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ds003416-mriqc/logs/sub-cIVs028_10066463.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

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install(ok): /var/lib/condor/execute/dir_3950095/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3950095/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3950095/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_3950095/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:57:59 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-10-09 21:57:59 | IMPORTANT | mriqc | File size ('t1w'): 0.00|0.00 GB [maximum|average].
2025-10-09 21:57:59 | IMPORTANT | mriqc | Extracting metadata and entities for 6 input runs of modality 'dwi'...
2025-10-09 21:57:59 | WARNING | nipype.workflow | 2 cannot be processed (too short or too long)
2025-10-09 21:57:59 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:57:59 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215757_d2bd1a4a-44f8-4c69-89d3-f00bd1eedd51.toml.
2025-10-09 21:58:04 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:58:05 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:58:05 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 4 NIfTI files..
2025-10-09 21:58:06 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-10-09 21:58:11 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:58:15 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/bd5c0f274e6d8cb901383274685da05d19a3e386/conform".
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.27876s.
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/f727fc1da700d339ff62b229cd3cfe988516e5e7/load_bmat".
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.183337s.
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/f727fc1da700d339ff62b229cd3cfe988516e5e7/sanitize".
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.780253s.
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/f727fc1da700d339ff62b229cd3cfe988516e5e7/provenance".
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.018365s.
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/load_bmat".
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.022172s.
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/sanitize".
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.840058s.
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/provenance".
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.0184s.
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/load_bmat".
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.023455s.
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/sanitize".
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:29 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.01823s.
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/provenance".
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.023561s.
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/23f949cf11b1ea35b384923daee2210c10364799/load_bmat".
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.022497s.
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/23f949cf11b1ea35b384923daee2210c10364799/sanitize".
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:33 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.038695s.
2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/23f949cf11b1ea35b384923daee2210c10364799/provenance".
2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.023594s.
2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/pre_clip".
2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:58:44 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 9.790028s.
2025-10-09 21:58:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/bd5c0f274e6d8cb901383274685da05d19a3e386/RotationMask".
2025-10-09 21:58:46 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:58:47 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.931728s.
2025-10-09 21:58:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/PlotMosaicNoise".
2025-10-09 21:58:48 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:58:53 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.661924s.
2025-10-09 21:58:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/f727fc1da700d339ff62b229cd3cfe988516e5e7/shells".
2025-10-09 21:58:54 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:54 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000718s.
2025-10-09 21:58:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/f727fc1da700d339ff62b229cd3cfe988516e5e7/piesno".
2025-10-09 21:58:56 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:57 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.074379s.
2025-10-09 21:58:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/shells".
2025-10-09 21:58:58 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:58 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000682s.
2025-10-09 21:59:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/piesno".
2025-10-09 21:59:00 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:01 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.034546s.
2025-10-09 21:59:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/shells".
2025-10-09 21:59:02 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:02 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000736s.
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/piesno".
2025-10-09 21:59:04 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:05 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.29048s.
2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/23f949cf11b1ea35b384923daee2210c10364799/shells".
2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000689s.
2025-10-09 21:59:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/23f949cf11b1ea35b384923daee2210c10364799/piesno".
2025-10-09 21:59:08 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:09 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.345459s.
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/pre_n4".
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:01:27 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 137.070038s.
2025-10-09 22:01:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/ds_report_background".
2025-10-09 22:01:28 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:01:28 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.009499s.
2025-10-09 22:01:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/f727fc1da700d339ff62b229cd3cfe988516e5e7/dwi_ref".
2025-10-09 22:01:28 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:28 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.606577s.
2025-10-09 22:01:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/f727fc1da700d339ff62b229cd3cfe988516e5e7/get_lowb".
2025-10-09 22:01:30 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:31 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 1.548477s.
2025-10-09 22:01:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/dwi_ref".
2025-10-09 22:01:32 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:33 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 1.37736s.
2025-10-09 22:01:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/get_lowb".
2025-10-09 22:01:34 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:36 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 1.848939s.
2025-10-09 22:01:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/dwi_ref".
2025-10-09 22:01:36 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:37 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.836487s.
2025-10-09 22:01:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/get_lowb".
2025-10-09 22:01:38 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:38 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.805035s.
2025-10-09 22:01:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/23f949cf11b1ea35b384923daee2210c10364799/dwi_ref".
2025-10-09 22:01:40 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:01:40 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.70195s.
2025-10-09 22:01:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/23f949cf11b1ea35b384923daee2210c10364799/get_lowb".
2025-10-09 22:01:42 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:42 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.439808s.
2025-10-09 22:01:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/synthstrip".
2025-10-09 22:01:44 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:03:26 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 102.333685s.
2025-10-09 22:03:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/pre_clip".
2025-10-09 22:03:28 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:03:28 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.630309s.
2025-10-09 22:03:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f727fc1da700d339ff62b229cd3cfe988516e5e7/SharpenEPI".
2025-10-09 22:03:30 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:03:38 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.968644s.
2025-10-09 22:03:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/f727fc1da700d339ff62b229cd3cfe988516e5e7/hmc_b0".
2025-10-09 22:03:40 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:04:01 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 21.21498s.
2025-10-09 22:04:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/pre_clip".
2025-10-09 22:04:02 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:04:02 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.604046s.
2025-10-09 22:04:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/SharpenEPI".
2025-10-09 22:04:04 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:04:12 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.784975s.
2025-10-09 22:04:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/hmc_b0".
2025-10-09 22:04:12 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:04:33 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 21.356458s.
2025-10-09 22:04:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/pre_clip".
2025-10-09 22:04:34 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:04:34 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.65249s.
2025-10-09 22:04:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/SharpenEPI".
2025-10-09 22:04:36 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:04:44 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 7.847638s.
2025-10-09 22:04:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/hmc_b0".
2025-10-09 22:04:44 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:05:11 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 27.584527s.
2025-10-09 22:05:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/23f949cf11b1ea35b384923daee2210c10364799/pre_clip".
2025-10-09 22:05:12 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:05:12 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.622051s.
2025-10-09 22:05:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/23f949cf11b1ea35b384923daee2210c10364799/SharpenEPI".
2025-10-09 22:05:14 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:22 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.044815s.
2025-10-09 22:05:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/23f949cf11b1ea35b384923daee2210c10364799/hmc_b0".
2025-10-09 22:05:24 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:05:51 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 27.634325s.
2025-10-09 22:05:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/post_n4".
2025-10-09 22:05:52 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:20 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 27.876926s.
2025-10-09 22:06:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/bd5c0f274e6d8cb901383274685da05d19a3e386/smoothness".
2025-10-09 22:06:22 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:06:27 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 5.369273s.
2025-10-09 22:06:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/PlotMosaicZoomed".
2025-10-09 22:06:28 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:06:33 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 5.379801s.
2025-10-09 22:06:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/PlotBrainmask".
2025-10-09 22:06:34 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:06:38 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 4.126857s.
2025-10-09 22:06:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/pre_n4".
2025-10-09 22:06:40 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:48 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.153435s.
2025-10-09 22:06:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/pre_n4".
2025-10-09 22:06:50 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:58 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.140336s.
2025-10-09 22:07:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/pre_n4".
2025-10-09 22:07:00 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:08 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.050704s.
2025-10-09 22:07:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/23f949cf11b1ea35b384923daee2210c10364799/pre_n4".
2025-10-09 22:07:10 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:18 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 8.012856s.
2025-10-09 22:07:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/final_masked".
2025-10-09 22:07:20 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:07:20 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.350604s.
2025-10-09 22:07:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/SpatialNormalization".
2025-10-09 22:07:22 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:07:23 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:08:50 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/SpatialNormalization/stderr.nipype-init).
2025-10-09 22:08:50 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:08:50 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:09:10 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:09:12 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:09:12 | INFO | niworkflows | Generating visual report
2025-10-09 22:09:33 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 131.576934s.
2025-10-09 22:09:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/ds_report_zoomed".
2025-10-09 22:09:34 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:09:34 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.005844s.
2025-10-09 22:09:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/ds_report_bmask".
2025-10-09 22:09:34 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:09:34 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.005429s.
2025-10-09 22:09:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/synthstrip".
2025-10-09 22:09:34 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:10:34 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 59.697743s.
2025-10-09 22:10:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/synthstrip".
2025-10-09 22:10:36 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:11:34 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 57.679018s.
2025-10-09 22:11:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/synthstrip".
2025-10-09 22:11:34 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:12:27 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 53.080837s.
2025-10-09 22:12:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/23f949cf11b1ea35b384923daee2210c10364799/synthstrip".
2025-10-09 22:12:28 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:13:20 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 51.539868s.
2025-10-09 22:13:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/ds_report_norm".
2025-10-09 22:13:20 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:13:20 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005516s.
2025-10-09 22:13:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/post_n4".
2025-10-09 22:13:20 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:23 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.585755s.
2025-10-09 22:13:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/f727fc1da700d339ff62b229cd3cfe988516e5e7/sp_mask".
2025-10-09 22:13:24 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:13:25 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.67768s.
2025-10-09 22:13:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/f727fc1da700d339ff62b229cd3cfe988516e5e7/drift".
2025-10-09 22:13:26 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:13:26 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9982, 0.9967, 1.002, 1.0012, 0.9891, 0.9957.
2025-10-09 22:13:28 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.6787809999999999s.
2025-10-09 22:13:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f727fc1da700d339ff62b229cd3cfe988516e5e7/EPI2MNI".
2025-10-09 22:13:28 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:13:28 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:14:03 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:14:03 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f727fc1da700d339ff62b229cd3cfe988516e5e7/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f727fc1da700d339ff62b229cd3cfe988516e5e7/SharpenEPI/sub-cIVs028_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f727fc1da700d339ff62b229cd3cfe988516e5e7/SharpenEPI/sub-cIVs028_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f727fc1da700d339ff62b229cd3cfe988516e5e7/SharpenEPI/sub-cIVs028_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:15:17 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:15:17 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f727fc1da700d339ff62b229cd3cfe988516e5e7/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:15:17 | INFO | niworkflows | Generating visual report
2025-10-09 22:15:36 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 127.397932s.
2025-10-09 22:15:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/post_n4".
2025-10-09 22:15:36 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:39 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.529709s.
2025-10-09 22:15:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/sp_mask".
2025-10-09 22:15:40 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:15:41 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.633389s.
2025-10-09 22:15:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/drift".
2025-10-09 22:15:42 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:15:42 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9946, 0.9987, 0.999, 1.0023, 0.9977, 0.9955.
2025-10-09 22:15:44 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.645439s.
2025-10-09 22:15:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/EPI2MNI".
2025-10-09 22:15:44 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:15:44 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:16:17 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/EPI2MNI/stderr.nipype-init).
2025-10-09 22:16:17 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:16:17 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/SharpenEPI/sub-cIVs028_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/SharpenEPI/sub-cIVs028_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/SharpenEPI/sub-cIVs028_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:17:32 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:17:32 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:17:32 | INFO | niworkflows | Generating visual report
2025-10-09 22:17:51 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 126.427185s.
2025-10-09 22:17:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/post_n4".
2025-10-09 22:17:52 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:17:55 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.52602s.
2025-10-09 22:17:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/sp_mask".
2025-10-09 22:17:56 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:17:57 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.951805s.
2025-10-09 22:17:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/drift".
2025-10-09 22:17:58 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:17:59 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 1.0013, 0.9964, 1.0044, 1.0042, 1.0001, 1.0008, 0.9987, 0.9939.
2025-10-09 22:18:00 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.023877s.
2025-10-09 22:18:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/EPI2MNI".
2025-10-09 22:18:02 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:18:02 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:18:37 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:18:37 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/SharpenEPI/sub-cIVs028_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/SharpenEPI/sub-cIVs028_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/SharpenEPI/sub-cIVs028_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:19:55 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:19:55 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:19:55 | INFO | niworkflows | Generating visual report
2025-10-09 22:20:15 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 132.496581s.
2025-10-09 22:20:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/23f949cf11b1ea35b384923daee2210c10364799/post_n4".
2025-10-09 22:20:16 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:20:19 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.619344s.
2025-10-09 22:20:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/23f949cf11b1ea35b384923daee2210c10364799/sp_mask".
2025-10-09 22:20:20 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:20:21 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 1.000573s.
2025-10-09 22:20:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/23f949cf11b1ea35b384923daee2210c10364799/drift".
2025-10-09 22:20:22 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:20:23 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9985, 0.9997, 1.01, 1.0007, 0.9989, 0.9988, 1.0, 0.999.
2025-10-09 22:20:25 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.127095s.
2025-10-09 22:20:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/23f949cf11b1ea35b384923daee2210c10364799/EPI2MNI".
2025-10-09 22:20:26 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:20:26 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:21:02 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/23f949cf11b1ea35b384923daee2210c10364799/EPI2MNI/stderr.nipype-init).
2025-10-09 22:21:02 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:21:02 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/23f949cf11b1ea35b384923daee2210c10364799/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/23f949cf11b1ea35b384923daee2210c10364799/SharpenEPI/sub-cIVs028_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/23f949cf11b1ea35b384923daee2210c10364799/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/23f949cf11b1ea35b384923daee2210c10364799/SharpenEPI/sub-cIVs028_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/23f949cf11b1ea35b384923daee2210c10364799/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/23f949cf11b1ea35b384923daee2210c10364799/SharpenEPI/sub-cIVs028_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/23f949cf11b1ea35b384923daee2210c10364799/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:22:18 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:22:18 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/23f949cf11b1ea35b384923daee2210c10364799/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:22:18 | INFO | niworkflows | Generating visual report
2025-10-09 22:22:37 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 130.734675s.
2025-10-09 22:22:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/final_masked".
2025-10-09 22:22:39 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:22:39 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.04221s.
2025-10-09 22:22:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/f727fc1da700d339ff62b229cd3cfe988516e5e7/dwidenoise".
2025-10-09 22:22:41 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:23:03 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 22.860203s.
2025-10-09 22:23:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f727fc1da700d339ff62b229cd3cfe988516e5e7/ResampleSegmentation".
2025-10-09 22:23:05 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:23:08 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.94592s.
2025-10-09 22:23:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/final_masked".
2025-10-09 22:23:11 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:23:11 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.038034s.
2025-10-09 22:23:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/dwidenoise".
2025-10-09 22:23:13 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:23:35 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 22.573525s.
2025-10-09 22:23:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/ResampleSegmentation".
2025-10-09 22:23:37 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:23:41 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.9506449999999997s.
2025-10-09 22:23:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/final_masked".
2025-10-09 22:23:43 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:23:43 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.041891s.
2025-10-09 22:23:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/dwidenoise".
2025-10-09 22:23:45 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:24:24 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 39.681384s.
2025-10-09 22:24:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/ResampleSegmentation".
2025-10-09 22:24:25 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:24:28 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.920355s.
2025-10-09 22:24:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/23f949cf11b1ea35b384923daee2210c10364799/final_masked".
2025-10-09 22:24:31 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:24:31 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.037848s.
2025-10-09 22:24:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/23f949cf11b1ea35b384923daee2210c10364799/dwidenoise".
2025-10-09 22:24:33 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:25:12 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 39.448398s.
2025-10-09 22:25:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/23f949cf11b1ea35b384923daee2210c10364799/ResampleSegmentation".
2025-10-09 22:25:13 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:25:16 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.650324s.
2025-10-09 22:25:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/f727fc1da700d339ff62b229cd3cfe988516e5e7/dwimodel".
2025-10-09 22:25:17 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:25:21 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.068155s.
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/f727fc1da700d339ff62b229cd3cfe988516e5e7/estimate_sigma".
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:25:23 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.059603s.
2025-10-09 22:25:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/get_wm".
2025-10-09 22:25:25 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:25:25 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.041432s.
2025-10-09 22:25:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/dwimodel".
2025-10-09 22:25:27 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:25:31 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.033733s.
2025-10-09 22:25:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/estimate_sigma".
2025-10-09 22:25:33 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:25:33 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.04257s.
2025-10-09 22:25:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/get_wm".
2025-10-09 22:25:35 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:25:35 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.039639s.
2025-10-09 22:25:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/dwimodel".
2025-10-09 22:25:37 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:25:41 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.533772s.
2025-10-09 22:25:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/estimate_sigma".
2025-10-09 22:25:43 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:25:43 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.043764s.
2025-10-09 22:25:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/get_wm".
2025-10-09 22:25:45 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:25:45 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.071085s.
2025-10-09 22:25:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/23f949cf11b1ea35b384923daee2210c10364799/dwimodel".
2025-10-09 22:25:47 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:25:51 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.623273s.
2025-10-09 22:25:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/23f949cf11b1ea35b384923daee2210c10364799/estimate_sigma".
2025-10-09 22:25:53 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:25:53 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.044237s.
2025-10-09 22:25:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/23f949cf11b1ea35b384923daee2210c10364799/get_wm".
2025-10-09 22:25:55 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:25:55 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.04123s.
2025-10-09 22:25:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/f727fc1da700d339ff62b229cd3cfe988516e5e7/cc_mask".
2025-10-09 22:25:57 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:25:57 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.598281s.
2025-10-09 22:25:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/mosaic_fa".
2025-10-09 22:25:59 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:26:00 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.6512799999999999s.
2025-10-09 22:26:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/mosaic_md".
2025-10-09 22:26:01 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:26:03 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.974021s.
2025-10-09 22:26:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/plot_heatmap".
2025-10-09 22:26:05 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:26:06 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.372892s.
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/cc_mask".
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:26:07 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.643627s.
2025-10-09 22:26:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/mosaic_fa".
2025-10-09 22:26:09 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:26:10 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.8064390000000001s.
2025-10-09 22:26:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/mosaic_md".
2025-10-09 22:26:11 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:26:13 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 2.315873s.
2025-10-09 22:26:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/plot_heatmap".
2025-10-09 22:26:15 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:26:16 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.311652s.
2025-10-09 22:26:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/cc_mask".
2025-10-09 22:26:17 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:26:17 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.550542s.
2025-10-09 22:26:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/mosaic_fa".
2025-10-09 22:26:19 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:26:20 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.804455s.
2025-10-09 22:26:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/mosaic_md".
2025-10-09 22:26:21 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:26:23 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.954413s.
2025-10-09 22:26:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/plot_heatmap".
2025-10-09 22:26:25 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:26:26 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.428291s.
2025-10-09 22:26:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/23f949cf11b1ea35b384923daee2210c10364799/cc_mask".
2025-10-09 22:26:27 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:26:27 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.609364s.
2025-10-09 22:26:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/23f949cf11b1ea35b384923daee2210c10364799/mosaic_fa".
2025-10-09 22:26:29 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:26:30 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.863346s.
2025-10-09 22:26:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/23f949cf11b1ea35b384923daee2210c10364799/mosaic_md".
2025-10-09 22:26:31 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:26:33 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.938087s.
2025-10-09 22:26:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/23f949cf11b1ea35b384923daee2210c10364799/plot_heatmap".
2025-10-09 22:26:35 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:26:36 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.346498s.
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/ds_report_fa".
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005449s.
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/ds_report_md".
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005336s.
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f727fc1da700d339ff62b229cd3cfe988516e5e7/ds_report_hm".
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005349s.
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/ds_report_fa".
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005724s.
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/ds_report_md".
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005785s.
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ef5cc971cf340ff0adf013f46375fc6f8668c3d8/ds_report_hm".
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.00566s.
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/ds_report_fa".
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:37 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005478s.
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/ds_report_md".
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.005192s.
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/8a2f6513dca3a5d81962449ae5d1b919a5a745e4/ds_report_hm".
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005521s.
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/23f949cf11b1ea35b384923daee2210c10364799/ds_report_fa".
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.005232s.
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/23f949cf11b1ea35b384923daee2210c10364799/ds_report_md".
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.00537s.
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/23f949cf11b1ea35b384923daee2210c10364799/ds_report_hm".
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.005197s.
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:26:38 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:26:48 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 9.831682s.
2025-10-09 22:26:49 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:26:49 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:26:58 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 9.832903s.
2025-10-09 22:26:59 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:26:59 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:27:08 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 9.856705s.
2025-10-09 22:27:11 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:27:11 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:27:11 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:27:11 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:27:11 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:27:11 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:27:11 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/bd5c0f274e6d8cb901383274685da05d19a3e386/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:27:11 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:27:11 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:27:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/bd5c0f274e6d8cb901383274685da05d19a3e386/Enhance".
2025-10-09 22:27:13 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:27:13 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.625136s.
2025-10-09 22:27:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/bd5c0f274e6d8cb901383274685da05d19a3e386/format_tpm_names".
2025-10-09 22:27:15 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:27:17 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 2.0477629999999998s.
2025-10-09 22:27:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/bd5c0f274e6d8cb901383274685da05d19a3e386/Grad".
2025-10-09 22:27:19 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:27:26 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 7.513411s.
2025-10-09 22:27:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/bd5c0f274e6d8cb901383274685da05d19a3e386/apply_mask".
2025-10-09 22:27:27 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:27:27 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.317365s.
2025-10-09 22:27:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/bd5c0f274e6d8cb901383274685da05d19a3e386/GradientThreshold".
2025-10-09 22:27:29 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:27:46 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 17.152698s.
2025-10-09 22:27:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/bd5c0f274e6d8cb901383274685da05d19a3e386/segmentation".
2025-10-09 22:27:47 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:29:29 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 102.038231s.
2025-10-09 22:29:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/bd5c0f274e6d8cb901383274685da05d19a3e386/ArtifactMask".
2025-10-09 22:29:31 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:29:37 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 6.784699s.
2025-10-09 22:29:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/PlotHeadmask".
2025-10-09 22:29:39 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:29:42 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 3.470207s.
2025-10-09 22:29:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/bd5c0f274e6d8cb901383274685da05d19a3e386/harmonize".
2025-10-09 22:29:43 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:29:44 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 1.194607s.
2025-10-09 22:29:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/bd5c0f274e6d8cb901383274685da05d19a3e386/PlotSegmentation".
2025-10-09 22:29:45 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:29:48 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 3.8538170000000003s.
2025-10-09 22:29:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/bd5c0f274e6d8cb901383274685da05d19a3e386/provenance".
2025-10-09 22:29:51 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:29:51 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.067063s.
2025-10-09 22:29:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/bd5c0f274e6d8cb901383274685da05d19a3e386/ComputeQI2".
2025-10-09 22:29:51 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:29:51 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.280599s.
2025-10-09 22:29:51 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:29:51 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/bd5c0f274e6d8cb901383274685da05d19a3e386/ComputeQI2)
2025-10-09 22:29:51 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=127) crashed: /var/lib/condor/execute/dir_3950095/ds/logs/crash-20251009-222951-fhoffstaedter-ComputeQI2.a0-5befaa62-7a63-4909-9760-4b9a0776af84.txt
get(ok): sourcedata/raw/sub-cIVs028/ses-s1Bx1/anat/sub-cIVs028_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs028/ses-s1Bx1/dwi/sub-cIVs028_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs028/ses-s1Bx1/dwi/sub-cIVs028_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs028/ses-s1Bx1/dwi/sub-cIVs028_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-114_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs028/ses-s1Bx1/dwi/sub-cIVs028_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs028/ses-s1Bx1/dwi/sub-cIVs028_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs028/ses-s1Bx1/dwi/sub-cIVs028_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs028 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_3950095/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 9)
run (error: 1)
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