f.hoffstaedter/ds003416-mriqc
1
0
Fork 0
Code Pull requests Packages Activity
ds003416-mriqc/logs/sub-cIVs024_10066409.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

996 lines
192 KiB (Stored with Git Annex)
Text
Raw Permalink Blame History

This file contains invisible Unicode characters

This file contains invisible Unicode characters that are indistinguishable to humans but may be processed differently by a computer. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

install(ok): /var/lib/condor/execute/dir_368397/ds (dataset)
install(ok): /var/lib/condor/execute/dir_368397/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_368397/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_368397/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:56:40 | IMPORTANT | mriqc | Extracting metadata and entities for 2 input runs of modality 't1w'...
2025-10-09 21:56:40 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:56:40 | IMPORTANT | mriqc | Extracting metadata and entities for 12 input runs of modality 'dwi'...
2025-10-09 21:56:41 | WARNING | nipype.workflow | 4 cannot be processed (too short or too long)
2025-10-09 21:56:41 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:56:41 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215639_9447a07e-70f7-42d4-9ce6-7490f6d11f1e.toml.
2025-10-09 21:56:45 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:56:46 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:56:46 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 8 NIfTI files..
2025-10-09 21:56:46 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 2 NIfTI files..
2025-10-09 21:56:50 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:56:54 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:56:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/650e5e7b26c4153297a4e816fe378be1ba180a84/conform".
2025-10-09 21:56:54 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:56:55 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.26419s.
2025-10-09 21:56:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/02b66b111d37537b818548b638c3564b5c55beb6/conform".
2025-10-09 21:56:56 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:56:57 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.657461s.
2025-10-09 21:56:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/1ecdb676166e35c45740d474b44bab43b0a108be/sanitize".
2025-10-09 21:56:58 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:56:59 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.688864s.
2025-10-09 21:57:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/1ecdb676166e35c45740d474b44bab43b0a108be/load_bmat".
2025-10-09 21:57:00 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:00 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.146345s.
2025-10-09 21:57:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/1ecdb676166e35c45740d474b44bab43b0a108be/provenance".
2025-10-09 21:57:02 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:02 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.01788s.
2025-10-09 21:57:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/sanitize".
2025-10-09 21:57:02 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:03 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.69312s.
2025-10-09 21:57:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/load_bmat".
2025-10-09 21:57:04 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:04 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.020563s.
2025-10-09 21:57:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/provenance".
2025-10-09 21:57:06 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:06 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.017762s.
2025-10-09 21:57:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/4e83e16ab47e24b85acee3da675d4f5512a7a453/sanitize".
2025-10-09 21:57:06 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:07 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.901806s.
2025-10-09 21:57:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/4e83e16ab47e24b85acee3da675d4f5512a7a453/load_bmat".
2025-10-09 21:57:08 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:08 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.021584s.
2025-10-09 21:57:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/4e83e16ab47e24b85acee3da675d4f5512a7a453/provenance".
2025-10-09 21:57:10 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:10 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.024758s.
2025-10-09 21:57:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/49935afce9d426b206b368d9fa747d3906ee9c06/sanitize".
2025-10-09 21:57:10 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:11 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.887544s.
2025-10-09 21:57:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/49935afce9d426b206b368d9fa747d3906ee9c06/load_bmat".
2025-10-09 21:57:12 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:12 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.020749s.
2025-10-09 21:57:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/49935afce9d426b206b368d9fa747d3906ee9c06/provenance".
2025-10-09 21:57:14 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:14 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.023324s.
2025-10-09 21:57:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/f542b09247908bbb0f3bed84d35af62af0b67e28/sanitize".
2025-10-09 21:57:14 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:15 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.698301s.
2025-10-09 21:57:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/f542b09247908bbb0f3bed84d35af62af0b67e28/load_bmat".
2025-10-09 21:57:16 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:16 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.021547s.
2025-10-09 21:57:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/f542b09247908bbb0f3bed84d35af62af0b67e28/provenance".
2025-10-09 21:57:18 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:18 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.019156s.
2025-10-09 21:57:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/d8fc9a6334c95edcb7d3afc0271837c90852001c/sanitize".
2025-10-09 21:57:18 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:19 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.680547s.
2025-10-09 21:57:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/d8fc9a6334c95edcb7d3afc0271837c90852001c/load_bmat".
2025-10-09 21:57:20 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:20 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.02118s.
2025-10-09 21:57:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/d8fc9a6334c95edcb7d3afc0271837c90852001c/provenance".
2025-10-09 21:57:22 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:22 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.019091s.
2025-10-09 21:57:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/61d5cff4ff6409693acd9efcbab69ce061667231/sanitize".
2025-10-09 21:57:22 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:23 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.886304s.
2025-10-09 21:57:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/61d5cff4ff6409693acd9efcbab69ce061667231/load_bmat".
2025-10-09 21:57:24 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:24 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.020596s.
2025-10-09 21:57:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/61d5cff4ff6409693acd9efcbab69ce061667231/provenance".
2025-10-09 21:57:26 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:26 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.024435s.
2025-10-09 21:57:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/f6b3f0eef549b051a03868fec766cb55417dd142/sanitize".
2025-10-09 21:57:26 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:57:27 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.906326s.
2025-10-09 21:57:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/f6b3f0eef549b051a03868fec766cb55417dd142/load_bmat".
2025-10-09 21:57:28 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:57:28 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.021409s.
2025-10-09 21:57:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/f6b3f0eef549b051a03868fec766cb55417dd142/provenance".
2025-10-09 21:57:30 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:57:30 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.024471s.
2025-10-09 21:57:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/pre_clip".
2025-10-09 21:57:30 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:57:38 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 7.493007s.
2025-10-09 21:57:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/650e5e7b26c4153297a4e816fe378be1ba180a84/RotationMask".
2025-10-09 21:57:38 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:57:39 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.570814s.
2025-10-09 21:57:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/PlotMosaicNoise".
2025-10-09 21:57:40 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:57:44 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.076854s.
2025-10-09 21:57:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/02b66b111d37537b818548b638c3564b5c55beb6/pre_clip".
2025-10-09 21:57:46 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:57:55 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 8.661562s.
2025-10-09 21:57:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/02b66b111d37537b818548b638c3564b5c55beb6/RotationMask".
2025-10-09 21:57:56 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:57:57 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.800475s.
2025-10-09 21:57:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/02b66b111d37537b818548b638c3564b5c55beb6/PlotMosaicNoise".
2025-10-09 21:57:58 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:58:03 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.456203s.
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/1ecdb676166e35c45740d474b44bab43b0a108be/piesno".
2025-10-09 21:58:04 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:05 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.774992s.
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/1ecdb676166e35c45740d474b44bab43b0a108be/shells".
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:06 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000653s.
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/piesno".
2025-10-09 21:58:08 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:09 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.801275s.
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/shells".
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000624s.
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/4e83e16ab47e24b85acee3da675d4f5512a7a453/piesno".
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:13 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.01532s.
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/4e83e16ab47e24b85acee3da675d4f5512a7a453/shells".
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000691s.
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/49935afce9d426b206b368d9fa747d3906ee9c06/piesno".
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:17 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.097635s.
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/49935afce9d426b206b368d9fa747d3906ee9c06/shells".
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000666s.
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/f542b09247908bbb0f3bed84d35af62af0b67e28/piesno".
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:21 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.846022s.
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/f542b09247908bbb0f3bed84d35af62af0b67e28/shells".
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000624s.
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/d8fc9a6334c95edcb7d3afc0271837c90852001c/piesno".
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:25 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.795528s.
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/d8fc9a6334c95edcb7d3afc0271837c90852001c/shells".
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000639s.
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/61d5cff4ff6409693acd9efcbab69ce061667231/piesno".
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:29 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.053368s.
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/61d5cff4ff6409693acd9efcbab69ce061667231/shells".
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:30 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000878s.
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/f6b3f0eef549b051a03868fec766cb55417dd142/piesno".
2025-10-09 21:58:32 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:33 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.138502s.
2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/f6b3f0eef549b051a03868fec766cb55417dd142/shells".
2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:34 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000672s.
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/pre_n4".
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:00:21 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 104.407903s.
2025-10-09 22:00:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/ds_report_background".
2025-10-09 22:00:22 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:00:22 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.007016s.
2025-10-09 22:00:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/02b66b111d37537b818548b638c3564b5c55beb6/pre_n4".
2025-10-09 22:00:22 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:02:07 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 104.595344s.
2025-10-09 22:02:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/02b66b111d37537b818548b638c3564b5c55beb6/ds_report_background".
2025-10-09 22:02:08 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:02:08 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.004001s.
2025-10-09 22:02:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/1ecdb676166e35c45740d474b44bab43b0a108be/dwi_ref".
2025-10-09 22:02:08 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:09 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.419471s.
2025-10-09 22:02:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/1ecdb676166e35c45740d474b44bab43b0a108be/get_lowb".
2025-10-09 22:02:10 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:11 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.268901s.
2025-10-09 22:02:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/dwi_ref".
2025-10-09 22:02:12 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:13 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.418841s.
2025-10-09 22:02:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/get_lowb".
2025-10-09 22:02:14 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:15 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.272499s.
2025-10-09 22:02:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/4e83e16ab47e24b85acee3da675d4f5512a7a453/dwi_ref".
2025-10-09 22:02:16 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:17 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.528238s.
2025-10-09 22:02:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/4e83e16ab47e24b85acee3da675d4f5512a7a453/get_lowb".
2025-10-09 22:02:18 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:19 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.348619s.
2025-10-09 22:02:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/49935afce9d426b206b368d9fa747d3906ee9c06/dwi_ref".
2025-10-09 22:02:20 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:21 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.522319s.
2025-10-09 22:02:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/49935afce9d426b206b368d9fa747d3906ee9c06/get_lowb".
2025-10-09 22:02:22 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:23 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.34174s.
2025-10-09 22:02:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/f542b09247908bbb0f3bed84d35af62af0b67e28/dwi_ref".
2025-10-09 22:02:24 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:25 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.429447s.
2025-10-09 22:02:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/f542b09247908bbb0f3bed84d35af62af0b67e28/get_lowb".
2025-10-09 22:02:26 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:27 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.298498s.
2025-10-09 22:02:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/d8fc9a6334c95edcb7d3afc0271837c90852001c/dwi_ref".
2025-10-09 22:02:28 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:29 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.4591s.
2025-10-09 22:02:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/d8fc9a6334c95edcb7d3afc0271837c90852001c/get_lowb".
2025-10-09 22:02:30 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:31 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.311555s.
2025-10-09 22:02:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/61d5cff4ff6409693acd9efcbab69ce061667231/dwi_ref".
2025-10-09 22:02:32 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:33 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.557277s.
2025-10-09 22:02:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/61d5cff4ff6409693acd9efcbab69ce061667231/get_lowb".
2025-10-09 22:02:34 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:35 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.360513s.
2025-10-09 22:02:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/f6b3f0eef549b051a03868fec766cb55417dd142/dwi_ref".
2025-10-09 22:02:36 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:02:37 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.5565s.
2025-10-09 22:02:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/f6b3f0eef549b051a03868fec766cb55417dd142/get_lowb".
2025-10-09 22:02:38 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:02:39 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.35044s.
2025-10-09 22:02:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/synthstrip".
2025-10-09 22:02:40 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:03:50 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 69.765403s.
2025-10-09 22:03:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/02b66b111d37537b818548b638c3564b5c55beb6/synthstrip".
2025-10-09 22:03:50 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:04:59 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 68.385551s.
2025-10-09 22:05:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ecdb676166e35c45740d474b44bab43b0a108be/pre_clip".
2025-10-09 22:05:00 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:05:01 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.508055s.
2025-10-09 22:05:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ecdb676166e35c45740d474b44bab43b0a108be/SharpenEPI".
2025-10-09 22:05:02 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:08 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.974062s.
2025-10-09 22:05:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/1ecdb676166e35c45740d474b44bab43b0a108be/hmc_b0".
2025-10-09 22:05:10 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:05:27 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 16.079953s.
2025-10-09 22:05:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/pre_clip".
2025-10-09 22:05:28 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:05:29 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.502753s.
2025-10-09 22:05:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/SharpenEPI".
2025-10-09 22:05:30 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:36 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.9626909999999995s.
2025-10-09 22:05:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/hmc_b0".
2025-10-09 22:05:38 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:05:55 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 16.293049s.
2025-10-09 22:05:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/pre_clip".
2025-10-09 22:05:56 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:05:57 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.502264s.
2025-10-09 22:05:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4e83e16ab47e24b85acee3da675d4f5512a7a453/SharpenEPI".
2025-10-09 22:05:58 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:04 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.961007s.
2025-10-09 22:06:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/4e83e16ab47e24b85acee3da675d4f5512a7a453/hmc_b0".
2025-10-09 22:06:06 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:06:27 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.367881s.
2025-10-09 22:06:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/49935afce9d426b206b368d9fa747d3906ee9c06/pre_clip".
2025-10-09 22:06:28 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:06:29 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.524185s.
2025-10-09 22:06:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/49935afce9d426b206b368d9fa747d3906ee9c06/SharpenEPI".
2025-10-09 22:06:30 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:06:36 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.977958s.
2025-10-09 22:06:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/49935afce9d426b206b368d9fa747d3906ee9c06/hmc_b0".
2025-10-09 22:06:38 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:06:59 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.348161s.
2025-10-09 22:07:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/pre_clip".
2025-10-09 22:07:00 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:01 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.5272s.
2025-10-09 22:07:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f542b09247908bbb0f3bed84d35af62af0b67e28/SharpenEPI".
2025-10-09 22:07:02 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:08 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.972505s.
2025-10-09 22:07:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/f542b09247908bbb0f3bed84d35af62af0b67e28/hmc_b0".
2025-10-09 22:07:10 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:27 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 16.25434s.
2025-10-09 22:07:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/pre_clip".
2025-10-09 22:07:28 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:29 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.51968s.
2025-10-09 22:07:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d8fc9a6334c95edcb7d3afc0271837c90852001c/SharpenEPI".
2025-10-09 22:07:30 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:07:36 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.958349s.
2025-10-09 22:07:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/d8fc9a6334c95edcb7d3afc0271837c90852001c/hmc_b0".
2025-10-09 22:07:38 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:07:55 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 16.23113s.
2025-10-09 22:07:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/61d5cff4ff6409693acd9efcbab69ce061667231/pre_clip".
2025-10-09 22:07:56 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:07:57 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.52146s.
2025-10-09 22:07:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/61d5cff4ff6409693acd9efcbab69ce061667231/SharpenEPI".
2025-10-09 22:07:58 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:04 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.954135s.
2025-10-09 22:08:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/61d5cff4ff6409693acd9efcbab69ce061667231/hmc_b0".
2025-10-09 22:08:06 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:27 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.512323s.
2025-10-09 22:08:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6b3f0eef549b051a03868fec766cb55417dd142/pre_clip".
2025-10-09 22:08:28 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:08:29 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.546333s.
2025-10-09 22:08:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6b3f0eef549b051a03868fec766cb55417dd142/SharpenEPI".
2025-10-09 22:08:30 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:08:36 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.973673s.
2025-10-09 22:08:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/f6b3f0eef549b051a03868fec766cb55417dd142/hmc_b0".
2025-10-09 22:08:38 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:08:59 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.689786s.
2025-10-09 22:09:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/post_n4".
2025-10-09 22:09:00 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:23 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 22.613307s.
2025-10-09 22:09:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/650e5e7b26c4153297a4e816fe378be1ba180a84/smoothness".
2025-10-09 22:09:25 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:09:29 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 4.236067s.
2025-10-09 22:09:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/PlotMosaicZoomed".
2025-10-09 22:09:31 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:09:34 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.947569s.
2025-10-09 22:09:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/PlotBrainmask".
2025-10-09 22:09:37 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:09:40 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.077133s.
2025-10-09 22:09:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/02b66b111d37537b818548b638c3564b5c55beb6/post_n4".
2025-10-09 22:09:41 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:03 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 22.55333s.
2025-10-09 22:10:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/02b66b111d37537b818548b638c3564b5c55beb6/smoothness".
2025-10-09 22:10:05 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:10:09 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 4.37142s.
2025-10-09 22:10:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/02b66b111d37537b818548b638c3564b5c55beb6/PlotMosaicZoomed".
2025-10-09 22:10:11 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:10:15 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 4.037282s.
2025-10-09 22:10:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/02b66b111d37537b818548b638c3564b5c55beb6/PlotBrainmask".
2025-10-09 22:10:17 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:10:20 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.127832s.
2025-10-09 22:10:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ecdb676166e35c45740d474b44bab43b0a108be/pre_n4".
2025-10-09 22:10:21 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:26 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.955194s.
2025-10-09 22:10:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/pre_n4".
2025-10-09 22:10:29 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:35 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.97794s.
2025-10-09 22:10:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/pre_n4".
2025-10-09 22:10:37 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:43 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.9622150000000005s.
2025-10-09 22:10:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/49935afce9d426b206b368d9fa747d3906ee9c06/pre_n4".
2025-10-09 22:10:45 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:51 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.972846s.
2025-10-09 22:10:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/pre_n4".
2025-10-09 22:10:53 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:59 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.944825s.
2025-10-09 22:11:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/pre_n4".
2025-10-09 22:11:01 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:07 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.9683779999999995s.
2025-10-09 22:11:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/61d5cff4ff6409693acd9efcbab69ce061667231/pre_n4".
2025-10-09 22:11:09 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:15 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.963783s.
2025-10-09 22:11:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6b3f0eef549b051a03868fec766cb55417dd142/pre_n4".
2025-10-09 22:11:17 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:11:22 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.941511s.
2025-10-09 22:11:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/final_masked".
2025-10-09 22:11:25 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:11:25 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.268897s.
2025-10-09 22:11:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/SpatialNormalization".
2025-10-09 22:11:27 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:11:27 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:12:31 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:12:31 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:12:44 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:12:46 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:12:46 | INFO | niworkflows | Generating visual report
2025-10-09 22:13:00 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 93.511338s.
2025-10-09 22:13:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/ds_report_zoomed".
2025-10-09 22:13:01 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:13:01 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004252s.
2025-10-09 22:13:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/ds_report_bmask".
2025-10-09 22:13:01 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:13:01 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004105s.
2025-10-09 22:13:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/02b66b111d37537b818548b638c3564b5c55beb6/final_masked".
2025-10-09 22:13:01 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:13:01 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.287771s.
2025-10-09 22:13:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/02b66b111d37537b818548b638c3564b5c55beb6/SpatialNormalization".
2025-10-09 22:13:03 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:13:03 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:14:09 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:14:09 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/02b66b111d37537b818548b638c3564b5c55beb6/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/02b66b111d37537b818548b638c3564b5c55beb6/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/02b66b111d37537b818548b638c3564b5c55beb6/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/02b66b111d37537b818548b638c3564b5c55beb6/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/02b66b111d37537b818548b638c3564b5c55beb6/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:14:22 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:14:24 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/02b66b111d37537b818548b638c3564b5c55beb6/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/02b66b111d37537b818548b638c3564b5c55beb6/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:14:24 | INFO | niworkflows | Generating visual report
2025-10-09 22:14:38 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 95.406113s.
2025-10-09 22:14:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/02b66b111d37537b818548b638c3564b5c55beb6/ds_report_zoomed".
2025-10-09 22:14:39 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:14:39 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.003972s.
2025-10-09 22:14:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/02b66b111d37537b818548b638c3564b5c55beb6/ds_report_bmask".
2025-10-09 22:14:39 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:14:39 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.003917s.
2025-10-09 22:14:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ecdb676166e35c45740d474b44bab43b0a108be/synthstrip".
2025-10-09 22:14:39 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:15:25 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 46.616924s.
2025-10-09 22:15:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/synthstrip".
2025-10-09 22:15:27 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:16:13 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 46.610817s.
2025-10-09 22:16:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/synthstrip".
2025-10-09 22:16:15 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:17:01 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 46.671898s.
2025-10-09 22:17:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/49935afce9d426b206b368d9fa747d3906ee9c06/synthstrip".
2025-10-09 22:17:03 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:17:49 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 46.753139s.
2025-10-09 22:17:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/synthstrip".
2025-10-09 22:17:51 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:18:24 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.383018s.
2025-10-09 22:18:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/synthstrip".
2025-10-09 22:18:25 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:18:58 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.428934s.
2025-10-09 22:18:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/61d5cff4ff6409693acd9efcbab69ce061667231/synthstrip".
2025-10-09 22:18:59 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:19:32 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.416849s.
2025-10-09 22:19:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6b3f0eef549b051a03868fec766cb55417dd142/synthstrip".
2025-10-09 22:19:33 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:20:06 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.415923s.
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/ds_report_norm".
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004001s.
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/02b66b111d37537b818548b638c3564b5c55beb6/ds_report_norm".
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.003884s.
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ecdb676166e35c45740d474b44bab43b0a108be/post_n4".
2025-10-09 22:20:07 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:20:09 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.007003s.
2025-10-09 22:20:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/1ecdb676166e35c45740d474b44bab43b0a108be/sp_mask".
2025-10-09 22:20:11 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:20:11 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.518569s.
2025-10-09 22:20:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/1ecdb676166e35c45740d474b44bab43b0a108be/drift".
2025-10-09 22:20:13 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:20:13 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9972, 0.997, 0.9992, 0.9983, 0.9968, 0.9871.
2025-10-09 22:20:14 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.27626s.
2025-10-09 22:20:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ecdb676166e35c45740d474b44bab43b0a108be/EPI2MNI".
2025-10-09 22:20:15 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:20:15 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:20:37 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ecdb676166e35c45740d474b44bab43b0a108be/EPI2MNI/stderr.nipype-init).
2025-10-09 22:20:37 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:20:37 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ecdb676166e35c45740d474b44bab43b0a108be/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ecdb676166e35c45740d474b44bab43b0a108be/SharpenEPI/sub-cIVs024_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ecdb676166e35c45740d474b44bab43b0a108be/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ecdb676166e35c45740d474b44bab43b0a108be/SharpenEPI/sub-cIVs024_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ecdb676166e35c45740d474b44bab43b0a108be/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ecdb676166e35c45740d474b44bab43b0a108be/SharpenEPI/sub-cIVs024_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-114_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ecdb676166e35c45740d474b44bab43b0a108be/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:21:33 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:21:33 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ecdb676166e35c45740d474b44bab43b0a108be/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:21:33 | INFO | niworkflows | Generating visual report
2025-10-09 22:21:47 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.129886s.
2025-10-09 22:21:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/post_n4".
2025-10-09 22:21:49 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:21:51 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.040204s.
2025-10-09 22:21:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/sp_mask".
2025-10-09 22:21:53 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:21:53 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.493439s.
2025-10-09 22:21:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/drift".
2025-10-09 22:21:55 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:21:55 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9979, 0.9975, 1.0014, 1.0013, 0.9973, 0.9885.
2025-10-09 22:21:56 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.278549s.
2025-10-09 22:21:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/EPI2MNI".
2025-10-09 22:21:57 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:21:57 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:22:19 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/EPI2MNI/stderr.nipype-init).
2025-10-09 22:22:19 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:22:19 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/SharpenEPI/sub-cIVs024_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/SharpenEPI/sub-cIVs024_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/SharpenEPI/sub-cIVs024_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-217_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:23:14 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:23:14 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:23:14 | INFO | niworkflows | Generating visual report
2025-10-09 22:23:29 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 91.876519s.
2025-10-09 22:23:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/post_n4".
2025-10-09 22:23:29 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:23:31 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.030928s.
2025-10-09 22:23:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/4e83e16ab47e24b85acee3da675d4f5512a7a453/sp_mask".
2025-10-09 22:23:33 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:23:34 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.733117s.
2025-10-09 22:23:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/4e83e16ab47e24b85acee3da675d4f5512a7a453/drift".
2025-10-09 22:23:35 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:23:35 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9963, 0.997, 1.0009, 1.0006, 0.9986, 0.9963, 0.9989, 0.9866.
2025-10-09 22:23:37 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.641495s.
2025-10-09 22:23:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4e83e16ab47e24b85acee3da675d4f5512a7a453/EPI2MNI".
2025-10-09 22:23:37 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:23:37 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:24:00 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4e83e16ab47e24b85acee3da675d4f5512a7a453/EPI2MNI/stderr.nipype-init).
2025-10-09 22:24:00 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:24:00 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4e83e16ab47e24b85acee3da675d4f5512a7a453/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4e83e16ab47e24b85acee3da675d4f5512a7a453/SharpenEPI/sub-cIVs024_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4e83e16ab47e24b85acee3da675d4f5512a7a453/SharpenEPI/sub-cIVs024_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4e83e16ab47e24b85acee3da675d4f5512a7a453/SharpenEPI/sub-cIVs024_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-112_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:24:55 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:24:55 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4e83e16ab47e24b85acee3da675d4f5512a7a453/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:24:55 | INFO | niworkflows | Generating visual report
2025-10-09 22:25:09 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.355368s.
2025-10-09 22:25:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/49935afce9d426b206b368d9fa747d3906ee9c06/post_n4".
2025-10-09 22:25:11 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:25:13 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.043579s.
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/49935afce9d426b206b368d9fa747d3906ee9c06/sp_mask".
2025-10-09 22:25:15 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:25:16 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.733921s.
2025-10-09 22:25:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/49935afce9d426b206b368d9fa747d3906ee9c06/drift".
2025-10-09 22:25:17 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:25:17 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9964, 0.9944, 0.9983, 0.9971, 0.9951, 0.9948, 0.9957, 0.9872.
2025-10-09 22:25:19 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.6150120000000001s.
2025-10-09 22:25:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/49935afce9d426b206b368d9fa747d3906ee9c06/EPI2MNI".
2025-10-09 22:25:19 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:25:19 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:25:42 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/49935afce9d426b206b368d9fa747d3906ee9c06/EPI2MNI/stderr.nipype-init).
2025-10-09 22:25:42 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:25:42 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/49935afce9d426b206b368d9fa747d3906ee9c06/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/49935afce9d426b206b368d9fa747d3906ee9c06/SharpenEPI/sub-cIVs024_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/49935afce9d426b206b368d9fa747d3906ee9c06/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/49935afce9d426b206b368d9fa747d3906ee9c06/SharpenEPI/sub-cIVs024_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/49935afce9d426b206b368d9fa747d3906ee9c06/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/49935afce9d426b206b368d9fa747d3906ee9c06/SharpenEPI/sub-cIVs024_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-215_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/49935afce9d426b206b368d9fa747d3906ee9c06/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:26:37 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:26:37 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/49935afce9d426b206b368d9fa747d3906ee9c06/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:26:37 | INFO | niworkflows | Generating visual report
2025-10-09 22:26:51 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.388234s.
2025-10-09 22:26:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/post_n4".
2025-10-09 22:26:53 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:26:55 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.086914s.
2025-10-09 22:26:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/f542b09247908bbb0f3bed84d35af62af0b67e28/sp_mask".
2025-10-09 22:26:57 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:26:58 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.524527s.
2025-10-09 22:26:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/f542b09247908bbb0f3bed84d35af62af0b67e28/drift".
2025-10-09 22:26:59 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:26:59 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9931, 0.9995, 0.976, 0.9967, 0.9729, 0.9931.
2025-10-09 22:27:00 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.319766s.
2025-10-09 22:27:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f542b09247908bbb0f3bed84d35af62af0b67e28/EPI2MNI".
2025-10-09 22:27:01 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:27:01 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:27:24 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f542b09247908bbb0f3bed84d35af62af0b67e28/EPI2MNI/stderr.nipype-init).
2025-10-09 22:27:24 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:27:24 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f542b09247908bbb0f3bed84d35af62af0b67e28/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f542b09247908bbb0f3bed84d35af62af0b67e28/SharpenEPI/sub-cIVs024_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-115_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f542b09247908bbb0f3bed84d35af62af0b67e28/SharpenEPI/sub-cIVs024_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-115_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f542b09247908bbb0f3bed84d35af62af0b67e28/SharpenEPI/sub-cIVs024_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-115_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:28:19 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:28:19 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f542b09247908bbb0f3bed84d35af62af0b67e28/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:28:19 | INFO | niworkflows | Generating visual report
2025-10-09 22:28:34 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.697025s.
2025-10-09 22:28:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/post_n4".
2025-10-09 22:28:35 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:28:37 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.080311s.
2025-10-09 22:28:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/d8fc9a6334c95edcb7d3afc0271837c90852001c/sp_mask".
2025-10-09 22:28:39 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:28:40 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.502029s.
2025-10-09 22:28:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/d8fc9a6334c95edcb7d3afc0271837c90852001c/drift".
2025-10-09 22:28:41 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:28:41 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.0008, 1.0043, 1.006, 1.0023, 0.9987, 0.9982.
2025-10-09 22:28:42 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.296557s.
2025-10-09 22:28:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d8fc9a6334c95edcb7d3afc0271837c90852001c/EPI2MNI".
2025-10-09 22:28:43 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:28:43 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:29:04 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d8fc9a6334c95edcb7d3afc0271837c90852001c/EPI2MNI/stderr.nipype-init).
2025-10-09 22:29:04 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:29:04 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d8fc9a6334c95edcb7d3afc0271837c90852001c/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d8fc9a6334c95edcb7d3afc0271837c90852001c/SharpenEPI/sub-cIVs024_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-218_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d8fc9a6334c95edcb7d3afc0271837c90852001c/SharpenEPI/sub-cIVs024_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-218_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d8fc9a6334c95edcb7d3afc0271837c90852001c/SharpenEPI/sub-cIVs024_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-218_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:29:58 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:29:58 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d8fc9a6334c95edcb7d3afc0271837c90852001c/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:29:58 | INFO | niworkflows | Generating visual report
2025-10-09 22:30:13 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 89.663046s.
2025-10-09 22:30:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/61d5cff4ff6409693acd9efcbab69ce061667231/post_n4".
2025-10-09 22:30:13 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:30:15 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.070385s.
2025-10-09 22:30:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/61d5cff4ff6409693acd9efcbab69ce061667231/sp_mask".
2025-10-09 22:30:17 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:30:18 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.727293s.
2025-10-09 22:30:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/61d5cff4ff6409693acd9efcbab69ce061667231/drift".
2025-10-09 22:30:19 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:30:19 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9981, 0.994, 0.9764, 0.9938, 0.9824, 0.9918, 0.9661, 0.9874.
2025-10-09 22:30:21 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.6485210000000001s.
2025-10-09 22:30:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/61d5cff4ff6409693acd9efcbab69ce061667231/EPI2MNI".
2025-10-09 22:30:21 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:30:21 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:30:43 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:30:43 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/61d5cff4ff6409693acd9efcbab69ce061667231/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/61d5cff4ff6409693acd9efcbab69ce061667231/SharpenEPI/sub-cIVs024_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/61d5cff4ff6409693acd9efcbab69ce061667231/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/61d5cff4ff6409693acd9efcbab69ce061667231/SharpenEPI/sub-cIVs024_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/61d5cff4ff6409693acd9efcbab69ce061667231/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/61d5cff4ff6409693acd9efcbab69ce061667231/SharpenEPI/sub-cIVs024_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/61d5cff4ff6409693acd9efcbab69ce061667231/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:31:39 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:31:39 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/61d5cff4ff6409693acd9efcbab69ce061667231/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:31:39 | INFO | niworkflows | Generating visual report
2025-10-09 22:31:53 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.179782s.
2025-10-09 22:31:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6b3f0eef549b051a03868fec766cb55417dd142/post_n4".
2025-10-09 22:31:55 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:31:57 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.073337s.
2025-10-09 22:31:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/f6b3f0eef549b051a03868fec766cb55417dd142/sp_mask".
2025-10-09 22:31:59 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:32:00 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.752312s.
2025-10-09 22:32:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/f6b3f0eef549b051a03868fec766cb55417dd142/drift".
2025-10-09 22:32:01 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:32:01 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 1.0027, 0.956, 0.9982, 0.9867, 1.0023, 0.9613, 1.0082, 0.983.
2025-10-09 22:32:03 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.666141s.
2025-10-09 22:32:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6b3f0eef549b051a03868fec766cb55417dd142/EPI2MNI".
2025-10-09 22:32:03 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:32:03 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:32:25 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:32:25 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6b3f0eef549b051a03868fec766cb55417dd142/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6b3f0eef549b051a03868fec766cb55417dd142/SharpenEPI/sub-cIVs024_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6b3f0eef549b051a03868fec766cb55417dd142/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6b3f0eef549b051a03868fec766cb55417dd142/SharpenEPI/sub-cIVs024_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6b3f0eef549b051a03868fec766cb55417dd142/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6b3f0eef549b051a03868fec766cb55417dd142/SharpenEPI/sub-cIVs024_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6b3f0eef549b051a03868fec766cb55417dd142/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:33:21 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:33:21 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6b3f0eef549b051a03868fec766cb55417dd142/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:33:21 | INFO | niworkflows | Generating visual report
2025-10-09 22:33:36 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.636287s.
2025-10-09 22:33:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/1ecdb676166e35c45740d474b44bab43b0a108be/final_masked".
2025-10-09 22:33:37 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:33:37 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.029961s.
2025-10-09 22:33:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/1ecdb676166e35c45740d474b44bab43b0a108be/dwidenoise".
2025-10-09 22:33:39 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:33:57 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 18.196626s.
2025-10-09 22:33:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/1ecdb676166e35c45740d474b44bab43b0a108be/ResampleSegmentation".
2025-10-09 22:33:59 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:34:02 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.05624s.
2025-10-09 22:34:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/final_masked".
2025-10-09 22:34:03 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:34:03 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.029661s.
2025-10-09 22:34:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/dwidenoise".
2025-10-09 22:34:05 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:34:23 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 17.82057s.
2025-10-09 22:34:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/ResampleSegmentation".
2025-10-09 22:34:23 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:34:26 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.179632s.
2025-10-09 22:34:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/final_masked".
2025-10-09 22:34:27 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:34:27 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.02978s.
2025-10-09 22:34:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/4e83e16ab47e24b85acee3da675d4f5512a7a453/dwidenoise".
2025-10-09 22:34:29 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:35:01 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 32.268036s.
2025-10-09 22:35:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/4e83e16ab47e24b85acee3da675d4f5512a7a453/ResampleSegmentation".
2025-10-09 22:35:03 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:35:06 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.03133s.
2025-10-09 22:35:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/49935afce9d426b206b368d9fa747d3906ee9c06/final_masked".
2025-10-09 22:35:07 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:35:07 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.029639s.
2025-10-09 22:35:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/49935afce9d426b206b368d9fa747d3906ee9c06/dwidenoise".
2025-10-09 22:35:09 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:35:42 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 32.288929s.
2025-10-09 22:35:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/49935afce9d426b206b368d9fa747d3906ee9c06/ResampleSegmentation".
2025-10-09 22:35:43 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:35:46 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 2.989138s.
2025-10-09 22:35:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/final_masked".
2025-10-09 22:35:47 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:35:47 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.030677s.
2025-10-09 22:35:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/f542b09247908bbb0f3bed84d35af62af0b67e28/dwidenoise".
2025-10-09 22:35:49 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:36:08 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 18.476551s.
2025-10-09 22:36:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f542b09247908bbb0f3bed84d35af62af0b67e28/ResampleSegmentation".
2025-10-09 22:36:09 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:36:13 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.29276s.
2025-10-09 22:36:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/final_masked".
2025-10-09 22:36:13 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:36:13 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.030295s.
2025-10-09 22:36:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/d8fc9a6334c95edcb7d3afc0271837c90852001c/dwidenoise".
2025-10-09 22:36:15 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:36:34 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 18.498917s.
2025-10-09 22:36:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/d8fc9a6334c95edcb7d3afc0271837c90852001c/ResampleSegmentation".
2025-10-09 22:36:35 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:36:38 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.253154s.
2025-10-09 22:36:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/61d5cff4ff6409693acd9efcbab69ce061667231/final_masked".
2025-10-09 22:36:39 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:36:39 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.030469s.
2025-10-09 22:36:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/61d5cff4ff6409693acd9efcbab69ce061667231/dwidenoise".
2025-10-09 22:36:41 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:37:15 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 33.386252s.
2025-10-09 22:37:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/61d5cff4ff6409693acd9efcbab69ce061667231/ResampleSegmentation".
2025-10-09 22:37:15 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:37:18 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.176419s.
2025-10-09 22:37:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/f6b3f0eef549b051a03868fec766cb55417dd142/final_masked".
2025-10-09 22:37:19 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:37:19 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.030572s.
2025-10-09 22:37:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/f6b3f0eef549b051a03868fec766cb55417dd142/dwidenoise".
2025-10-09 22:37:21 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:37:54 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 33.185104s.
2025-10-09 22:37:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/f6b3f0eef549b051a03868fec766cb55417dd142/ResampleSegmentation".
2025-10-09 22:37:55 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:37:58 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.127677s.
2025-10-09 22:37:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/1ecdb676166e35c45740d474b44bab43b0a108be/dwimodel".
2025-10-09 22:37:59 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:03 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.361308s.
2025-10-09 22:38:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/1ecdb676166e35c45740d474b44bab43b0a108be/estimate_sigma".
2025-10-09 22:38:03 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:03 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.032509s.
2025-10-09 22:38:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ecdb676166e35c45740d474b44bab43b0a108be/get_wm".
2025-10-09 22:38:05 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:05 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.030566s.
2025-10-09 22:38:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/dwimodel".
2025-10-09 22:38:07 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:11 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.315683s.
2025-10-09 22:38:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/estimate_sigma".
2025-10-09 22:38:11 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:11 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.031712s.
2025-10-09 22:38:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/get_wm".
2025-10-09 22:38:13 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:13 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029951s.
2025-10-09 22:38:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/4e83e16ab47e24b85acee3da675d4f5512a7a453/dwimodel".
2025-10-09 22:38:15 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:19 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.688107s.
2025-10-09 22:38:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/4e83e16ab47e24b85acee3da675d4f5512a7a453/estimate_sigma".
2025-10-09 22:38:19 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:19 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.044039s.
2025-10-09 22:38:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/get_wm".
2025-10-09 22:38:21 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:21 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029944s.
2025-10-09 22:38:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/49935afce9d426b206b368d9fa747d3906ee9c06/dwimodel".
2025-10-09 22:38:23 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:27 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.713045s.
2025-10-09 22:38:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/49935afce9d426b206b368d9fa747d3906ee9c06/estimate_sigma".
2025-10-09 22:38:27 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:27 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.032136s.
2025-10-09 22:38:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/49935afce9d426b206b368d9fa747d3906ee9c06/get_wm".
2025-10-09 22:38:29 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:29 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.030176s.
2025-10-09 22:38:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/f542b09247908bbb0f3bed84d35af62af0b67e28/dwimodel".
2025-10-09 22:38:31 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:35 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.436435s.
2025-10-09 22:38:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/f542b09247908bbb0f3bed84d35af62af0b67e28/estimate_sigma".
2025-10-09 22:38:35 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:35 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.032941s.
2025-10-09 22:38:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/get_wm".
2025-10-09 22:38:37 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:37 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029439s.
2025-10-09 22:38:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/d8fc9a6334c95edcb7d3afc0271837c90852001c/dwimodel".
2025-10-09 22:38:39 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:43 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.417116s.
2025-10-09 22:38:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/d8fc9a6334c95edcb7d3afc0271837c90852001c/estimate_sigma".
2025-10-09 22:38:43 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:43 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.032754s.
2025-10-09 22:38:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/get_wm".
2025-10-09 22:38:45 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:45 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029529s.
2025-10-09 22:38:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/61d5cff4ff6409693acd9efcbab69ce061667231/dwimodel".
2025-10-09 22:38:47 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:51 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.790766s.
2025-10-09 22:38:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/61d5cff4ff6409693acd9efcbab69ce061667231/estimate_sigma".
2025-10-09 22:38:51 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:51 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.032619s.
2025-10-09 22:38:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/61d5cff4ff6409693acd9efcbab69ce061667231/get_wm".
2025-10-09 22:38:53 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:53 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029298s.
2025-10-09 22:38:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/f6b3f0eef549b051a03868fec766cb55417dd142/dwimodel".
2025-10-09 22:38:55 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.821103s.
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/f6b3f0eef549b051a03868fec766cb55417dd142/estimate_sigma".
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:38:59 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.032341s.
2025-10-09 22:39:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6b3f0eef549b051a03868fec766cb55417dd142/get_wm".
2025-10-09 22:39:01 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:39:01 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029844s.
2025-10-09 22:39:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/1ecdb676166e35c45740d474b44bab43b0a108be/cc_mask".
2025-10-09 22:39:03 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:04 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.433824s.
2025-10-09 22:39:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ecdb676166e35c45740d474b44bab43b0a108be/mosaic_fa".
2025-10-09 22:39:05 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:06 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.120628s.
2025-10-09 22:39:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ecdb676166e35c45740d474b44bab43b0a108be/mosaic_md".
2025-10-09 22:39:07 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:08 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.186726s.
2025-10-09 22:39:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ecdb676166e35c45740d474b44bab43b0a108be/plot_heatmap".
2025-10-09 22:39:09 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:10 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.220455s.
2025-10-09 22:39:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/cc_mask".
2025-10-09 22:39:11 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:12 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.424398s.
2025-10-09 22:39:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/mosaic_fa".
2025-10-09 22:39:13 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:14 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.128843s.
2025-10-09 22:39:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/mosaic_md".
2025-10-09 22:39:15 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:17 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.360058s.
2025-10-09 22:39:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/plot_heatmap".
2025-10-09 22:39:17 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:18 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 0.979357s.
2025-10-09 22:39:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/4e83e16ab47e24b85acee3da675d4f5512a7a453/cc_mask".
2025-10-09 22:39:19 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:20 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.449026s.
2025-10-09 22:39:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/mosaic_fa".
2025-10-09 22:39:21 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:22 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.224402s.
2025-10-09 22:39:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/mosaic_md".
2025-10-09 22:39:23 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:25 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.3943400000000001s.
2025-10-09 22:39:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/plot_heatmap".
2025-10-09 22:39:25 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:26 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.031906s.
2025-10-09 22:39:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/49935afce9d426b206b368d9fa747d3906ee9c06/cc_mask".
2025-10-09 22:39:27 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:28 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.424261s.
2025-10-09 22:39:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/49935afce9d426b206b368d9fa747d3906ee9c06/mosaic_fa".
2025-10-09 22:39:29 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:30 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.234866s.
2025-10-09 22:39:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/49935afce9d426b206b368d9fa747d3906ee9c06/mosaic_md".
2025-10-09 22:39:31 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:32 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.197251s.
2025-10-09 22:39:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/49935afce9d426b206b368d9fa747d3906ee9c06/plot_heatmap".
2025-10-09 22:39:33 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:35 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.243268s.
2025-10-09 22:39:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/f542b09247908bbb0f3bed84d35af62af0b67e28/cc_mask".
2025-10-09 22:39:35 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:36 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.427882s.
2025-10-09 22:39:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/mosaic_fa".
2025-10-09 22:39:37 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:38 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.126674s.
2025-10-09 22:39:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/mosaic_md".
2025-10-09 22:39:39 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:41 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.370736s.
2025-10-09 22:39:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/plot_heatmap".
2025-10-09 22:39:41 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:42 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 0.987615s.
2025-10-09 22:39:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/d8fc9a6334c95edcb7d3afc0271837c90852001c/cc_mask".
2025-10-09 22:39:43 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:44 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.440335s.
2025-10-09 22:39:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/mosaic_fa".
2025-10-09 22:39:45 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:47 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.2604090000000001s.
2025-10-09 22:39:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/mosaic_md".
2025-10-09 22:39:47 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:48 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.195348s.
2025-10-09 22:39:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/plot_heatmap".
2025-10-09 22:39:49 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:50 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.202942s.
2025-10-09 22:39:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/61d5cff4ff6409693acd9efcbab69ce061667231/cc_mask".
2025-10-09 22:39:51 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:39:52 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.447279s.
2025-10-09 22:39:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/61d5cff4ff6409693acd9efcbab69ce061667231/mosaic_fa".
2025-10-09 22:39:53 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:54 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.128704s.
2025-10-09 22:39:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/61d5cff4ff6409693acd9efcbab69ce061667231/mosaic_md".
2025-10-09 22:39:55 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:39:57 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.371354s.
2025-10-09 22:39:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/61d5cff4ff6409693acd9efcbab69ce061667231/plot_heatmap".
2025-10-09 22:39:57 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:39:58 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.039696s.
2025-10-09 22:39:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/f6b3f0eef549b051a03868fec766cb55417dd142/cc_mask".
2025-10-09 22:39:59 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:40:00 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.428093s.
2025-10-09 22:40:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6b3f0eef549b051a03868fec766cb55417dd142/mosaic_fa".
2025-10-09 22:40:01 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:02 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.237255s.
2025-10-09 22:40:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6b3f0eef549b051a03868fec766cb55417dd142/mosaic_md".
2025-10-09 22:40:03 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:40:05 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.386301s.
2025-10-09 22:40:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6b3f0eef549b051a03868fec766cb55417dd142/plot_heatmap".
2025-10-09 22:40:05 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:40:06 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.037189s.
2025-10-09 22:40:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ecdb676166e35c45740d474b44bab43b0a108be/ds_report_fa".
2025-10-09 22:40:07 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:07 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004254s.
2025-10-09 22:40:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ecdb676166e35c45740d474b44bab43b0a108be/ds_report_md".
2025-10-09 22:40:07 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:07 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004096s.
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/1ecdb676166e35c45740d474b44bab43b0a108be/ds_report_hm".
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004198s.
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/ds_report_fa".
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004075s.
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/ds_report_md".
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004172s.
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/93c1e109376a9e1f0d0f9cfa295dd8ecea623ef6/ds_report_hm".
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004223s.
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/ds_report_fa".
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004121s.
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/ds_report_md".
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004091s.
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/4e83e16ab47e24b85acee3da675d4f5512a7a453/ds_report_hm".
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.006038s.
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/49935afce9d426b206b368d9fa747d3906ee9c06/ds_report_fa".
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004107s.
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/49935afce9d426b206b368d9fa747d3906ee9c06/ds_report_md".
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:08 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004072s.
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/49935afce9d426b206b368d9fa747d3906ee9c06/ds_report_hm".
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004233s.
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/ds_report_fa".
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004045s.
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/ds_report_md".
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004046s.
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f542b09247908bbb0f3bed84d35af62af0b67e28/ds_report_hm".
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004067s.
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/ds_report_fa".
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004193s.
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/ds_report_md".
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004241s.
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/d8fc9a6334c95edcb7d3afc0271837c90852001c/ds_report_hm".
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004057s.
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/61d5cff4ff6409693acd9efcbab69ce061667231/ds_report_fa".
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:09 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004064s.
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/61d5cff4ff6409693acd9efcbab69ce061667231/ds_report_md".
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004255s.
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/61d5cff4ff6409693acd9efcbab69ce061667231/ds_report_hm".
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004062s.
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6b3f0eef549b051a03868fec766cb55417dd142/ds_report_fa".
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004192s.
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6b3f0eef549b051a03868fec766cb55417dd142/ds_report_md".
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004112s.
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/f6b3f0eef549b051a03868fec766cb55417dd142/ds_report_hm".
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004082s.
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:40:10 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 7.977432s.
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:40:18 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:40:26 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 7.937754s.
2025-10-09 22:40:28 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:40:28 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:40:36 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 7.951024s.
2025-10-09 22:40:38 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:40:38 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:40:38 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:40:38 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:40:38 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:40:38 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:40:38 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/650e5e7b26c4153297a4e816fe378be1ba180a84/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:40:38 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:40:38 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:40:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/650e5e7b26c4153297a4e816fe378be1ba180a84/Enhance".
2025-10-09 22:40:40 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:40:41 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.526363s.
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/650e5e7b26c4153297a4e816fe378be1ba180a84/format_tpm_names".
2025-10-09 22:40:42 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:40:44 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.631078s.
2025-10-09 22:40:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/650e5e7b26c4153297a4e816fe378be1ba180a84/Grad".
2025-10-09 22:40:44 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:40:50 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 5.93907s.
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/650e5e7b26c4153297a4e816fe378be1ba180a84/apply_mask".
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:40:52 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.244303s.
2025-10-09 22:40:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/650e5e7b26c4153297a4e816fe378be1ba180a84/GradientThreshold".
2025-10-09 22:40:54 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:41:06 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 11.474551s.
2025-10-09 22:41:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/650e5e7b26c4153297a4e816fe378be1ba180a84/segmentation".
2025-10-09 22:41:06 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:42:29 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 82.474998s.
2025-10-09 22:42:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/650e5e7b26c4153297a4e816fe378be1ba180a84/ArtifactMask".
2025-10-09 22:42:30 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:42:36 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 5.774613s.
2025-10-09 22:42:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/PlotHeadmask".
2025-10-09 22:42:36 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:42:39 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 2.6880610000000003s.
2025-10-09 22:42:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/650e5e7b26c4153297a4e816fe378be1ba180a84/harmonize".
2025-10-09 22:42:40 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:42:41 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.831404s.
2025-10-09 22:42:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/650e5e7b26c4153297a4e816fe378be1ba180a84/PlotSegmentation".
2025-10-09 22:42:42 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:42:45 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 3.025507s.
2025-10-09 22:42:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/650e5e7b26c4153297a4e816fe378be1ba180a84/provenance".
2025-10-09 22:42:46 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:42:46 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.046858s.
2025-10-09 22:42:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/650e5e7b26c4153297a4e816fe378be1ba180a84/ComputeQI2".
2025-10-09 22:42:46 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:42:47 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.197048s.
2025-10-09 22:42:47 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:42:47 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/650e5e7b26c4153297a4e816fe378be1ba180a84/ComputeQI2)
2025-10-09 22:42:47 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=239) crashed: /var/lib/condor/execute/dir_368397/ds/logs/crash-20251009-224247-fhoffstaedter-ComputeQI2.a0-fddd70ed-df77-4eca-abeb-c17b653d46ce.txt
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx1/anat/sub-cIVs024_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx1/dwi/sub-cIVs024_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx1/dwi/sub-cIVs024_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx1/dwi/sub-cIVs024_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-114_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx1/dwi/sub-cIVs024_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx1/dwi/sub-cIVs024_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx1/dwi/sub-cIVs024_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx2/anat/sub-cIVs024_ses-s1Bx2_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx2/dwi/sub-cIVs024_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-114_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx2/dwi/sub-cIVs024_ses-s1Bx2_acq-b1000n3r21x21x22peAPA_run-217_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx2/dwi/sub-cIVs024_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-115_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx2/dwi/sub-cIVs024_ses-s1Bx2_acq-b1000n40r21x21x22peAPP_run-218_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx2/dwi/sub-cIVs024_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024/ses-s1Bx2/dwi/sub-cIVs024_ses-s1Bx2_acq-b2000n56r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs024 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_368397/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 16)
run (error: 1)
View git blame Copy permalink