78/get_lowb".
2025-10-09 22:03:34 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:35 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.283803s.
2025-10-09 22:03:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/b8b7010bb76c2091f59608cb49b16020e5c068f4/dwi_ref".
2025-10-09 22:03:36 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:37 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.423365s.
2025-10-09 22:03:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/b8b7010bb76c2091f59608cb49b16020e5c068f4/get_lowb".
2025-10-09 22:03:38 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:39 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.275227s.
2025-10-09 22:03:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/2171726b455146ddf61bb9e5faa48f0c21f53e9b/dwi_ref".
2025-10-09 22:03:40 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:41 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.529186s.
2025-10-09 22:03:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/2171726b455146ddf61bb9e5faa48f0c21f53e9b/get_lowb".
2025-10-09 22:03:42 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:43 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.347985s.
2025-10-09 22:03:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/ff59341f6e1477e6575e9a3c531d41f4c7669f68/dwi_ref".
2025-10-09 22:03:44 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:03:45 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.532309s.
2025-10-09 22:03:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/ff59341f6e1477e6575e9a3c531d41f4c7669f68/get_lowb".
2025-10-09 22:03:46 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:03:47 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.369604s.
2025-10-09 22:03:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/synthstrip".
2025-10-09 22:03:48 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:04:58 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 69.579083s.
2025-10-09 22:04:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/synthstrip".
2025-10-09 22:04:58 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:06:06 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 68.015095s.
2025-10-09 22:06:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/pre_clip".
2025-10-09 22:06:08 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:06:09 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.527411s.
2025-10-09 22:06:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/SharpenEPI".
2025-10-09 22:06:10 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:16 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.960372s.
2025-10-09 22:06:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/hmc_b0".
2025-10-09 22:06:18 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:06:35 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 16.230346s.
2025-10-09 22:06:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3d01b867804534a375f451bbb64c42fe0785ec43/pre_clip".
2025-10-09 22:06:36 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:06:37 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.525512s.
2025-10-09 22:06:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3d01b867804534a375f451bbb64c42fe0785ec43/SharpenEPI".
2025-10-09 22:06:38 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:44 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.948673s.
2025-10-09 22:06:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/3d01b867804534a375f451bbb64c42fe0785ec43/hmc_b0".
2025-10-09 22:06:46 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:03 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 16.299029s.
2025-10-09 22:07:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/pre_clip".
2025-10-09 22:07:04 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:05 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.525426s.
2025-10-09 22:07:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/94e3ca2939edee18f1110580b9f3e49f247da3d2/SharpenEPI".
2025-10-09 22:07:06 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:12 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.950068s.
2025-10-09 22:07:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/94e3ca2939edee18f1110580b9f3e49f247da3d2/hmc_b0".
2025-10-09 22:07:14 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:35 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.580324s.
2025-10-09 22:07:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/pre_clip".
2025-10-09 22:07:36 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:37 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.502516s.
2025-10-09 22:07:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/SharpenEPI".
2025-10-09 22:07:38 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:44 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.964338s.
2025-10-09 22:07:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/hmc_b0".
2025-10-09 22:07:46 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:07 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.306423s.
2025-10-09 22:08:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/pre_clip".
2025-10-09 22:08:08 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:09 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.519502s.
2025-10-09 22:08:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/65bb0a98719990cac6d839bb57ed30107ce9ef78/SharpenEPI".
2025-10-09 22:08:10 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:16 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.940236s.
2025-10-09 22:08:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/65bb0a98719990cac6d839bb57ed30107ce9ef78/hmc_b0".
2025-10-09 22:08:18 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:35 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 16.155859s.
2025-10-09 22:08:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/pre_clip".
2025-10-09 22:08:36 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:37 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.517179s.
2025-10-09 22:08:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b8b7010bb76c2091f59608cb49b16020e5c068f4/SharpenEPI".
2025-10-09 22:08:38 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:44 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.961262s.
2025-10-09 22:08:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/b8b7010bb76c2091f59608cb49b16020e5c068f4/hmc_b0".
2025-10-09 22:08:46 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:03 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 16.487878s.
2025-10-09 22:09:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/pre_clip".
2025-10-09 22:09:04 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:09:05 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.538s.
2025-10-09 22:09:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2171726b455146ddf61bb9e5faa48f0c21f53e9b/SharpenEPI".
2025-10-09 22:09:06 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:12 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.9541s.
2025-10-09 22:09:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/2171726b455146ddf61bb9e5faa48f0c21f53e9b/hmc_b0".
2025-10-09 22:09:14 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:35 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.60584s.
2025-10-09 22:09:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/pre_clip".
2025-10-09 22:09:36 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:09:37 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.539864s.
2025-10-09 22:09:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ff59341f6e1477e6575e9a3c531d41f4c7669f68/SharpenEPI".
2025-10-09 22:09:38 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:44 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.954506s.
2025-10-09 22:09:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/ff59341f6e1477e6575e9a3c531d41f4c7669f68/hmc_b0".
2025-10-09 22:09:46 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:10:07 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.781682s.
2025-10-09 22:10:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/post_n4".
2025-10-09 22:10:08 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:29 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 20.781664s.
2025-10-09 22:10:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/29a25d79cdc8057b8fe05258f05e277e27c85d38/smoothness".
2025-10-09 22:10:30 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:10:34 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 3.815935s.
2025-10-09 22:10:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/PlotMosaicZoomed".
2025-10-09 22:10:34 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:10:38 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.787782s.
2025-10-09 22:10:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/PlotBrainmask".
2025-10-09 22:10:38 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:10:42 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.060343s.
2025-10-09 22:10:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/post_n4".
2025-10-09 22:10:43 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:04 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 21.155042s.
2025-10-09 22:11:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/smoothness".
2025-10-09 22:11:05 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:11:08 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 3.784694s.
2025-10-09 22:11:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/PlotMosaicZoomed".
2025-10-09 22:11:08 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:11:12 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.877582s.
2025-10-09 22:11:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/PlotBrainmask".
2025-10-09 22:11:12 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:11:16 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.082151s.
2025-10-09 22:11:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/pre_n4".
2025-10-09 22:11:16 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:22 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.958651s.
2025-10-09 22:11:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3d01b867804534a375f451bbb64c42fe0785ec43/pre_n4".
2025-10-09 22:11:25 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:30 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.951428s.
2025-10-09 22:11:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/pre_n4".
2025-10-09 22:11:33 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:38 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.928285s.
2025-10-09 22:11:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/pre_n4".
2025-10-09 22:11:41 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:46 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.94703s.
2025-10-09 22:11:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/pre_n4".
2025-10-09 22:11:49 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:54 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.948576s.
2025-10-09 22:11:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/pre_n4".
2025-10-09 22:11:57 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:02 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.937056s.
2025-10-09 22:12:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/pre_n4".
2025-10-09 22:12:05 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:10 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.95567s.
2025-10-09 22:12:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/pre_n4".
2025-10-09 22:12:13 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:18 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.955612s.
2025-10-09 22:12:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/final_masked".
2025-10-09 22:12:21 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:12:21 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.236205s.
2025-10-09 22:12:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/SpatialNormalization".
2025-10-09 22:12:23 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:12:23 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:13:28 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:13:28 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:13:42 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:13:43 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:13:43 | INFO | niworkflows | Generating visual report
2025-10-09 22:13:58 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 94.998775s.
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/ds_report_zoomed".
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004117s.
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/ds_report_bmask".
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.003994s.
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/final_masked".
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.252523s.
2025-10-09 22:14:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/SpatialNormalization".
2025-10-09 22:14:01 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:14:01 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:15:07 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:15:07 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:15:21 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:15:22 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:15:22 | INFO | niworkflows | Generating visual report
2025-10-09 22:15:36 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 95.762894s.
2025-10-09 22:15:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/ds_report_zoomed".
2025-10-09 22:15:37 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:15:37 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.012097s.
2025-10-09 22:15:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/ds_report_bmask".
2025-10-09 22:15:37 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:15:37 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.003955s.
2025-10-09 22:15:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/synthstrip".
2025-10-09 22:15:37 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:16:15 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 37.816333s.
2025-10-09 22:16:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3d01b867804534a375f451bbb64c42fe0785ec43/synthstrip".
2025-10-09 22:16:17 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:16:54 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 37.814848s.
2025-10-09 22:16:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/synthstrip".
2025-10-09 22:16:55 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:17:32 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 37.808812s.
2025-10-09 22:17:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/synthstrip".
2025-10-09 22:17:33 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:18:10 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 37.798416s.
2025-10-09 22:18:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/synthstrip".
2025-10-09 22:18:11 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:18:44 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.287034s.
2025-10-09 22:18:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/synthstrip".
2025-10-09 22:18:45 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:19:18 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.271228s.
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/synthstrip".
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:19:52 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.240551s.
2025-10-09 22:19:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/synthstrip".
2025-10-09 22:19:53 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:20:26 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.289374s.
2025-10-09 22:20:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/ds_report_norm".
2025-10-09 22:20:27 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:20:27 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004013s.
2025-10-09 22:20:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/0424eecaa9f92fbc27c7f27d2849c837b286ee9d/ds_report_norm".
2025-10-09 22:20:27 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:20:27 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.003885s.
2025-10-09 22:20:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/post_n4".
2025-10-09 22:20:27 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:20:29 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.8915009999999999s.
2025-10-09 22:20:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/sp_mask".
2025-10-09 22:20:31 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:20:31 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.500769s.
2025-10-09 22:20:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/drift".
2025-10-09 22:20:33 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:20:33 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0011, 0.9959, 1.005, 1.0, 1.0007, 0.9985.
2025-10-09 22:20:34 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.255129s.
2025-10-09 22:20:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/EPI2MNI".
2025-10-09 22:20:35 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:20:35 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:20:58 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/EPI2MNI/stderr.nipype-init).
2025-10-09 22:20:58 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:20:58 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/SharpenEPI/sub-cIVs029_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-115_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/SharpenEPI/sub-cIVs029_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-115_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/SharpenEPI/sub-cIVs029_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-115_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:21:54 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:21:54 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:21:54 | INFO | niworkflows | Generating visual report
2025-10-09 22:22:08 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 93.738104s.
2025-10-09 22:22:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3d01b867804534a375f451bbb64c42fe0785ec43/post_n4".
2025-10-09 22:22:09 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:22:11 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.9315790000000002s.
2025-10-09 22:22:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/3d01b867804534a375f451bbb64c42fe0785ec43/sp_mask".
2025-10-09 22:22:13 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:22:13 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.474185s.
2025-10-09 22:22:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/3d01b867804534a375f451bbb64c42fe0785ec43/drift".
2025-10-09 22:22:15 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:22:15 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9952, 0.9982, 0.9993, 0.9976, 0.9942, 0.9997.
2025-10-09 22:22:16 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.251128s.
2025-10-09 22:22:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3d01b867804534a375f451bbb64c42fe0785ec43/EPI2MNI".
2025-10-09 22:22:17 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:22:17 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:22:39 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:22:39 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3d01b867804534a375f451bbb64c42fe0785ec43/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3d01b867804534a375f451bbb64c42fe0785ec43/SharpenEPI/sub-cIVs029_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-218_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3d01b867804534a375f451bbb64c42fe0785ec43/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3d01b867804534a375f451bbb64c42fe0785ec43/SharpenEPI/sub-cIVs029_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-218_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3d01b867804534a375f451bbb64c42fe0785ec43/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3d01b867804534a375f451bbb64c42fe0785ec43/SharpenEPI/sub-cIVs029_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-218_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3d01b867804534a375f451bbb64c42fe0785ec43/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:23:35 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:23:35 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3d01b867804534a375f451bbb64c42fe0785ec43/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:23:35 | INFO | niworkflows | Generating visual report
2025-10-09 22:23:50 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.73459s.
2025-10-09 22:23:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/post_n4".
2025-10-09 22:23:51 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:23:53 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.93593s.
2025-10-09 22:23:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/94e3ca2939edee18f1110580b9f3e49f247da3d2/sp_mask".
2025-10-09 22:23:55 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:23:56 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.667498s.
2025-10-09 22:23:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/94e3ca2939edee18f1110580b9f3e49f247da3d2/drift".
2025-10-09 22:23:57 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:23:57 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9987, 0.9954, 1.0039, 1.0009, 1.0026, 0.9958, 0.9957, 0.9957.
2025-10-09 22:23:58 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.615707s.
2025-10-09 22:23:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/94e3ca2939edee18f1110580b9f3e49f247da3d2/EPI2MNI".
2025-10-09 22:23:59 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:23:59 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:24:22 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/94e3ca2939edee18f1110580b9f3e49f247da3d2/EPI2MNI/stderr.nipype-init).
2025-10-09 22:24:22 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:24:22 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/94e3ca2939edee18f1110580b9f3e49f247da3d2/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/94e3ca2939edee18f1110580b9f3e49f247da3d2/SharpenEPI/sub-cIVs029_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/94e3ca2939edee18f1110580b9f3e49f247da3d2/SharpenEPI/sub-cIVs029_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/94e3ca2939edee18f1110580b9f3e49f247da3d2/SharpenEPI/sub-cIVs029_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:25:17 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:25:17 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/94e3ca2939edee18f1110580b9f3e49f247da3d2/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:25:17 | INFO | niworkflows | Generating visual report
2025-10-09 22:25:32 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.726459s.
2025-10-09 22:25:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/post_n4".
2025-10-09 22:25:33 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:25:35 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.926812s.
2025-10-09 22:25:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/sp_mask".
2025-10-09 22:25:37 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:25:38 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.694411s.
2025-10-09 22:25:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/drift".
2025-10-09 22:25:39 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:25:39 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.997, 0.9974, 1.0018, 0.9955, 0.9948, 0.9956, 0.988, 0.9977.
2025-10-09 22:25:41 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.6168230000000001s.
2025-10-09 22:25:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/EPI2MNI".
2025-10-09 22:25:41 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:25:41 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:26:04 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/EPI2MNI/stderr.nipype-init).
2025-10-09 22:26:04 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:26:04 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/SharpenEPI/sub-cIVs029_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/SharpenEPI/sub-cIVs029_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/SharpenEPI/sub-cIVs029_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:27:00 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:27:00 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:27:00 | INFO | niworkflows | Generating visual report
2025-10-09 22:27:15 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 93.97658s.
2025-10-09 22:27:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/post_n4".
2025-10-09 22:27:17 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:27:19 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.9770729999999999s.
2025-10-09 22:27:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/65bb0a98719990cac6d839bb57ed30107ce9ef78/sp_mask".
2025-10-09 22:27:21 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:27:21 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.490919s.
2025-10-09 22:27:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/65bb0a98719990cac6d839bb57ed30107ce9ef78/drift".
2025-10-09 22:27:23 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:27:23 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0102, 1.0082, 1.0151, 1.0115, 1.006, 1.0003.
2025-10-09 22:27:24 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.307629s.
2025-10-09 22:27:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/65bb0a98719990cac6d839bb57ed30107ce9ef78/EPI2MNI".
2025-10-09 22:27:25 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:27:25 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:27:47 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/65bb0a98719990cac6d839bb57ed30107ce9ef78/EPI2MNI/stderr.nipype-init).
2025-10-09 22:27:47 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:27:47 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/65bb0a98719990cac6d839bb57ed30107ce9ef78/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/65bb0a98719990cac6d839bb57ed30107ce9ef78/SharpenEPI/sub-cIVs029_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/65bb0a98719990cac6d839bb57ed30107ce9ef78/SharpenEPI/sub-cIVs029_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/65bb0a98719990cac6d839bb57ed30107ce9ef78/SharpenEPI/sub-cIVs029_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:28:44 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:28:44 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/65bb0a98719990cac6d839bb57ed30107ce9ef78/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:28:44 | INFO | niworkflows | Generating visual report
2025-10-09 22:28:58 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 93.435121s.
2025-10-09 22:28:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/post_n4".
2025-10-09 22:28:59 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:29:01 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.9739659999999999s.
2025-10-09 22:29:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/b8b7010bb76c2091f59608cb49b16020e5c068f4/sp_mask".
2025-10-09 22:29:03 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:29:04 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.489245s.
2025-10-09 22:29:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/b8b7010bb76c2091f59608cb49b16020e5c068f4/drift".
2025-10-09 22:29:05 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:29:05 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9956, 0.9966, 0.9998, 0.9986, 0.994, 1.0006.
2025-10-09 22:29:06 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.301595s.
2025-10-09 22:29:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b8b7010bb76c2091f59608cb49b16020e5c068f4/EPI2MNI".
2025-10-09 22:29:07 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:29:07 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:29:28 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b8b7010bb76c2091f59608cb49b16020e5c068f4/EPI2MNI/stderr.nipype-init).
2025-10-09 22:29:28 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:29:28 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b8b7010bb76c2091f59608cb49b16020e5c068f4/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b8b7010bb76c2091f59608cb49b16020e5c068f4/SharpenEPI/sub-cIVs029_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b8b7010bb76c2091f59608cb49b16020e5c068f4/SharpenEPI/sub-cIVs029_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b8b7010bb76c2091f59608cb49b16020e5c068f4/SharpenEPI/sub-cIVs029_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:30:25 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:30:25 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b8b7010bb76c2091f59608cb49b16020e5c068f4/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:30:25 | INFO | niworkflows | Generating visual report
2025-10-09 22:30:40 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.638075s.
2025-10-09 22:30:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/post_n4".
2025-10-09 22:30:41 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:30:43 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.990139s.
2025-10-09 22:30:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/2171726b455146ddf61bb9e5faa48f0c21f53e9b/sp_mask".
2025-10-09 22:30:45 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:30:46 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.709559s.
2025-10-09 22:30:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/2171726b455146ddf61bb9e5faa48f0c21f53e9b/drift".
2025-10-09 22:30:47 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:30:47 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9992, 0.9939, 0.999, 0.9949, 0.9918, 0.9909, 0.99, 1.0.
2025-10-09 22:30:49 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.6441400000000002s.
2025-10-09 22:30:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2171726b455146ddf61bb9e5faa48f0c21f53e9b/EPI2MNI".
2025-10-09 22:30:49 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:30:49 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:31:11 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:31:11 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2171726b455146ddf61bb9e5faa48f0c21f53e9b/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2171726b455146ddf61bb9e5faa48f0c21f53e9b/SharpenEPI/sub-cIVs029_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2171726b455146ddf61bb9e5faa48f0c21f53e9b/SharpenEPI/sub-cIVs029_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2171726b455146ddf61bb9e5faa48f0c21f53e9b/SharpenEPI/sub-cIVs029_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:32:08 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:32:08 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2171726b455146ddf61bb9e5faa48f0c21f53e9b/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:32:08 | INFO | niworkflows | Generating visual report
2025-10-09 22:32:22 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 93.106297s.
2025-10-09 22:32:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/post_n4".
2025-10-09 22:32:23 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:32:25 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 1.98162s.
2025-10-09 22:32:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/ff59341f6e1477e6575e9a3c531d41f4c7669f68/sp_mask".
2025-10-09 22:32:27 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:32:28 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.713954s.
2025-10-09 22:32:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/ff59341f6e1477e6575e9a3c531d41f4c7669f68/drift".
2025-10-09 22:32:29 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:32:29 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 1.0, 0.9973, 0.9971, 0.9997, 0.9989, 0.9946, 0.9925, 1.0004.
2025-10-09 22:32:31 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.624582s.
2025-10-09 22:32:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ff59341f6e1477e6575e9a3c531d41f4c7669f68/EPI2MNI".
2025-10-09 22:32:31 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:32:31 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:32:51 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ff59341f6e1477e6575e9a3c531d41f4c7669f68/EPI2MNI/stderr.nipype-init).
2025-10-09 22:32:51 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:32:51 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ff59341f6e1477e6575e9a3c531d41f4c7669f68/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ff59341f6e1477e6575e9a3c531d41f4c7669f68/SharpenEPI/sub-cIVs029_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ff59341f6e1477e6575e9a3c531d41f4c7669f68/SharpenEPI/sub-cIVs029_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ff59341f6e1477e6575e9a3c531d41f4c7669f68/SharpenEPI/sub-cIVs029_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:33:47 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:33:47 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ff59341f6e1477e6575e9a3c531d41f4c7669f68/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:33:47 | INFO | niworkflows | Generating visual report
2025-10-09 22:34:02 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 90.397275s.
2025-10-09 22:34:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/final_masked".
2025-10-09 22:34:03 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:34:03 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.028673s.
2025-10-09 22:34:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/dwidenoise".
2025-10-09 22:34:05 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:34:22 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 16.382316s.
2025-10-09 22:34:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/ResampleSegmentation".
2025-10-09 22:34:23 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:34:26 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.938565s.
2025-10-09 22:34:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/3d01b867804534a375f451bbb64c42fe0785ec43/final_masked".
2025-10-09 22:34:27 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:34:27 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.028781s.
2025-10-09 22:34:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/3d01b867804534a375f451bbb64c42fe0785ec43/dwidenoise".
2025-10-09 22:34:29 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:34:46 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 16.357496s.
2025-10-09 22:34:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/3d01b867804534a375f451bbb64c42fe0785ec43/ResampleSegmentation".
2025-10-09 22:34:47 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:34:50 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.935794s.
2025-10-09 22:34:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/final_masked".
2025-10-09 22:34:51 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:34:51 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.028817s.
2025-10-09 22:34:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/94e3ca2939edee18f1110580b9f3e49f247da3d2/dwidenoise".
2025-10-09 22:34:53 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:35:23 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 29.716549s.
2025-10-09 22:35:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/94e3ca2939edee18f1110580b9f3e49f247da3d2/ResampleSegmentation".
2025-10-09 22:35:23 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:35:26 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.122475s.
2025-10-09 22:35:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/final_masked".
2025-10-09 22:35:27 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:35:27 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.034088s.
2025-10-09 22:35:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/dwidenoise".
2025-10-09 22:35:29 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:35:59 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 29.544706s.
2025-10-09 22:35:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/ResampleSegmentation".
2025-10-09 22:35:59 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:36:02 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.918866s.
2025-10-09 22:36:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/final_masked".
2025-10-09 22:36:03 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:36:03 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.029181s.
2025-10-09 22:36:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/65bb0a98719990cac6d839bb57ed30107ce9ef78/dwidenoise".
2025-10-09 22:36:05 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:36:22 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 17.04506s.
2025-10-09 22:36:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/65bb0a98719990cac6d839bb57ed30107ce9ef78/ResampleSegmentation".
2025-10-09 22:36:23 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:36:26 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.955039s.
2025-10-09 22:36:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/final_masked".
2025-10-09 22:36:27 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:36:27 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.029277s.
2025-10-09 22:36:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/b8b7010bb76c2091f59608cb49b16020e5c068f4/dwidenoise".
2025-10-09 22:36:29 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:36:46 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 16.992823s.
2025-10-09 22:36:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/b8b7010bb76c2091f59608cb49b16020e5c068f4/ResampleSegmentation".
2025-10-09 22:36:47 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:36:50 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.988438s.
2025-10-09 22:36:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/final_masked".
2025-10-09 22:36:51 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:36:51 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.029278s.
2025-10-09 22:36:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/2171726b455146ddf61bb9e5faa48f0c21f53e9b/dwidenoise".
2025-10-09 22:36:53 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:37:24 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 30.830267s.
2025-10-09 22:37:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/2171726b455146ddf61bb9e5faa48f0c21f53e9b/ResampleSegmentation".
2025-10-09 22:37:25 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:37:28 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.951263s.
2025-10-09 22:37:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/final_masked".
2025-10-09 22:37:29 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:37:29 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.029417s.
2025-10-09 22:37:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/ff59341f6e1477e6575e9a3c531d41f4c7669f68/dwidenoise".
2025-10-09 22:37:31 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:38:02 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 30.931515s.
2025-10-09 22:38:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ff59341f6e1477e6575e9a3c531d41f4c7669f68/ResampleSegmentation".
2025-10-09 22:38:03 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:38:06 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.969514s.
2025-10-09 22:38:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/dwimodel".
2025-10-09 22:38:07 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:10 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.085343s.
2025-10-09 22:38:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/estimate_sigma".
2025-10-09 22:38:11 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:11 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.031841s.
2025-10-09 22:38:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/get_wm".
2025-10-09 22:38:13 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:13 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.030093s.
2025-10-09 22:38:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/3d01b867804534a375f451bbb64c42fe0785ec43/dwimodel".
2025-10-09 22:38:15 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:18 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.061166s.
2025-10-09 22:38:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/3d01b867804534a375f451bbb64c42fe0785ec43/estimate_sigma".
2025-10-09 22:38:19 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:19 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.031559s.
2025-10-09 22:38:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3d01b867804534a375f451bbb64c42fe0785ec43/get_wm".
2025-10-09 22:38:21 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:21 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.02976s.
2025-10-09 22:38:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/94e3ca2939edee18f1110580b9f3e49f247da3d2/dwimodel".
2025-10-09 22:38:23 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:27 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.424611s.
2025-10-09 22:38:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/94e3ca2939edee18f1110580b9f3e49f247da3d2/estimate_sigma".
2025-10-09 22:38:27 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:27 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.031756s.
2025-10-09 22:38:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/get_wm".
2025-10-09 22:38:29 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:29 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029652s.
2025-10-09 22:38:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/dwimodel".
2025-10-09 22:38:31 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:35 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.390631s.
2025-10-09 22:38:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/estimate_sigma".
2025-10-09 22:38:35 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:35 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.031619s.
2025-10-09 22:38:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/get_wm".
2025-10-09 22:38:37 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:37 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029624s.
2025-10-09 22:38:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/65bb0a98719990cac6d839bb57ed30107ce9ef78/dwimodel".
2025-10-09 22:38:39 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:42 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.159623s.
2025-10-09 22:38:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/65bb0a98719990cac6d839bb57ed30107ce9ef78/estimate_sigma".
2025-10-09 22:38:43 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:43 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.03186s.
2025-10-09 22:38:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/get_wm".
2025-10-09 22:38:45 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:45 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029352s.
2025-10-09 22:38:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/b8b7010bb76c2091f59608cb49b16020e5c068f4/dwimodel".
2025-10-09 22:38:47 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:50 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.148075s.
2025-10-09 22:38:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/b8b7010bb76c2091f59608cb49b16020e5c068f4/estimate_sigma".
2025-10-09 22:38:51 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:51 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.031805s.
2025-10-09 22:38:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/get_wm".
2025-10-09 22:38:53 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:53 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029424s.
2025-10-09 22:38:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/2171726b455146ddf61bb9e5faa48f0c21f53e9b/dwimodel".
2025-10-09 22:38:55 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.539072s.
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/2171726b455146ddf61bb9e5faa48f0c21f53e9b/estimate_sigma".
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.031992s.
2025-10-09 22:39:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/get_wm".
2025-10-09 22:39:01 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:01 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029427s.
2025-10-09 22:39:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/ff59341f6e1477e6575e9a3c531d41f4c7669f68/dwimodel".
2025-10-09 22:39:03 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:39:07 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.52097s.
2025-10-09 22:39:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/ff59341f6e1477e6575e9a3c531d41f4c7669f68/estimate_sigma".
2025-10-09 22:39:07 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:07 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.031045s.
2025-10-09 22:39:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/get_wm".
2025-10-09 22:39:09 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:09 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029447s.
2025-10-09 22:39:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/cc_mask".
2025-10-09 22:39:11 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:12 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.429486s.
2025-10-09 22:39:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/mosaic_fa".
2025-10-09 22:39:13 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:14 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.112291s.
2025-10-09 22:39:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/mosaic_md".
2025-10-09 22:39:15 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:17 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.355618s.
2025-10-09 22:39:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/plot_heatmap".
2025-10-09 22:39:17 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:18 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 0.991593s.
2025-10-09 22:39:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/3d01b867804534a375f451bbb64c42fe0785ec43/cc_mask".
2025-10-09 22:39:19 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:20 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.445707s.
2025-10-09 22:39:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3d01b867804534a375f451bbb64c42fe0785ec43/mosaic_fa".
2025-10-09 22:39:21 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:22 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.251398s.
2025-10-09 22:39:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3d01b867804534a375f451bbb64c42fe0785ec43/mosaic_md".
2025-10-09 22:39:23 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:24 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.194328s.
2025-10-09 22:39:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3d01b867804534a375f451bbb64c42fe0785ec43/plot_heatmap".
2025-10-09 22:39:25 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:26 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.177964s.
2025-10-09 22:39:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/94e3ca2939edee18f1110580b9f3e49f247da3d2/cc_mask".
2025-10-09 22:39:27 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:28 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.439609s.
2025-10-09 22:39:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/mosaic_fa".
2025-10-09 22:39:29 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:30 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.123731s.
2025-10-09 22:39:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/mosaic_md".
2025-10-09 22:39:31 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:33 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.363326s.
2025-10-09 22:39:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/plot_heatmap".
2025-10-09 22:39:33 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:34 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.01315s.
2025-10-09 22:39:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/cc_mask".
2025-10-09 22:39:35 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:36 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.420391s.
2025-10-09 22:39:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/mosaic_fa".
2025-10-09 22:39:37 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:38 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.234947s.
2025-10-09 22:39:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/mosaic_md".
2025-10-09 22:39:39 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:40 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.194312s.
2025-10-09 22:39:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/plot_heatmap".
2025-10-09 22:39:41 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:42 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.226569s.
2025-10-09 22:39:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/65bb0a98719990cac6d839bb57ed30107ce9ef78/cc_mask".
2025-10-09 22:39:43 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:44 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.419775s.
2025-10-09 22:39:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/mosaic_fa".
2025-10-09 22:39:45 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:46 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.107425s.
2025-10-09 22:39:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/mosaic_md".
2025-10-09 22:39:47 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:48 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.197154s.
2025-10-09 22:39:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/plot_heatmap".
2025-10-09 22:39:49 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:50 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.189085s.
2025-10-09 22:39:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/b8b7010bb76c2091f59608cb49b16020e5c068f4/cc_mask".
2025-10-09 22:39:51 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:52 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.443281s.
2025-10-09 22:39:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/mosaic_fa".
2025-10-09 22:39:53 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:54 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.100098s.
2025-10-09 22:39:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/mosaic_md".
2025-10-09 22:39:55 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:57 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.350668s.
2025-10-09 22:39:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/plot_heatmap".
2025-10-09 22:39:57 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:58 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 0.96576s.
2025-10-09 22:39:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/2171726b455146ddf61bb9e5faa48f0c21f53e9b/cc_mask".
2025-10-09 22:39:59 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:40:00 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.427238s.
2025-10-09 22:40:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/mosaic_fa".
2025-10-09 22:40:01 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:02 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.21092s.
2025-10-09 22:40:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/mosaic_md".
2025-10-09 22:40:03 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:04 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.177336s.
2025-10-09 22:40:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/plot_heatmap".
2025-10-09 22:40:05 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:40:06 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.01611s.
2025-10-09 22:40:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/ff59341f6e1477e6575e9a3c531d41f4c7669f68/cc_mask".
2025-10-09 22:40:07 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.420539s.
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/mosaic_fa".
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:11 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.343719s.
2025-10-09 22:40:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/mosaic_md".
2025-10-09 22:40:11 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:12 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.1805889999999999s.
2025-10-09 22:40:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/plot_heatmap".
2025-10-09 22:40:13 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:40:14 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.012727s.
2025-10-09 22:40:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/ds_report_fa".
2025-10-09 22:40:15 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:15 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004075s.
2025-10-09 22:40:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/ds_report_md".
2025-10-09 22:40:15 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:15 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004095s.
2025-10-09 22:40:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/6cd8dbb7491f3fc717baeca7d8e3ab3a897b8dec/ds_report_hm".
2025-10-09 22:40:15 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:15 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004111s.
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3d01b867804534a375f451bbb64c42fe0785ec43/ds_report_fa".
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004167s.
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3d01b867804534a375f451bbb64c42fe0785ec43/ds_report_md".
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004148s.
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/3d01b867804534a375f451bbb64c42fe0785ec43/ds_report_hm".
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004167s.
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/ds_report_fa".
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004163s.
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/ds_report_md".
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.003971s.
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/94e3ca2939edee18f1110580b9f3e49f247da3d2/ds_report_hm".
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.00414s.
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/ds_report_fa".
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004124s.
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/ds_report_md".
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.008029s.
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/a1dd17052440ad6413c4b4f2e3b11592fee8e33b/ds_report_hm".
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004133s.
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/ds_report_fa".
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004105s.
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/ds_report_md".
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004114s.
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/65bb0a98719990cac6d839bb57ed30107ce9ef78/ds_report_hm".
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004089s.
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/ds_report_fa".
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.003976s.
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/ds_report_md".
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.003937s.
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/b8b7010bb76c2091f59608cb49b16020e5c068f4/ds_report_hm".
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.003955s.
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/ds_report_fa".
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.003957s.
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/ds_report_md".
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:17 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.003969s.
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/2171726b455146ddf61bb9e5faa48f0c21f53e9b/ds_report_hm".
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.003963s.
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/ds_report_fa".
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.003963s.
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/ds_report_md".
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.003941s.
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ff59341f6e1477e6575e9a3c531d41f4c7669f68/ds_report_hm".
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.003968s.
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:40:25 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 7.207775s.
2025-10-09 22:40:26 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:40:26 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:40:33 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 7.180241s.
2025-10-09 22:40:34 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:40:34 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:40:41 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 7.149803s.
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/29a25d79cdc8057b8fe05258f05e277e27c85d38/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:40:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/29a25d79cdc8057b8fe05258f05e277e27c85d38/Enhance".
2025-10-09 22:40:44 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:40:45 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.501935s.
2025-10-09 22:40:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/29a25d79cdc8057b8fe05258f05e277e27c85d38/format_tpm_names".
2025-10-09 22:40:46 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:40:48 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.478662s.
2025-10-09 22:40:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/29a25d79cdc8057b8fe05258f05e277e27c85d38/Grad".
2025-10-09 22:40:48 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:40:54 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 5.968623s.
2025-10-09 22:40:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/29a25d79cdc8057b8fe05258f05e277e27c85d38/apply_mask".
2025-10-09 22:40:56 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:40:56 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.233832s.
2025-10-09 22:40:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/29a25d79cdc8057b8fe05258f05e277e27c85d38/GradientThreshold".
2025-10-09 22:40:58 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:41:09 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 11.269737s.
2025-10-09 22:41:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/29a25d79cdc8057b8fe05258f05e277e27c85d38/segmentation".
2025-10-09 22:41:10 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:42:24 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 74.160003s.
2025-10-09 22:42:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/29a25d79cdc8057b8fe05258f05e277e27c85d38/ArtifactMask".
2025-10-09 22:42:26 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:42:32 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 5.480055s.
2025-10-09 22:42:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/PlotHeadmask".
2025-10-09 22:42:32 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:42:35 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 2.6009219999999997s.
2025-10-09 22:42:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/29a25d79cdc8057b8fe05258f05e277e27c85d38/harmonize".
2025-10-09 22:42:36 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:42:37 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.828635s.
2025-10-09 22:42:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/29a25d79cdc8057b8fe05258f05e277e27c85d38/PlotSegmentation".
2025-10-09 22:42:38 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:42:41 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 2.956463s.
2025-10-09 22:42:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/29a25d79cdc8057b8fe05258f05e277e27c85d38/provenance".
2025-10-09 22:42:42 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:42:42 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.047822s.
2025-10-09 22:42:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/29a25d79cdc8057b8fe05258f05e277e27c85d38/ComputeQI2".
2025-10-09 22:42:42 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:42:43 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.238477s.
2025-10-09 22:42:43 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:42:43 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/29a25d79cdc8057b8fe05258f05e277e27c85d38/ComputeQI2)
2025-10-09 22:42:43 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=239) crashed: /var/lib/condor/execute/dir_3928579/ds/logs/crash-20251009-224243-fhoffstaedter-ComputeQI2.a0-9a116721-8856-4a97-9009-3e0ba30899de.txt
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx1/anat/sub-cIVs029_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx1/dwi/sub-cIVs029_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-114_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx1/dwi/sub-cIVs029_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx1/dwi/sub-cIVs029_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-115_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx1/dwi/sub-cIVs029_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-218_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx1/dwi/sub-cIVs029_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx1/dwi/sub-cIVs029_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx2/anat/sub-cIVs029_ses-s1Bx2_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx2/dwi/sub-cIVs029_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx2/dwi/sub-cIVs029_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx2/dwi/sub-cIVs029_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx2/dwi/sub-cIVs029_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx2/dwi/sub-cIVs029_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-111_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029/ses-s1Bx2/dwi/sub-cIVs029_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-214_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs029 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_3928579/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 16)
run (error: 1)
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