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ds003416-mriqc/logs/sub-cIVs016_10066411.out
Felix Hoffstaedter bfde166847 add logs
2025-10-10 23:58:36 +02:00

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install(ok): /var/lib/condor/execute/dir_3185930/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3185930/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3185930/ds/sourcedata/raw]
------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_3185930/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 21:57:57 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-10-09 21:57:57 | IMPORTANT | mriqc | File size ('t1w'): 0.00|0.00 GB [maximum|average].
2025-10-09 21:57:57 | IMPORTANT | mriqc | Extracting metadata and entities for 6 input runs of modality 'dwi'...
2025-10-09 21:57:57 | WARNING | nipype.workflow | 2 cannot be processed (too short or too long)
2025-10-09 21:57:57 | IMPORTANT | mriqc | File size ('dwi'): 0.01|0.01 GB [maximum|average].
2025-10-09 21:57:57 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-215756_a16609a8-6513-4944-8301-239592d556d8.toml.
2025-10-09 21:58:01 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 21:58:02 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 21:58:02 | INFO | nipype.workflow | Building diffusion MRIQC workflow for 4 NIfTI files..
2025-10-09 21:58:03 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-10-09 21:58:06 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 21:58:10 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/5976107c603386ac5c379ca5d8facfce70baac9d/conform".
2025-10-09 21:58:10 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 21:58:11 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.238148s.
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/dc264db468acdc02596e9cff5ab4309d3e600d37/load_bmat".
2025-10-09 21:58:12 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:13 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.144381s.
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/dc264db468acdc02596e9cff5ab4309d3e600d37/sanitize".
2025-10-09 21:58:14 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:15 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.684475s.
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/dc264db468acdc02596e9cff5ab4309d3e600d37/provenance".
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.017414s.
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/load_bmat".
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:16 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.019157s.
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/sanitize".
2025-10-09 21:58:18 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:19 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.68239s.
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/provenance".
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.017227s.
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/load_bmat".
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:20 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.020421s.
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/sanitize".
2025-10-09 21:58:22 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:23 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.976391s.
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/provenance".
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.022109s.
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.load_bmat" in "/tmp/mriqc_wf/dwiMRIQC/38d75c89cfce9597950655b57ed920d6be13f7e4/load_bmat".
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Executing "load_bmat" <mriqc.interfaces.diffusion.ReadDWIMetadata>
2025-10-09 21:58:24 | INFO | nipype.workflow | [Node] Finished "load_bmat", elapsed time 0.020672s.
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sanitize" in "/tmp/mriqc_wf/dwiMRIQC/38d75c89cfce9597950655b57ed920d6be13f7e4/sanitize".
2025-10-09 21:58:26 | INFO | nipype.workflow | [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 21:58:27 | INFO | nipype.workflow | [Node] Finished "sanitize", elapsed time 0.874232s.
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/38d75c89cfce9597950655b57ed920d6be13f7e4/provenance".
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.021954s.
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/5976107c603386ac5c379ca5d8facfce70baac9d/pre_clip".
2025-10-09 21:58:28 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 7.369739s.
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/5976107c603386ac5c379ca5d8facfce70baac9d/RotationMask".
2025-10-09 21:58:36 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 21:58:37 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.593091s.
2025-10-09 21:58:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5976107c603386ac5c379ca5d8facfce70baac9d/PlotMosaicNoise".
2025-10-09 21:58:38 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 21:58:43 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.255423s.
2025-10-09 21:58:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/dc264db468acdc02596e9cff5ab4309d3e600d37/shells".
2025-10-09 21:58:44 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:44 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000638s.
2025-10-09 21:58:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/dc264db468acdc02596e9cff5ab4309d3e600d37/piesno".
2025-10-09 21:58:46 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:47 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.834878s.
2025-10-09 21:58:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/shells".
2025-10-09 21:58:48 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:48 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000596s.
2025-10-09 21:58:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/piesno".
2025-10-09 21:58:50 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:51 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.819633s.
2025-10-09 21:58:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/shells".
2025-10-09 21:58:52 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:52 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.000632s.
2025-10-09 21:58:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/piesno".
2025-10-09 21:58:54 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:55 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 1.067273s.
2025-10-09 21:58:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.shells" in "/tmp/mriqc_wf/dwiMRIQC/38d75c89cfce9597950655b57ed920d6be13f7e4/shells".
2025-10-09 21:58:56 | INFO | nipype.workflow | [Node] Executing "shells" <mriqc.interfaces.diffusion.NumberOfShells>
2025-10-09 21:58:56 | INFO | nipype.workflow | [Node] Finished "shells", elapsed time 0.00064s.
2025-10-09 21:58:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.piesno" in "/tmp/mriqc_wf/dwiMRIQC/38d75c89cfce9597950655b57ed920d6be13f7e4/piesno".
2025-10-09 21:58:58 | INFO | nipype.workflow | [Node] Executing "piesno" <mriqc.interfaces.diffusion.PIESNO>
2025-10-09 21:58:59 | INFO | nipype.workflow | [Node] Finished "piesno", elapsed time 0.987322s.
2025-10-09 21:59:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/5976107c603386ac5c379ca5d8facfce70baac9d/pre_n4".
2025-10-09 21:59:00 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:00:46 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 105.165819s.
2025-10-09 22:00:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5976107c603386ac5c379ca5d8facfce70baac9d/ds_report_background".
2025-10-09 22:00:46 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:00:46 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.006899s.
2025-10-09 22:00:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/dc264db468acdc02596e9cff5ab4309d3e600d37/dwi_ref".
2025-10-09 22:00:47 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:47 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.437324s.
2025-10-09 22:00:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/dc264db468acdc02596e9cff5ab4309d3e600d37/get_lowb".
2025-10-09 22:00:48 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:49 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.268169s.
2025-10-09 22:00:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/dwi_ref".
2025-10-09 22:00:50 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:51 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.433502s.
2025-10-09 22:00:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/get_lowb".
2025-10-09 22:00:52 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:53 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.271517s.
2025-10-09 22:00:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/dwi_ref".
2025-10-09 22:00:54 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:55 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.551921s.
2025-10-09 22:00:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/get_lowb".
2025-10-09 22:00:56 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:00:57 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.362816s.
2025-10-09 22:00:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_ref" in "/tmp/mriqc_wf/dwiMRIQC/38d75c89cfce9597950655b57ed920d6be13f7e4/dwi_ref".
2025-10-09 22:00:58 | INFO | nipype.workflow | [Node] Executing "dwi_ref" <niworkflows.interfaces.images.RobustAverage>
2025-10-09 22:00:59 | INFO | nipype.workflow | [Node] Finished "dwi_ref", elapsed time 0.515945s.
2025-10-09 22:01:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.get_lowb" in "/tmp/mriqc_wf/dwiMRIQC/38d75c89cfce9597950655b57ed920d6be13f7e4/get_lowb".
2025-10-09 22:01:00 | INFO | nipype.workflow | [Node] Executing "get_lowb" <mriqc.interfaces.diffusion.ExtractOrientations>
2025-10-09 22:01:01 | INFO | nipype.workflow | [Node] Finished "get_lowb", elapsed time 0.334997s.
2025-10-09 22:01:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/5976107c603386ac5c379ca5d8facfce70baac9d/synthstrip".
2025-10-09 22:01:02 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:02:12 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 69.503115s.
2025-10-09 22:02:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/pre_clip".
2025-10-09 22:02:12 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:02:13 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.51106s.
2025-10-09 22:02:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/dc264db468acdc02596e9cff5ab4309d3e600d37/SharpenEPI".
2025-10-09 22:02:14 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:02:20 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.994642s.
2025-10-09 22:02:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/dc264db468acdc02596e9cff5ab4309d3e600d37/hmc_b0".
2025-10-09 22:02:22 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:02:39 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 16.372894s.
2025-10-09 22:02:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/pre_clip".
2025-10-09 22:02:40 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:02:41 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.500708s.
2025-10-09 22:02:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/SharpenEPI".
2025-10-09 22:02:42 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:02:48 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 6.00171s.
2025-10-09 22:02:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/hmc_b0".
2025-10-09 22:02:50 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:03:06 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 15.806052s.
2025-10-09 22:03:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/pre_clip".
2025-10-09 22:03:06 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:03:07 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.494806s.
2025-10-09 22:03:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/SharpenEPI".
2025-10-09 22:03:08 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:03:14 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 5.997485s.
2025-10-09 22:03:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/hmc_b0".
2025-10-09 22:03:16 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:03:37 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.422148s.
2025-10-09 22:03:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/pre_clip".
2025-10-09 22:03:38 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:03:39 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.495496s.
2025-10-09 22:03:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/38d75c89cfce9597950655b57ed920d6be13f7e4/SharpenEPI".
2025-10-09 22:03:40 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:03:46 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 6.005055s.
2025-10-09 22:03:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.hmc_b0" in "/tmp/mriqc_wf/dwiMRIQC/38d75c89cfce9597950655b57ed920d6be13f7e4/hmc_b0".
2025-10-09 22:03:48 | INFO | nipype.workflow | [Node] Executing "hmc_b0" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:04:09 | INFO | nipype.workflow | [Node] Finished "hmc_b0", elapsed time 20.536397s.
2025-10-09 22:04:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/5976107c603386ac5c379ca5d8facfce70baac9d/post_n4".
2025-10-09 22:04:10 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:04:34 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 23.373237s.
2025-10-09 22:04:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/5976107c603386ac5c379ca5d8facfce70baac9d/smoothness".
2025-10-09 22:04:34 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:04:39 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 4.214016s.
2025-10-09 22:04:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5976107c603386ac5c379ca5d8facfce70baac9d/PlotMosaicZoomed".
2025-10-09 22:04:40 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:04:44 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.7983919999999998s.
2025-10-09 22:04:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5976107c603386ac5c379ca5d8facfce70baac9d/PlotBrainmask".
2025-10-09 22:04:44 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:04:47 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 3.001897s.
2025-10-09 22:04:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/pre_n4".
2025-10-09 22:04:48 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:04:54 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 6.007662s.
2025-10-09 22:04:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/pre_n4".
2025-10-09 22:04:56 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:02 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.9982050000000005s.
2025-10-09 22:05:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/pre_n4".
2025-10-09 22:05:04 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:10 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.9713s.
2025-10-09 22:05:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/pre_n4".
2025-10-09 22:05:12 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:05:18 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 5.99536s.
2025-10-09 22:05:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/5976107c603386ac5c379ca5d8facfce70baac9d/final_masked".
2025-10-09 22:05:20 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:05:21 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.239469s.
2025-10-09 22:05:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/SpatialNormalization".
2025-10-09 22:05:22 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:05:23 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:06:27 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:06:27 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:06:41 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:06:42 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:06:42 | INFO | niworkflows | Generating visual report
2025-10-09 22:06:56 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 93.512433s.
2025-10-09 22:06:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5976107c603386ac5c379ca5d8facfce70baac9d/ds_report_zoomed".
2025-10-09 22:06:56 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:06:57 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004004s.
2025-10-09 22:06:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5976107c603386ac5c379ca5d8facfce70baac9d/ds_report_bmask".
2025-10-09 22:06:57 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:06:57 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.003921s.
2025-10-09 22:06:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/synthstrip".
2025-10-09 22:06:57 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:07:30 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.243816s.
2025-10-09 22:07:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/synthstrip".
2025-10-09 22:07:31 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:08:04 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.338829s.
2025-10-09 22:08:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/synthstrip".
2025-10-09 22:08:05 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:08:38 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.334471s.
2025-10-09 22:08:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/synthstrip".
2025-10-09 22:08:39 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:09:12 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.253931s.
2025-10-09 22:09:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5976107c603386ac5c379ca5d8facfce70baac9d/ds_report_norm".
2025-10-09 22:09:13 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:09:13 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.003951s.
2025-10-09 22:09:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/post_n4".
2025-10-09 22:09:13 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:09:15 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.102043s.
2025-10-09 22:09:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/dc264db468acdc02596e9cff5ab4309d3e600d37/sp_mask".
2025-10-09 22:09:17 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:09:17 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.514878s.
2025-10-09 22:09:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/dc264db468acdc02596e9cff5ab4309d3e600d37/drift".
2025-10-09 22:09:19 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:09:19 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 0.9942, 1.0003, 1.0044, 0.9428, 0.9966, 0.9891.
2025-10-09 22:09:20 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.256968s.
2025-10-09 22:09:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/dc264db468acdc02596e9cff5ab4309d3e600d37/EPI2MNI".
2025-10-09 22:09:21 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:09:21 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:09:43 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:09:43 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/dc264db468acdc02596e9cff5ab4309d3e600d37/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/dc264db468acdc02596e9cff5ab4309d3e600d37/SharpenEPI/sub-cIVs016_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/dc264db468acdc02596e9cff5ab4309d3e600d37/SharpenEPI/sub-cIVs016_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/dc264db468acdc02596e9cff5ab4309d3e600d37/SharpenEPI/sub-cIVs016_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:10:39 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:10:39 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/dc264db468acdc02596e9cff5ab4309d3e600d37/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:10:39 | INFO | niworkflows | Generating visual report
2025-10-09 22:10:53 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.913381s.
2025-10-09 22:10:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/post_n4".
2025-10-09 22:10:55 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:10:57 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.113558s.
2025-10-09 22:10:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/sp_mask".
2025-10-09 22:10:59 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:10:59 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.512806s.
2025-10-09 22:11:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/drift".
2025-10-09 22:11:01 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:11:01 | INFO | nipype.interface | Correcting drift with 7 b=0 volumes, with global signal estimated at 1.0, 1.001, 0.9822, 0.9998, 1.0026, 0.9996, 1.0015.
2025-10-09 22:11:02 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.2587869999999999s.
2025-10-09 22:11:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/EPI2MNI".
2025-10-09 22:11:03 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:11:03 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:11:23 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/EPI2MNI/stderr.nipype-init).
2025-10-09 22:11:23 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:11:23 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/SharpenEPI/sub-cIVs016_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/SharpenEPI/sub-cIVs016_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/SharpenEPI/sub-cIVs016_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:12:23 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:12:23 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:12:23 | INFO | niworkflows | Generating visual report
2025-10-09 22:12:37 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 94.899763s.
2025-10-09 22:12:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/post_n4".
2025-10-09 22:12:39 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:12:41 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.111876s.
2025-10-09 22:12:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/sp_mask".
2025-10-09 22:12:43 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:12:43 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.747902s.
2025-10-09 22:12:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/drift".
2025-10-09 22:12:45 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:12:45 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9988, 0.9956, 1.0008, 0.9969, 0.995, 0.9913, 0.9975, 0.9994.
2025-10-09 22:12:46 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.712151s.
2025-10-09 22:12:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/EPI2MNI".
2025-10-09 22:12:47 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:12:47 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:13:09 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/EPI2MNI/stderr.nipype-init).
2025-10-09 22:13:09 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:13:09 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/SharpenEPI/sub-cIVs016_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/SharpenEPI/sub-cIVs016_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/SharpenEPI/sub-cIVs016_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:14:05 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:14:05 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:14:05 | INFO | niworkflows | Generating visual report
2025-10-09 22:14:19 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.572032s.
2025-10-09 22:14:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/post_n4".
2025-10-09 22:14:21 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:14:23 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 2.120929s.
2025-10-09 22:14:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.sp_mask" in "/tmp/mriqc_wf/dwiMRIQC/38d75c89cfce9597950655b57ed920d6be13f7e4/sp_mask".
2025-10-09 22:14:25 | INFO | nipype.workflow | [Node] Executing "sp_mask" <mriqc.interfaces.diffusion.SpikingVoxelsMask>
2025-10-09 22:14:25 | INFO | nipype.workflow | [Node] Finished "sp_mask", elapsed time 0.70948s.
2025-10-09 22:14:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.drift" in "/tmp/mriqc_wf/dwiMRIQC/38d75c89cfce9597950655b57ed920d6be13f7e4/drift".
2025-10-09 22:14:27 | INFO | nipype.workflow | [Node] Executing "drift" <mriqc.interfaces.diffusion.CorrectSignalDrift>
2025-10-09 22:14:27 | INFO | nipype.interface | Correcting drift with 9 b=0 volumes, with global signal estimated at 1.0, 0.9952, 0.998, 1.0027, 0.9973, 0.9985, 0.995, 0.9909, 1.0003.
2025-10-09 22:14:28 | INFO | nipype.workflow | [Node] Finished "drift", elapsed time 1.598512s.
2025-10-09 22:14:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/38d75c89cfce9597950655b57ed920d6be13f7e4/EPI2MNI".
2025-10-09 22:14:29 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:14:29 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:14:51 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/38d75c89cfce9597950655b57ed920d6be13f7e4/EPI2MNI/stderr.nipype-init).
2025-10-09 22:14:51 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:14:51 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/38d75c89cfce9597950655b57ed920d6be13f7e4/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/38d75c89cfce9597950655b57ed920d6be13f7e4/SharpenEPI/sub-cIVs016_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/38d75c89cfce9597950655b57ed920d6be13f7e4/SharpenEPI/sub-cIVs016_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/38d75c89cfce9597950655b57ed920d6be13f7e4/SharpenEPI/sub-cIVs016_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi_valid_average_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:15:48 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:15:48 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/38d75c89cfce9597950655b57ed920d6be13f7e4/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:15:48 | INFO | niworkflows | Generating visual report
2025-10-09 22:16:02 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.931036s.
2025-10-09 22:16:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/final_masked".
2025-10-09 22:16:03 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:16:03 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.029976s.
2025-10-09 22:16:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/dc264db468acdc02596e9cff5ab4309d3e600d37/dwidenoise".
2025-10-09 22:16:05 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:16:23 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 17.976391s.
2025-10-09 22:16:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/dc264db468acdc02596e9cff5ab4309d3e600d37/ResampleSegmentation".
2025-10-09 22:16:25 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:16:28 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.137257s.
2025-10-09 22:16:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/final_masked".
2025-10-09 22:16:29 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:16:29 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.029515s.
2025-10-09 22:16:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/dwidenoise".
2025-10-09 22:16:31 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:16:49 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 18.012462s.
2025-10-09 22:16:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/ResampleSegmentation".
2025-10-09 22:16:51 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:16:54 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.080815s.
2025-10-09 22:16:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/final_masked".
2025-10-09 22:16:55 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:16:55 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.029539s.
2025-10-09 22:16:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/dwidenoise".
2025-10-09 22:16:57 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:17:30 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 33.074459s.
2025-10-09 22:17:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/ResampleSegmentation".
2025-10-09 22:17:31 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:17:34 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.126469s.
2025-10-09 22:17:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/dwiMRIQC/synthstrip_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/final_masked".
2025-10-09 22:17:35 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:17:35 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.029855s.
2025-10-09 22:17:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwidenoise" in "/tmp/mriqc_wf/dwiMRIQC/38d75c89cfce9597950655b57ed920d6be13f7e4/dwidenoise".
2025-10-09 22:17:37 | INFO | nipype.workflow | [Node] Executing "dwidenoise" <nipype.interfaces.mrtrix3.preprocess.DWIDenoise>
2025-10-09 22:18:10 | INFO | nipype.workflow | [Node] Finished "dwidenoise", elapsed time 32.870815s.
2025-10-09 22:18:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/dwiMRIQC/SpatialNormalization/38d75c89cfce9597950655b57ed920d6be13f7e4/ResampleSegmentation".
2025-10-09 22:18:11 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 22:18:14 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 3.191995s.
2025-10-09 22:18:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/dc264db468acdc02596e9cff5ab4309d3e600d37/dwimodel".
2025-10-09 22:18:15 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:18:18 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.3908329999999998s.
2025-10-09 22:18:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/dc264db468acdc02596e9cff5ab4309d3e600d37/estimate_sigma".
2025-10-09 22:18:19 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:18:19 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.032065s.
2025-10-09 22:18:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/get_wm".
2025-10-09 22:18:21 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:18:21 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029834s.
2025-10-09 22:18:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/dwimodel".
2025-10-09 22:18:23 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:18:26 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.36963s.
2025-10-09 22:18:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/estimate_sigma".
2025-10-09 22:18:27 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:18:27 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.032176s.
2025-10-09 22:18:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/get_wm".
2025-10-09 22:18:29 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:18:29 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029598s.
2025-10-09 22:18:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/dwimodel".
2025-10-09 22:18:31 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:18:35 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.829112s.
2025-10-09 22:18:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/estimate_sigma".
2025-10-09 22:18:35 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:18:35 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.03177s.
2025-10-09 22:18:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/get_wm".
2025-10-09 22:18:37 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:18:37 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029699s.
2025-10-09 22:18:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwimodel" in "/tmp/mriqc_wf/dwiMRIQC/38d75c89cfce9597950655b57ed920d6be13f7e4/dwimodel".
2025-10-09 22:18:39 | INFO | nipype.workflow | [Node] Executing "dwimodel" <mriqc.interfaces.diffusion.DiffusionModel>
2025-10-09 22:18:43 | INFO | nipype.workflow | [Node] Finished "dwimodel", elapsed time 3.796739s.
2025-10-09 22:18:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.ComputeIQMs.estimate_sigma" in "/tmp/mriqc_wf/dwiMRIQC/ComputeIQMs/38d75c89cfce9597950655b57ed920d6be13f7e4/estimate_sigma".
2025-10-09 22:18:43 | INFO | nipype.workflow | [Node] Executing "estimate_sigma" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:18:43 | INFO | nipype.workflow | [Node] Finished "estimate_sigma", elapsed time 0.032263s.
2025-10-09 22:18:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.get_wm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/get_wm".
2025-10-09 22:18:45 | INFO | nipype.workflow | [Node] Executing "get_wm" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:18:45 | INFO | nipype.workflow | [Node] Finished "get_wm", elapsed time 0.029552s.
2025-10-09 22:18:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/dc264db468acdc02596e9cff5ab4309d3e600d37/cc_mask".
2025-10-09 22:18:47 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:18:47 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.448964s.
2025-10-09 22:18:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/mosaic_fa".
2025-10-09 22:18:49 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:18:50 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.082899s.
2025-10-09 22:18:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/mosaic_md".
2025-10-09 22:18:51 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:18:52 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.338745s.
2025-10-09 22:18:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/plot_heatmap".
2025-10-09 22:18:53 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:18:54 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 0.998092s.
2025-10-09 22:18:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/cc_mask".
2025-10-09 22:18:55 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:18:55 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.4429s.
2025-10-09 22:18:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/mosaic_fa".
2025-10-09 22:18:57 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:18:58 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.1883759999999999s.
2025-10-09 22:18:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/mosaic_md".
2025-10-09 22:18:59 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:19:00 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.3251330000000001s.
2025-10-09 22:19:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/plot_heatmap".
2025-10-09 22:19:01 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:19:02 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 0.964805s.
2025-10-09 22:19:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/cc_mask".
2025-10-09 22:19:03 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:19:03 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.4218s.
2025-10-09 22:19:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/mosaic_fa".
2025-10-09 22:19:05 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:19:06 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.1904379999999999s.
2025-10-09 22:19:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/mosaic_md".
2025-10-09 22:19:07 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:19:08 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.164422s.
2025-10-09 22:19:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/plot_heatmap".
2025-10-09 22:19:09 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:19:10 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.2390349999999999s.
2025-10-09 22:19:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.cc_mask" in "/tmp/mriqc_wf/dwiMRIQC/38d75c89cfce9597950655b57ed920d6be13f7e4/cc_mask".
2025-10-09 22:19:11 | INFO | nipype.workflow | [Node] Executing "cc_mask" <mriqc.interfaces.diffusion.CCSegmentation>
2025-10-09 22:19:11 | INFO | nipype.workflow | [Node] Finished "cc_mask", elapsed time 0.423448s.
2025-10-09 22:19:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/mosaic_fa".
2025-10-09 22:19:13 | INFO | nipype.workflow | [Node] Executing "mosaic_fa" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:19:14 | INFO | nipype.workflow | [Node] Finished "mosaic_fa", elapsed time 1.098337s.
2025-10-09 22:19:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.mosaic_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/mosaic_md".
2025-10-09 22:19:15 | INFO | nipype.workflow | [Node] Executing "mosaic_md" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:19:16 | INFO | nipype.workflow | [Node] Finished "mosaic_md", elapsed time 1.324373s.
2025-10-09 22:19:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.plot_heatmap" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/plot_heatmap".
2025-10-09 22:19:17 | INFO | nipype.workflow | [Node] Executing "plot_heatmap" <nireports.interfaces.dmri.DWIHeatmap>
2025-10-09 22:19:18 | INFO | nipype.workflow | [Node] Finished "plot_heatmap", elapsed time 1.015376s.
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/ds_report_fa".
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004109s.
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/ds_report_md".
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.009478s.
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/dc264db468acdc02596e9cff5ab4309d3e600d37/ds_report_hm".
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.003958s.
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/ds_report_fa".
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004s.
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/ds_report_md".
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004119s.
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/9ec8d9c87b79bb0123faa5ea52b7c5c1eaa99d6c/ds_report_hm".
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004103s.
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/ds_report_fa".
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:19 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004009s.
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/ds_report_md".
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.004107s.
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/176e80ad67a527ccb5363edef13bd7b28d9d3ed7/ds_report_hm".
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.004149s.
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_fa" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/ds_report_fa".
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Executing "ds_report_fa" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Finished "ds_report_fa", elapsed time 0.004014s.
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_md" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/ds_report_md".
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Executing "ds_report_md" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Finished "ds_report_md", elapsed time 0.003981s.
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.dwiMRIQC.dwi_report_wf.ds_report_hm" in "/tmp/mriqc_wf/dwiMRIQC/dwi_report_wf/38d75c89cfce9597950655b57ed920d6be13f7e4/ds_report_hm".
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Executing "ds_report_hm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Finished "ds_report_hm", elapsed time 0.003995s.
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:19:20 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:19:28 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 7.850823s.
2025-10-09 22:19:29 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:19:29 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:19:37 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 7.864962s.
2025-10-09 22:19:37 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:19:37 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 7.868477s.
2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/5976107c603386ac5c379ca5d8facfce70baac9d/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 22:19:45 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 22:19:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/5976107c603386ac5c379ca5d8facfce70baac9d/Enhance".
2025-10-09 22:19:47 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:19:47 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.516639s.
2025-10-09 22:19:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/5976107c603386ac5c379ca5d8facfce70baac9d/format_tpm_names".
2025-10-09 22:19:49 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:19:50 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.6232410000000002s.
2025-10-09 22:19:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/5976107c603386ac5c379ca5d8facfce70baac9d/Grad".
2025-10-09 22:19:51 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:19:57 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 5.983256s.
2025-10-09 22:19:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/5976107c603386ac5c379ca5d8facfce70baac9d/apply_mask".
2025-10-09 22:19:59 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:19:59 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.239318s.
2025-10-09 22:20:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/5976107c603386ac5c379ca5d8facfce70baac9d/GradientThreshold".
2025-10-09 22:20:01 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:20:12 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 11.439337s.
2025-10-09 22:20:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/5976107c603386ac5c379ca5d8facfce70baac9d/segmentation".
2025-10-09 22:20:13 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 22:21:34 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 81.700973s.
2025-10-09 22:21:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/5976107c603386ac5c379ca5d8facfce70baac9d/ArtifactMask".
2025-10-09 22:21:35 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 22:21:40 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 5.413196s.
2025-10-09 22:21:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5976107c603386ac5c379ca5d8facfce70baac9d/PlotHeadmask".
2025-10-09 22:21:41 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:21:43 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 2.519722s.
2025-10-09 22:21:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/5976107c603386ac5c379ca5d8facfce70baac9d/harmonize".
2025-10-09 22:21:45 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 22:21:46 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.841131s.
2025-10-09 22:21:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/5976107c603386ac5c379ca5d8facfce70baac9d/PlotSegmentation".
2025-10-09 22:21:47 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:21:50 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 2.892689s.
2025-10-09 22:21:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/5976107c603386ac5c379ca5d8facfce70baac9d/provenance".
2025-10-09 22:21:51 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:21:51 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.046436s.
2025-10-09 22:21:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/5976107c603386ac5c379ca5d8facfce70baac9d/ComputeQI2".
2025-10-09 22:21:51 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 22:21:51 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.212867s.
2025-10-09 22:21:51 | WARNING | nipype.workflow | Storing result file without outputs
2025-10-09 22:21:51 | WARNING | nipype.workflow | [Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" (/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/5976107c603386ac5c379ca5d8facfce70baac9d/ComputeQI2)
2025-10-09 22:21:51 | ERROR | nipype.workflow | Node ComputeQI2.a0 (taskid=127) crashed: /var/lib/condor/execute/dir_3185930/ds/logs/crash-20251009-222151-fhoffstaedter-ComputeQI2.a0-c99ab4da-c99d-443b-9782-17462a38e6bb.txt
get(ok): sourcedata/raw/sub-cIVs016/ses-s1Bx1/anat/sub-cIVs016_ses-s1Bx1_acq-r10x10x10_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs016/ses-s1Bx1/dwi/sub-cIVs016_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-112_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs016/ses-s1Bx1/dwi/sub-cIVs016_ses-s1Bx1_acq-b1000n3r21x21x22peAPA_run-215_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs016/ses-s1Bx1/dwi/sub-cIVs016_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-113_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs016/ses-s1Bx1/dwi/sub-cIVs016_ses-s1Bx1_acq-b1000n40r21x21x22peAPP_run-216_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs016/ses-s1Bx1/dwi/sub-cIVs016_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-111_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs016/ses-s1Bx1/dwi/sub-cIVs016_ses-s1Bx1_acq-b2000n56r21x21x22peAPP_run-214_dwi.nii.gz (file) [from s3-PUBLIC...]
get(ok): sourcedata/raw/sub-cIVs016 (directory)
get(ok): code/containers/images/bids/bids-mriqc--24.0.2.sing (file) [from datasets.datalad.org...]
run(error): /var/lib/condor/execute/dir_3185930/ds (dataset) [./code/containers/scripts/singularity_cm...]
action summary:
get (notneeded: 4, ok: 9)
run (error: 1)
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