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ds003416-mriqc/logs/sub-cIVs025_10066455.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

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install(ok): /var/lib/condor/execute/dir_3950045/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3950045/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3950045/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_3950045/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:57:20 | IMPORTANT | mriqc | Extracting metadata and entities for 2 input runs of modality 't1w'...
2025-10-09 21:57:20 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:57:20 | IMPORTANT | mriqc | Extracting metadata and entities for 12 input runs of modality 'dwi'...
2025-10-09 21:57:20 | WARNING | nipype.workflow | 4 cannot be processed (too short or too long)
2025-10-09 21:57:20 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:57:20 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215718_d0651ed9-2c37-44e0-8da9-4754ef7422ae.toml.
2025-10-09 21:57:25 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:57:26 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:57:26 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 8 NIfTI files..
2025-10-09 21:57:27 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 2 NIfTI files..
2025-10-09 21:57:32 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:57:36 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/conform".
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:57:37 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.296599s.
2025-10-09 21:57:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/e3164ef3975501add01257804076e58c5c371cc4/conform".
2025-10-09 21:57:39 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:57:39 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.707306s.
2025-10-09 21:57:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/provenance".
2025-10-09 21:57:41 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:41 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.023741s.
2025-10-09 21:57:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/sanitize".
2025-10-09 21:57:41 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:42 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.827813s.
2025-10-09 21:57:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/load_bmat".
2025-10-09 21:57:43 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:43 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.221381s.
2025-10-09 21:57:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/eb8881c8a76261dc336947f2545fdc2d9039b11d/provenance".
2025-10-09 21:57:45 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:45 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.024061s.
2025-10-09 21:57:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/eb8881c8a76261dc336947f2545fdc2d9039b11d/sanitize".
2025-10-09 21:57:45 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:46 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.806382s.
2025-10-09 21:57:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/eb8881c8a76261dc336947f2545fdc2d9039b11d/load_bmat".
2025-10-09 21:57:47 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:47 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024403s.
2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/provenance".
2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.036812s.
2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/sanitize".
2025-10-09 21:57:49 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:50 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.181126s.
2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/load_bmat".
2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:51 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.025736s.
2025-10-09 21:57:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/provenance".
2025-10-09 21:57:53 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:53 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.035961s.
2025-10-09 21:57:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/sanitize".
2025-10-09 21:57:53 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:54 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.098285s.
2025-10-09 21:57:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/load_bmat".
2025-10-09 21:57:55 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:55 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.024096s.
2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/85c00d77896b33697de9dbd8b443578de7907abf/provenance".
2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.023168s.
2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/85c00d77896b33697de9dbd8b443578de7907abf/sanitize".
2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:58 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.821784s.
2025-10-09 21:57:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/85c00d77896b33697de9dbd8b443578de7907abf/load_bmat".
2025-10-09 21:57:59 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:59 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.025068s.
2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/7152569b34257001db8f2c5f921c35b2de8a3636/provenance".
2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.023602s.
2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/7152569b34257001db8f2c5f921c35b2de8a3636/sanitize".
2025-10-09 21:58:01 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:02 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.831676s.
2025-10-09 21:58:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/7152569b34257001db8f2c5f921c35b2de8a3636/load_bmat".
2025-10-09 21:58:03 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:03 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.025103s.
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/da27b3d3084a17262fc98d1b2625c2237b91f209/provenance".
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.03036s.
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/da27b3d3084a17262fc98d1b2625c2237b91f209/sanitize".
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.092773s.
2025-10-09 21:58:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/da27b3d3084a17262fc98d1b2625c2237b91f209/load_bmat".
2025-10-09 21:58:07 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:07 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.042441s.
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/provenance".
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.031633s.
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/sanitize".
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 1.082749s.
2025-10-09 21:58:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/load_bmat".
2025-10-09 21:58:11 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:11 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.025596s.
2025-10-09 21:58:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/pre_clip".
2025-10-09 21:58:13 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 10.851241s.
2025-10-09 21:58:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/RotationMask".
2025-10-09 21:58:25 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.885725s.
2025-10-09 21:58:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/PlotMosaicNoise".
2025-10-09 21:58:27 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.440332s.
2025-10-09 21:58:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/e3164ef3975501add01257804076e58c5c371cc4/pre_clip".
2025-10-09 21:58:33 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:58:44 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 11.591659s.
2025-10-09 21:58:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/e3164ef3975501add01257804076e58c5c371cc4/RotationMask".
2025-10-09 21:58:45 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:58:46 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.926412s.
2025-10-09 21:58:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/e3164ef3975501add01257804076e58c5c371cc4/PlotMosaicNoise".
2025-10-09 21:58:47 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:58:52 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 5.654372s.
2025-10-09 21:58:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/piesno".
2025-10-09 21:58:53 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:54 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.105613s.
2025-10-09 21:58:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/shells".
2025-10-09 21:58:55 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:55 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000767s.
2025-10-09 21:58:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/eb8881c8a76261dc336947f2545fdc2d9039b11d/piesno".
2025-10-09 21:58:57 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:58 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.110525s.
2025-10-09 21:58:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/eb8881c8a76261dc336947f2545fdc2d9039b11d/shells".
2025-10-09 21:58:59 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:59 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000841s.
2025-10-09 21:59:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/piesno".
2025-10-09 21:59:01 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:02 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.248682s.
2025-10-09 21:59:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/shells".
2025-10-09 21:59:03 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:03 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000731s.
2025-10-09 21:59:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/piesno".
2025-10-09 21:59:05 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:06 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.225612s.
2025-10-09 21:59:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/shells".
2025-10-09 21:59:07 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:07 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000744s.
2025-10-09 21:59:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/85c00d77896b33697de9dbd8b443578de7907abf/piesno".
2025-10-09 21:59:09 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:10 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.992327s.
2025-10-09 21:59:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/85c00d77896b33697de9dbd8b443578de7907abf/shells".
2025-10-09 21:59:11 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:11 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.00067s.
2025-10-09 21:59:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/7152569b34257001db8f2c5f921c35b2de8a3636/piesno".
2025-10-09 21:59:13 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:14 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.52207s.
2025-10-09 21:59:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/7152569b34257001db8f2c5f921c35b2de8a3636/shells".
2025-10-09 21:59:15 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:15 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000756s.
2025-10-09 21:59:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/da27b3d3084a17262fc98d1b2625c2237b91f209/piesno".
2025-10-09 21:59:17 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:18 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.277901s.
2025-10-09 21:59:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/da27b3d3084a17262fc98d1b2625c2237b91f209/shells".
2025-10-09 21:59:19 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:19 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.001204s.
2025-10-09 21:59:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/piesno".
2025-10-09 21:59:21 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:59:22 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.226427s.
2025-10-09 21:59:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/shells".
2025-10-09 21:59:23 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:59:23 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.00088s.
2025-10-09 21:59:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/pre_n4".
2025-10-09 21:59:25 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:01:43 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 137.960394s.
2025-10-09 22:01:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/ds_report_background".
2025-10-09 22:01:45 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:01:45 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.010491s.
2025-10-09 22:01:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/e3164ef3975501add01257804076e58c5c371cc4/pre_n4".
2025-10-09 22:01:45 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:04:07 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 141.818173s.
2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/e3164ef3975501add01257804076e58c5c371cc4/ds_report_background".
2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.005181s.
2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/dwi_ref".
2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:10 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.57891s.
2025-10-09 22:04:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/get_lowb".
2025-10-09 22:04:11 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:04:11 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.349077s.
2025-10-09 22:04:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/eb8881c8a76261dc336947f2545fdc2d9039b11d/dwi_ref".
2025-10-09 22:04:13 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:13 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.53286s.
2025-10-09 22:04:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/eb8881c8a76261dc336947f2545fdc2d9039b11d/get_lowb".
2025-10-09 22:04:15 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:04:15 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.362067s.
2025-10-09 22:04:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/dwi_ref".
2025-10-09 22:04:17 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:18 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.712723s.
2025-10-09 22:04:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/get_lowb".
2025-10-09 22:04:19 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:04:19 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.49885s.
2025-10-09 22:04:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/dwi_ref".
2025-10-09 22:04:21 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:22 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.733599s.
2025-10-09 22:04:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/get_lowb".
2025-10-09 22:04:23 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:04:23 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.519114s.
2025-10-09 22:04:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/85c00d77896b33697de9dbd8b443578de7907abf/dwi_ref".
2025-10-09 22:04:25 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:25 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.585369s.
2025-10-09 22:04:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/85c00d77896b33697de9dbd8b443578de7907abf/get_lowb".
2025-10-09 22:04:27 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:04:27 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.383821s.
2025-10-09 22:04:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/7152569b34257001db8f2c5f921c35b2de8a3636/dwi_ref".
2025-10-09 22:04:29 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:29 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.593292s.
2025-10-09 22:04:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/7152569b34257001db8f2c5f921c35b2de8a3636/get_lowb".
2025-10-09 22:04:31 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:04:31 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.357482s.
2025-10-09 22:04:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/da27b3d3084a17262fc98d1b2625c2237b91f209/dwi_ref".
2025-10-09 22:04:33 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:34 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.696231s.
2025-10-09 22:04:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/da27b3d3084a17262fc98d1b2625c2237b91f209/get_lowb".
2025-10-09 22:04:35 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:04:35 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.445687s.
2025-10-09 22:04:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/dwi_ref".
2025-10-09 22:04:37 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:04:37 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.684274s.
2025-10-09 22:04:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/get_lowb".
2025-10-09 22:04:39 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:04:39 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.445097s.
2025-10-09 22:04:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/synthstrip".
2025-10-09 22:04:41 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:06:14 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 93.648174s.
2025-10-09 22:06:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/e3164ef3975501add01257804076e58c5c371cc4/synthstrip".
2025-10-09 22:06:15 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:07:47 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 92.003745s.
2025-10-09 22:07:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/pre_clip".
2025-10-09 22:07:49 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:50 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.7235s.
2025-10-09 22:07:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/SharpenEPI".
2025-10-09 22:07:51 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:59 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.189815s.
2025-10-09 22:08:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/hmc_b0".
2025-10-09 22:08:01 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:24 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 22.5825s.
2025-10-09 22:08:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/pre_clip".
2025-10-09 22:08:25 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:26 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.74064s.
2025-10-09 22:08:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/eb8881c8a76261dc336947f2545fdc2d9039b11d/SharpenEPI".
2025-10-09 22:08:27 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:35 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.224682s.
2025-10-09 22:08:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/eb8881c8a76261dc336947f2545fdc2d9039b11d/hmc_b0".
2025-10-09 22:08:37 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:00 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 23.338798s.
2025-10-09 22:09:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/pre_clip".
2025-10-09 22:09:01 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:09:02 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.680018s.
2025-10-09 22:09:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/SharpenEPI".
2025-10-09 22:09:03 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:11 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.392154s.
2025-10-09 22:09:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/hmc_b0".
2025-10-09 22:09:13 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:09:43 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 29.93234s.
2025-10-09 22:09:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/pre_clip".
2025-10-09 22:09:45 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:09:46 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.732746s.
2025-10-09 22:09:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/SharpenEPI".
2025-10-09 22:09:47 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:56 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.562394s.
2025-10-09 22:09:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/hmc_b0".
2025-10-09 22:09:57 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:10:28 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 31.399218s.
2025-10-09 22:10:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/85c00d77896b33697de9dbd8b443578de7907abf/pre_clip".
2025-10-09 22:10:29 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:10:30 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.767245s.
2025-10-09 22:10:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/85c00d77896b33697de9dbd8b443578de7907abf/SharpenEPI".
2025-10-09 22:10:31 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:40 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.669736s.
2025-10-09 22:10:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/85c00d77896b33697de9dbd8b443578de7907abf/hmc_b0".
2025-10-09 22:10:41 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:11:05 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 23.703796s.
2025-10-09 22:11:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7152569b34257001db8f2c5f921c35b2de8a3636/pre_clip".
2025-10-09 22:11:05 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:11:06 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.759645s.
2025-10-09 22:11:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7152569b34257001db8f2c5f921c35b2de8a3636/SharpenEPI".
2025-10-09 22:11:07 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:16 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.679043s.
2025-10-09 22:11:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/7152569b34257001db8f2c5f921c35b2de8a3636/hmc_b0".
2025-10-09 22:11:17 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:11:41 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 23.905113s.
2025-10-09 22:11:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/pre_clip".
2025-10-09 22:11:43 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:11:44 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.711781s.
2025-10-09 22:11:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/da27b3d3084a17262fc98d1b2625c2237b91f209/SharpenEPI".
2025-10-09 22:11:45 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:53 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.291087s.
2025-10-09 22:11:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/da27b3d3084a17262fc98d1b2625c2237b91f209/hmc_b0".
2025-10-09 22:11:55 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:12:25 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 29.64087s.
2025-10-09 22:12:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/pre_clip".
2025-10-09 22:12:25 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:12:26 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.782459s.
2025-10-09 22:12:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/SharpenEPI".
2025-10-09 22:12:27 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:35 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 8.335674s.
2025-10-09 22:12:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/hmc_b0".
2025-10-09 22:12:37 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:13:06 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 28.458931s.
2025-10-09 22:13:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/post_n4".
2025-10-09 22:13:07 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:13:37 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 29.919759s.
2025-10-09 22:13:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/smoothness".
2025-10-09 22:13:39 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:13:45 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 5.964707s.
2025-10-09 22:13:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/PlotMosaicZoomed".
2025-10-09 22:13:47 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:13:53 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 5.559096s.
2025-10-09 22:13:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/PlotBrainmask".
2025-10-09 22:13:53 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:13:57 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 4.244268s.
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/e3164ef3975501add01257804076e58c5c371cc4/post_n4".
2025-10-09 22:13:59 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:14:28 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 29.141378s.
2025-10-09 22:14:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/e3164ef3975501add01257804076e58c5c371cc4/smoothness".
2025-10-09 22:14:29 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:14:35 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 5.476777s.
2025-10-09 22:14:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/e3164ef3975501add01257804076e58c5c371cc4/PlotMosaicZoomed".
2025-10-09 22:14:35 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:14:41 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 5.376931s.
2025-10-09 22:14:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/e3164ef3975501add01257804076e58c5c371cc4/PlotBrainmask".
2025-10-09 22:14:41 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:14:45 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.941246s.
2025-10-09 22:14:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/pre_n4".
2025-10-09 22:14:47 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:14:55 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.917999s.
2025-10-09 22:14:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/pre_n4".
2025-10-09 22:14:57 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:05 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.838899s.
2025-10-09 22:15:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/pre_n4".
2025-10-09 22:15:05 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:13 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.9643239999999995s.
2025-10-09 22:15:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/pre_n4".
2025-10-09 22:15:15 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:23 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.877347s.
2025-10-09 22:15:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/85c00d77896b33697de9dbd8b443578de7907abf/pre_n4".
2025-10-09 22:15:23 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:31 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.799236s.
2025-10-09 22:15:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7152569b34257001db8f2c5f921c35b2de8a3636/pre_n4".
2025-10-09 22:15:31 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:39 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.770467s.
2025-10-09 22:15:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/pre_n4".
2025-10-09 22:15:39 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:47 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.861968s.
2025-10-09 22:15:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/pre_n4".
2025-10-09 22:15:49 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:15:57 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 7.890872s.
2025-10-09 22:15:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/final_masked".
2025-10-09 22:15:59 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:16:00 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.338027s.
2025-10-09 22:16:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/SpatialNormalization".
2025-10-09 22:16:01 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:16:02 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:17:21 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:17:21 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:17:38 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:17:40 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:17:40 | INFO | niworkflows | Generating visual report
2025-10-09 22:17:59 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 118.139824s.
2025-10-09 22:18:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/ds_report_zoomed".
2025-10-09 22:18:01 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:18:01 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.005397s.
2025-10-09 22:18:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/ds_report_bmask".
2025-10-09 22:18:01 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:18:01 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.005039s.
2025-10-09 22:18:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/e3164ef3975501add01257804076e58c5c371cc4/final_masked".
2025-10-09 22:18:02 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:18:02 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.334641s.
2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/e3164ef3975501add01257804076e58c5c371cc4/SpatialNormalization".
2025-10-09 22:18:03 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:18:04 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:19:26 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/e3164ef3975501add01257804076e58c5c371cc4/SpatialNormalization/stderr.nipype-init).
2025-10-09 22:19:26 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:19:26 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/e3164ef3975501add01257804076e58c5c371cc4/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/e3164ef3975501add01257804076e58c5c371cc4/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/e3164ef3975501add01257804076e58c5c371cc4/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/e3164ef3975501add01257804076e58c5c371cc4/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/e3164ef3975501add01257804076e58c5c371cc4/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:19:44 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:19:46 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/e3164ef3975501add01257804076e58c5c371cc4/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/e3164ef3975501add01257804076e58c5c371cc4/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:19:46 | INFO | niworkflows | Generating visual report
2025-10-09 22:20:05 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 122.199913s.
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/e3164ef3975501add01257804076e58c5c371cc4/ds_report_zoomed".
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.005449s.
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/e3164ef3975501add01257804076e58c5c371cc4/ds_report_bmask".
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.005205s.
2025-10-09 22:20:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/synthstrip".
2025-10-09 22:20:08 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:20:53 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 45.154957s.
2025-10-09 22:20:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/synthstrip".
2025-10-09 22:20:54 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:21:39 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 45.445872s.
2025-10-09 22:21:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/synthstrip".
2025-10-09 22:21:40 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:22:25 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 45.569773s.
2025-10-09 22:22:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/synthstrip".
2025-10-09 22:22:26 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:23:11 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 45.526322s.
2025-10-09 22:23:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/85c00d77896b33697de9dbd8b443578de7907abf/synthstrip".
2025-10-09 22:23:12 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:23:57 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 45.066099s.
2025-10-09 22:23:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7152569b34257001db8f2c5f921c35b2de8a3636/synthstrip".
2025-10-09 22:23:58 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:24:42 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 44.531216s.
2025-10-09 22:24:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/synthstrip".
2025-10-09 22:24:44 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:25:28 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 44.201097s.
2025-10-09 22:25:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/synthstrip".
2025-10-09 22:25:30 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:26:14 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 44.820672s.
2025-10-09 22:26:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/ds_report_norm".
2025-10-09 22:26:16 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:16 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005667s.
2025-10-09 22:26:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/e3164ef3975501add01257804076e58c5c371cc4/ds_report_norm".
2025-10-09 22:26:16 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:26:16 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005428s.
2025-10-09 22:26:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/post_n4".
2025-10-09 22:26:16 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:26:19 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.663765s.
2025-10-09 22:26:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/sp_mask".
2025-10-09 22:26:20 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:26:20 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.748676s.
2025-10-09 22:26:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/drift".
2025-10-09 22:26:22 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:26:22 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0028, 0.9983, 1.0018, 1.0017, 1.0014, 0.9992.
2025-10-09 22:26:23 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.77683s.
2025-10-09 22:26:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/EPI2MNI".
2025-10-09 22:26:24 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:26:24 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:26:58 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:26:58 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/SharpenEPI/sub-cIVs025_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/SharpenEPI/sub-cIVs025_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/SharpenEPI/sub-cIVs025_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:28:19 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:28:19 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:28:19 | INFO | niworkflows | Generating visual report
2025-10-09 22:28:39 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 135.756093s.
2025-10-09 22:28:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/post_n4".
2025-10-09 22:28:40 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:28:43 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.7378270000000002s.
2025-10-09 22:28:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/eb8881c8a76261dc336947f2545fdc2d9039b11d/sp_mask".
2025-10-09 22:28:44 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:28:45 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.769161s.
2025-10-09 22:28:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/eb8881c8a76261dc336947f2545fdc2d9039b11d/drift".
2025-10-09 22:28:46 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:28:46 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0091, 1.004, 1.0106, 1.0071, 1.0086, 0.9496.
2025-10-09 22:28:47 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.7079849999999999s.
2025-10-09 22:28:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/eb8881c8a76261dc336947f2545fdc2d9039b11d/EPI2MNI".
2025-10-09 22:28:48 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:28:48 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:29:21 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:29:21 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/eb8881c8a76261dc336947f2545fdc2d9039b11d/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/eb8881c8a76261dc336947f2545fdc2d9039b11d/SharpenEPI/sub-cIVs025_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/eb8881c8a76261dc336947f2545fdc2d9039b11d/SharpenEPI/sub-cIVs025_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/eb8881c8a76261dc336947f2545fdc2d9039b11d/SharpenEPI/sub-cIVs025_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:30:37 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:30:37 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/eb8881c8a76261dc336947f2545fdc2d9039b11d/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:30:37 | INFO | niworkflows | Generating visual report
2025-10-09 22:30:57 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 129.207044s.
2025-10-09 22:30:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/post_n4".
2025-10-09 22:30:58 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:31:00 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.6743740000000003s.
2025-10-09 22:31:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/sp_mask".
2025-10-09 22:31:02 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:31:03 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.978037s.
2025-10-09 22:31:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/drift".
2025-10-09 22:31:04 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:31:04 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9989, 0.9702, 1.0058, 1.0026, 1.0002, 1.0035, 1.003, 0.9942.
2025-10-09 22:31:06 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.141593s.
2025-10-09 22:31:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/EPI2MNI".
2025-10-09 22:31:08 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:31:08 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:31:42 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:31:42 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/SharpenEPI/sub-cIVs025_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/SharpenEPI/sub-cIVs025_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/SharpenEPI/sub-cIVs025_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:32:55 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:32:55 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:32:55 | INFO | niworkflows | Generating visual report
2025-10-09 22:33:13 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 125.63700299999999s.
2025-10-09 22:33:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/post_n4".
2025-10-09 22:33:14 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:33:17 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.708315s.
2025-10-09 22:33:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/sp_mask".
2025-10-09 22:33:18 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:33:19 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 1.026514s.
2025-10-09 22:33:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/drift".
2025-10-09 22:33:20 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:33:20 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9096, 0.9933, 1.0039, 1.0018, 1.0028, 1.0006, 1.0048, 0.9944.
2025-10-09 22:33:22 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.179688s.
2025-10-09 22:33:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/EPI2MNI".
2025-10-09 22:33:24 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:33:24 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:33:57 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:33:57 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/SharpenEPI/sub-cIVs025_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/SharpenEPI/sub-cIVs025_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/SharpenEPI/sub-cIVs025_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:35:11 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:35:11 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:35:11 | INFO | niworkflows | Generating visual report
2025-10-09 22:35:30 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 125.855206s.
2025-10-09 22:35:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/85c00d77896b33697de9dbd8b443578de7907abf/post_n4".
2025-10-09 22:35:30 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:35:33 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.6358930000000003s.
2025-10-09 22:35:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/85c00d77896b33697de9dbd8b443578de7907abf/sp_mask".
2025-10-09 22:35:34 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:35:35 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.678805s.
2025-10-09 22:35:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/85c00d77896b33697de9dbd8b443578de7907abf/drift".
2025-10-09 22:35:36 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:35:36 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9943, 1.0009, 1.0026, 1.0005, 0.9978, 0.9965.
2025-10-09 22:35:38 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.6346509999999999s.
2025-10-09 22:35:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/85c00d77896b33697de9dbd8b443578de7907abf/EPI2MNI".
2025-10-09 22:35:38 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:35:38 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:36:12 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/85c00d77896b33697de9dbd8b443578de7907abf/EPI2MNI/stderr.nipype-init).
2025-10-09 22:36:12 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:36:12 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/85c00d77896b33697de9dbd8b443578de7907abf/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/85c00d77896b33697de9dbd8b443578de7907abf/SharpenEPI/sub-cIVs025_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/85c00d77896b33697de9dbd8b443578de7907abf/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/85c00d77896b33697de9dbd8b443578de7907abf/SharpenEPI/sub-cIVs025_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/85c00d77896b33697de9dbd8b443578de7907abf/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/85c00d77896b33697de9dbd8b443578de7907abf/SharpenEPI/sub-cIVs025_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/85c00d77896b33697de9dbd8b443578de7907abf/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:37:26 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:37:26 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/85c00d77896b33697de9dbd8b443578de7907abf/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:37:26 | INFO | niworkflows | Generating visual report
2025-10-09 22:37:45 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 127.02389s.
2025-10-09 22:37:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7152569b34257001db8f2c5f921c35b2de8a3636/post_n4".
2025-10-09 22:37:46 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:37:49 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.686482s.
2025-10-09 22:37:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/7152569b34257001db8f2c5f921c35b2de8a3636/sp_mask".
2025-10-09 22:37:50 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:37:51 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.690772s.
2025-10-09 22:37:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/7152569b34257001db8f2c5f921c35b2de8a3636/drift".
2025-10-09 22:37:52 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:37:52 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0073, 1.0062, 1.011, 1.0096, 1.0099, 0.9923.
2025-10-09 22:37:54 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.697832s.
2025-10-09 22:37:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7152569b34257001db8f2c5f921c35b2de8a3636/EPI2MNI".
2025-10-09 22:37:54 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:37:54 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:38:28 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7152569b34257001db8f2c5f921c35b2de8a3636/EPI2MNI/stderr.nipype-init).
2025-10-09 22:38:28 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:38:28 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7152569b34257001db8f2c5f921c35b2de8a3636/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7152569b34257001db8f2c5f921c35b2de8a3636/SharpenEPI/sub-cIVs025_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7152569b34257001db8f2c5f921c35b2de8a3636/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7152569b34257001db8f2c5f921c35b2de8a3636/SharpenEPI/sub-cIVs025_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7152569b34257001db8f2c5f921c35b2de8a3636/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7152569b34257001db8f2c5f921c35b2de8a3636/SharpenEPI/sub-cIVs025_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7152569b34257001db8f2c5f921c35b2de8a3636/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:39:46 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:39:46 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7152569b34257001db8f2c5f921c35b2de8a3636/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:39:46 | INFO | niworkflows | Generating visual report
2025-10-09 22:40:04 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 130.419996s.
2025-10-09 22:40:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/post_n4".
2025-10-09 22:40:06 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.6254239999999998s.
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/da27b3d3084a17262fc98d1b2625c2237b91f209/sp_mask".
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:40:11 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.966028s.
2025-10-09 22:40:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/da27b3d3084a17262fc98d1b2625c2237b91f209/drift".
2025-10-09 22:40:12 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:40:12 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 1.0, 0.9951, 1.0031, 1.0007, 0.9948, 0.9958, 0.9964, 0.9979.
2025-10-09 22:40:14 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.122203s.
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/da27b3d3084a17262fc98d1b2625c2237b91f209/EPI2MNI".
2025-10-09 22:40:16 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:40:16 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:40:53 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:40:53 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/da27b3d3084a17262fc98d1b2625c2237b91f209/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/da27b3d3084a17262fc98d1b2625c2237b91f209/SharpenEPI/sub-cIVs025_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/da27b3d3084a17262fc98d1b2625c2237b91f209/SharpenEPI/sub-cIVs025_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/da27b3d3084a17262fc98d1b2625c2237b91f209/SharpenEPI/sub-cIVs025_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:42:08 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:42:08 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/da27b3d3084a17262fc98d1b2625c2237b91f209/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:42:08 | INFO | niworkflows | Generating visual report
2025-10-09 22:42:27 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 130.954305s.
2025-10-09 22:42:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/post_n4".
2025-10-09 22:42:28 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:42:31 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.596876s.
2025-10-09 22:42:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/sp_mask".
2025-10-09 22:42:32 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:42:33 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.940852s.
2025-10-09 22:42:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/drift".
2025-10-09 22:42:34 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:42:34 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9975, 0.9971, 1.0003, 0.9979, 0.9958, 0.9985, 0.9993, 0.997.
2025-10-09 22:42:36 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 2.135457s.
2025-10-09 22:42:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/EPI2MNI".
2025-10-09 22:42:38 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:42:38 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:43:12 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:43:12 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/SharpenEPI/sub-cIVs025_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/SharpenEPI/sub-cIVs025_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/SharpenEPI/sub-cIVs025_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:44:28 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:44:28 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:44:28 | INFO | niworkflows | Generating visual report
2025-10-09 22:44:47 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 128.797645s.
2025-10-09 22:44:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/final_masked".
2025-10-09 22:44:48 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:44:48 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.037263s.
2025-10-09 22:44:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/dwidenoise".
2025-10-09 22:44:50 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:45:13 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 23.130907s.
2025-10-09 22:45:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/ResampleSegmentation".
2025-10-09 22:45:14 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:45:18 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.934244s.
2025-10-09 22:45:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/final_masked".
2025-10-09 22:45:20 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:45:20 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.037672s.
2025-10-09 22:45:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/eb8881c8a76261dc336947f2545fdc2d9039b11d/dwidenoise".
2025-10-09 22:45:22 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:45:45 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 22.488721s.
2025-10-09 22:45:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/eb8881c8a76261dc336947f2545fdc2d9039b11d/ResampleSegmentation".
2025-10-09 22:45:46 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:45:50 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.801735s.
2025-10-09 22:45:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/final_masked".
2025-10-09 22:45:50 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:45:50 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.071557s.
2025-10-09 22:45:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/dwidenoise".
2025-10-09 22:45:52 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:46:34 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 41.298507s.
2025-10-09 22:46:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/ResampleSegmentation".
2025-10-09 22:46:34 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:46:38 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.8374449999999998s.
2025-10-09 22:46:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/final_masked".
2025-10-09 22:46:38 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:46:38 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.036921s.
2025-10-09 22:46:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/dwidenoise".
2025-10-09 22:46:40 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:47:21 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 40.21156s.
2025-10-09 22:47:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/ResampleSegmentation".
2025-10-09 22:47:22 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:47:26 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.726085s.
2025-10-09 22:47:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/85c00d77896b33697de9dbd8b443578de7907abf/final_masked".
2025-10-09 22:47:26 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:47:26 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.043035s.
2025-10-09 22:47:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/85c00d77896b33697de9dbd8b443578de7907abf/dwidenoise".
2025-10-09 22:47:28 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:47:50 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 21.546882s.
2025-10-09 22:47:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/85c00d77896b33697de9dbd8b443578de7907abf/ResampleSegmentation".
2025-10-09 22:47:50 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:47:54 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.642597s.
2025-10-09 22:47:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7152569b34257001db8f2c5f921c35b2de8a3636/final_masked".
2025-10-09 22:47:54 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:47:54 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.036705s.
2025-10-09 22:47:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/7152569b34257001db8f2c5f921c35b2de8a3636/dwidenoise".
2025-10-09 22:47:56 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:48:18 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 21.761203s.
2025-10-09 22:48:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7152569b34257001db8f2c5f921c35b2de8a3636/ResampleSegmentation".
2025-10-09 22:48:18 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:48:22 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.675576s.
2025-10-09 22:48:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/final_masked".
2025-10-09 22:48:22 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:48:22 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.036115s.
2025-10-09 22:48:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/da27b3d3084a17262fc98d1b2625c2237b91f209/dwidenoise".
2025-10-09 22:48:24 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:49:02 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 38.098952s.
2025-10-09 22:49:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/da27b3d3084a17262fc98d1b2625c2237b91f209/ResampleSegmentation".
2025-10-09 22:49:04 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:49:08 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.735744s.
2025-10-09 22:49:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/final_masked".
2025-10-09 22:49:08 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:49:08 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.034827s.
2025-10-09 22:49:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/dwidenoise".
2025-10-09 22:49:10 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:49:48 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 37.943648s.
2025-10-09 22:49:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/ResampleSegmentation".
2025-10-09 22:49:50 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:49:54 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.724597s.
2025-10-09 22:49:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/dwimodel".
2025-10-09 22:49:54 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:49:58 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.894434s.
2025-10-09 22:50:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/estimate_sigma".
2025-10-09 22:50:00 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:00 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.037778s.
2025-10-09 22:50:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/get_wm".
2025-10-09 22:50:02 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:02 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035572s.
2025-10-09 22:50:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/eb8881c8a76261dc336947f2545fdc2d9039b11d/dwimodel".
2025-10-09 22:50:04 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:50:08 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.823238s.
2025-10-09 22:50:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/eb8881c8a76261dc336947f2545fdc2d9039b11d/estimate_sigma".
2025-10-09 22:50:08 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:08 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.037443s.
2025-10-09 22:50:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/get_wm".
2025-10-09 22:50:10 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:10 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035227s.
2025-10-09 22:50:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/dwimodel".
2025-10-09 22:50:12 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:50:17 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.261069s.
2025-10-09 22:50:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/estimate_sigma".
2025-10-09 22:50:18 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:18 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036999s.
2025-10-09 22:50:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/get_wm".
2025-10-09 22:50:20 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:20 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035279s.
2025-10-09 22:50:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/dwimodel".
2025-10-09 22:50:22 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:50:27 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.298436s.
2025-10-09 22:50:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/estimate_sigma".
2025-10-09 22:50:28 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:28 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036713s.
2025-10-09 22:50:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/get_wm".
2025-10-09 22:50:30 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:30 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035747s.
2025-10-09 22:50:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/85c00d77896b33697de9dbd8b443578de7907abf/dwimodel".
2025-10-09 22:50:32 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:50:36 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.778599s.
2025-10-09 22:50:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/85c00d77896b33697de9dbd8b443578de7907abf/estimate_sigma".
2025-10-09 22:50:36 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:36 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.037201s.
2025-10-09 22:50:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/85c00d77896b33697de9dbd8b443578de7907abf/get_wm".
2025-10-09 22:50:38 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:38 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.035719s.
2025-10-09 22:50:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/7152569b34257001db8f2c5f921c35b2de8a3636/dwimodel".
2025-10-09 22:50:40 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:50:44 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.791303s.
2025-10-09 22:50:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/7152569b34257001db8f2c5f921c35b2de8a3636/estimate_sigma".
2025-10-09 22:50:44 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:44 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036969s.
2025-10-09 22:50:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7152569b34257001db8f2c5f921c35b2de8a3636/get_wm".
2025-10-09 22:50:46 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:46 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034681s.
2025-10-09 22:50:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/da27b3d3084a17262fc98d1b2625c2237b91f209/dwimodel".
2025-10-09 22:50:48 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:50:53 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.185399s.
2025-10-09 22:50:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/da27b3d3084a17262fc98d1b2625c2237b91f209/estimate_sigma".
2025-10-09 22:50:54 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:54 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036768s.
2025-10-09 22:50:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/get_wm".
2025-10-09 22:50:56 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:50:56 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.03399s.
2025-10-09 22:50:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/dwimodel".
2025-10-09 22:50:58 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:51:03 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 4.241803s.
2025-10-09 22:51:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/estimate_sigma".
2025-10-09 22:51:04 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:51:04 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.036179s.
2025-10-09 22:51:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/get_wm".
2025-10-09 22:51:06 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:51:06 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.034393s.
2025-10-09 22:51:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/cc_mask".
2025-10-09 22:51:08 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:51:09 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.513907s.
2025-10-09 22:51:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/mosaic_fa".
2025-10-09 22:51:10 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:12 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.301389s.
2025-10-09 22:51:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/mosaic_md".
2025-10-09 22:51:12 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:14 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.37225s.
2025-10-09 22:51:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/plot_heatmap".
2025-10-09 22:51:14 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:16 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.411439s.
2025-10-09 22:51:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/eb8881c8a76261dc336947f2545fdc2d9039b11d/cc_mask".
2025-10-09 22:51:16 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:51:17 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.501647s.
2025-10-09 22:51:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/mosaic_fa".
2025-10-09 22:51:18 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:20 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.287444s.
2025-10-09 22:51:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/mosaic_md".
2025-10-09 22:51:20 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.529613s.
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/plot_heatmap".
2025-10-09 22:51:22 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:24 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.159966s.
2025-10-09 22:51:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/cc_mask".
2025-10-09 22:51:24 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:51:25 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.519246s.
2025-10-09 22:51:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/mosaic_fa".
2025-10-09 22:51:26 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:28 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.422426s.
2025-10-09 22:51:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/mosaic_md".
2025-10-09 22:51:28 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:30 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.54729s.
2025-10-09 22:51:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/plot_heatmap".
2025-10-09 22:51:30 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:32 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.193372s.
2025-10-09 22:51:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/cc_mask".
2025-10-09 22:51:32 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:51:33 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.514479s.
2025-10-09 22:51:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/mosaic_fa".
2025-10-09 22:51:34 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:36 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.413353s.
2025-10-09 22:51:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/mosaic_md".
2025-10-09 22:51:36 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.362263s.
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/plot_heatmap".
2025-10-09 22:51:38 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.402846s.
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/85c00d77896b33697de9dbd8b443578de7907abf/cc_mask".
2025-10-09 22:51:40 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:51:41 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.4948s.
2025-10-09 22:51:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/85c00d77896b33697de9dbd8b443578de7907abf/mosaic_fa".
2025-10-09 22:51:42 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:44 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.296409s.
2025-10-09 22:51:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/85c00d77896b33697de9dbd8b443578de7907abf/mosaic_md".
2025-10-09 22:51:44 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:46 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.53349s.
2025-10-09 22:51:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/85c00d77896b33697de9dbd8b443578de7907abf/plot_heatmap".
2025-10-09 22:51:46 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:48 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.128577s.
2025-10-09 22:51:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/7152569b34257001db8f2c5f921c35b2de8a3636/cc_mask".
2025-10-09 22:51:48 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:51:49 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.491442s.
2025-10-09 22:51:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7152569b34257001db8f2c5f921c35b2de8a3636/mosaic_fa".
2025-10-09 22:51:50 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:52 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.43124s.
2025-10-09 22:51:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7152569b34257001db8f2c5f921c35b2de8a3636/mosaic_md".
2025-10-09 22:51:52 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:51:54 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.57166s.
2025-10-09 22:51:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7152569b34257001db8f2c5f921c35b2de8a3636/plot_heatmap".
2025-10-09 22:51:54 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:51:56 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.12806s.
2025-10-09 22:51:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/da27b3d3084a17262fc98d1b2625c2237b91f209/cc_mask".
2025-10-09 22:51:56 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:51:57 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.515549s.
2025-10-09 22:51:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/mosaic_fa".
2025-10-09 22:51:58 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:52:00 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.468555s.
2025-10-09 22:52:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/mosaic_md".
2025-10-09 22:52:00 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:52:02 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.403762s.
2025-10-09 22:52:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/plot_heatmap".
2025-10-09 22:52:02 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:52:04 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.184187s.
2025-10-09 22:52:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/cc_mask".
2025-10-09 22:52:04 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:52:05 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.493545s.
2025-10-09 22:52:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/mosaic_fa".
2025-10-09 22:52:06 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:52:08 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.568734s.
2025-10-09 22:52:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/mosaic_md".
2025-10-09 22:52:08 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:52:10 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.391359s.
2025-10-09 22:52:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/plot_heatmap".
2025-10-09 22:52:10 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:52:12 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.184194s.
2025-10-09 22:52:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/ds_report_fa".
2025-10-09 22:52:12 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:12 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.00493s.
2025-10-09 22:52:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/ds_report_md".
2025-10-09 22:52:12 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:12 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004656s.
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/0985a5bb3d17bb3c7f02f15e632e6101fa78798e/ds_report_hm".
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004672s.
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/ds_report_fa".
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004656s.
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/ds_report_md".
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004737s.
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/eb8881c8a76261dc336947f2545fdc2d9039b11d/ds_report_hm".
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004742s.
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/ds_report_fa".
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004697s.
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/ds_report_md".
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.010896s.
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/c34e0cb390d508aee16c9353e7b06ba4c864f8c5/ds_report_hm".
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004654s.
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/ds_report_fa".
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:13 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004738s.
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/ds_report_md".
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004675s.
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/ac4eb6568ebc2adc1189ac4b5cc9ba08890e067d/ds_report_hm".
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004733s.
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/85c00d77896b33697de9dbd8b443578de7907abf/ds_report_fa".
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004619s.
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/85c00d77896b33697de9dbd8b443578de7907abf/ds_report_md".
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004627s.
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/85c00d77896b33697de9dbd8b443578de7907abf/ds_report_hm".
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004638s.
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7152569b34257001db8f2c5f921c35b2de8a3636/ds_report_fa".
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004698s.
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7152569b34257001db8f2c5f921c35b2de8a3636/ds_report_md".
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004716s.
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7152569b34257001db8f2c5f921c35b2de8a3636/ds_report_hm".
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:14 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004679s.
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/ds_report_fa".
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004659s.
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/ds_report_md".
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004697s.
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/da27b3d3084a17262fc98d1b2625c2237b91f209/ds_report_hm".
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004728s.
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/ds_report_fa".
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004728s.
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/ds_report_md".
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004749s.
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/7564bf2f1af64ea3d232c5ed294815e60ab3f29b/ds_report_hm".
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004752s.
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:52:15 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:52:24 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 8.993435999999999s.
2025-10-09 22:52:25 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:52:25 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:52:34 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 8.980608s.
2025-10-09 22:52:35 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:52:35 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:52:44 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 8.939992s.
2025-10-09 22:52:45 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:52:45 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:52:45 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:52:45 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:52:45 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:52:45 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:52:45 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:52:45 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:52:45 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:52:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/Enhance".
2025-10-09 22:52:47 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:48 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.59728s.
2025-10-09 22:52:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/format_tpm_names".
2025-10-09 22:52:49 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:51 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.8268140000000002s.
2025-10-09 22:52:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/Grad".
2025-10-09 22:52:51 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:52:58 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 6.378249s.
2025-10-09 22:52:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/apply_mask".
2025-10-09 22:52:59 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:53:00 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.283523s.
2025-10-09 22:53:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/GradientThreshold".
2025-10-09 22:53:01 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:53:15 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 13.363682s.
2025-10-09 22:53:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/segmentation".
2025-10-09 22:53:15 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:54:47 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 91.493142s.
2025-10-09 22:54:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/ArtifactMask".
2025-10-09 22:54:47 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:54:54 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 6.206188s.
2025-10-09 22:54:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/PlotHeadmask".
2025-10-09 22:54:55 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:54:58 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 2.977373s.
2025-10-09 22:54:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/harmonize".
2025-10-09 22:54:59 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:55:00 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 1.074862s.
2025-10-09 22:55:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/PlotSegmentation".
2025-10-09 22:55:01 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:55:05 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 3.4086790000000002s.
2025-10-09 22:55:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/provenance".
2025-10-09 22:55:05 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:55:05 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.057526s.
2025-10-09 22:55:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/ComputeQI2".
2025-10-09 22:55:06 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:55:06 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.271383s.
2025-10-09 22:55:06 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:55:06 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/88a18701be02b2a21c37873b84a35ad0d4a9c5f2/ComputeQI2)
2025-10-09 22:55:06 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=239) crashed: /var/lib/condor/execute/dir_3950045/ds/logs/crash-20251009-225506-fhoffstaedter-ComputeQI2.a0-b6d22518-daef-4aa0-a71d-2a220f070110.txt
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx1/anat/sub-cIVs025_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx1/dwi/sub-cIVs025_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx1/dwi/sub-cIVs025_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx1/dwi/sub-cIVs025_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-114_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx1/dwi/sub-cIVs025_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx1/dwi/sub-cIVs025_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx1/dwi/sub-cIVs025_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx2/anat/sub-cIVs025_ses-s1Bx2_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx2/dwi/sub-cIVs025_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx2/dwi/sub-cIVs025_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx2/dwi/sub-cIVs025_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-114_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx2/dwi/sub-cIVs025_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx2/dwi/sub-cIVs025_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025/ses-s1Bx2/dwi/sub-cIVs025_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs025 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_3950045/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 16)
run (error: 1)
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