Felix Hoffstaedter
ea8625d083
=== Do not change lines below ===
{
"chain": [],
"cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-cIIIs01 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
"dsid": "aae8905a-985f-46fb-91f5-35c772654ddd",
"exit": 0,
"extra_inputs": [
"code/containers/images/bids/bids-mriqc--24.0.2.sing"
],
"inputs": [
"sourcedata/raw/sub-cIIIs01",
"sourcedata/raw/dataset_description.json"
],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
125 lines
11 KiB
(Stored with Git Annex)
Text
125 lines
11 KiB
(Stored with Git Annex)
Text
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/opt/conda/lib/python3.11/site-packages/nireports/reportlets/mosaic.py:565: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`.
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fig = plt.figure(layout=None)
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/opt/conda/lib/python3.11/site-packages/nireports/reportlets/mosaic.py:565: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`.
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fig = plt.figure(layout=None)
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/opt/conda/lib/python3.11/site-packages/nireports/reportlets/modality/dwi.py:114: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`.
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fig, axs = plt.subplots(
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/opt/conda/lib/python3.11/site-packages/mriqc/interfaces/anatomical.py:490: RuntimeWarning: divide by zero encountered in divide
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bg_data[bg_data > 0] = bg_data[bg_data > 0] / bg_spread
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/displays/_slicers.py:420: UserWarning: empty mask
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xmin_, xmax_, ymin_, ymax_, zmin_, zmax_ = get_mask_bounds(
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/opt/conda/lib/python3.11/site-packages/mriqc/interfaces/anatomical.py:490: RuntimeWarning: divide by zero encountered in divide
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bg_data[bg_data > 0] = bg_data[bg_data > 0] / bg_spread
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/displays/_slicers.py:420: UserWarning: empty mask
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xmin_, xmax_, ymin_, ymax_, zmin_, zmax_ = get_mask_bounds(
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/opt/conda/lib/python3.11/site-packages/mriqc/interfaces/anatomical.py:490: RuntimeWarning: divide by zero encountered in divide
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bg_data[bg_data > 0] = bg_data[bg_data > 0] / bg_spread
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/displays/_slicers.py:420: UserWarning: empty mask
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xmin_, xmax_, ymin_, ymax_, zmin_, zmax_ = get_mask_bounds(
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/opt/conda/lib/python3.11/site-packages/mriqc/interfaces/anatomical.py:490: RuntimeWarning: divide by zero encountered in divide
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bg_data[bg_data > 0] = bg_data[bg_data > 0] / bg_spread
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/displays/_slicers.py:420: UserWarning: empty mask
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xmin_, xmax_, ymin_, ymax_, zmin_, zmax_ = get_mask_bounds(
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/opt/conda/lib/python3.11/site-packages/mriqc/interfaces/anatomical.py:490: RuntimeWarning: divide by zero encountered in divide
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bg_data[bg_data > 0] = bg_data[bg_data > 0] / bg_spread
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/displays/_slicers.py:420: UserWarning: empty mask
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xmin_, xmax_, ymin_, ymax_, zmin_, zmax_ = get_mask_bounds(
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/opt/conda/lib/python3.11/site-packages/mriqc/interfaces/anatomical.py:490: RuntimeWarning: divide by zero encountered in divide
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bg_data[bg_data > 0] = bg_data[bg_data > 0] / bg_spread
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/displays/_slicers.py:420: UserWarning: empty mask
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xmin_, xmax_, ymin_, ymax_, zmin_, zmax_ = get_mask_bounds(
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:234: RuntimeWarning: divide by zero encountered in scalar divide
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cc_snr_estimates['shell0'] = round(float(in_b0[cc_mask].mean() / std_signal), decimals)
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:257: RuntimeWarning: divide by zero encountered in scalar divide
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float(np.mean(mean_signal_worst / std_signal)), decimals
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:260: RuntimeWarning: divide by zero encountered in scalar divide
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float(np.mean(mean_signal_best / std_signal)), decimals
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:234: RuntimeWarning: divide by zero encountered in scalar divide
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cc_snr_estimates['shell0'] = round(float(in_b0[cc_mask].mean() / std_signal), decimals)
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:257: RuntimeWarning: divide by zero encountered in scalar divide
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float(np.mean(mean_signal_worst / std_signal)), decimals
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:260: RuntimeWarning: divide by zero encountered in scalar divide
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float(np.mean(mean_signal_best / std_signal)), decimals
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:234: RuntimeWarning: divide by zero encountered in scalar divide
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cc_snr_estimates['shell0'] = round(float(in_b0[cc_mask].mean() / std_signal), decimals)
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:257: RuntimeWarning: divide by zero encountered in scalar divide
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float(np.mean(mean_signal_worst / std_signal)), decimals
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:260: RuntimeWarning: divide by zero encountered in scalar divide
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float(np.mean(mean_signal_best / std_signal)), decimals
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:234: RuntimeWarning: divide by zero encountered in scalar divide
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cc_snr_estimates['shell0'] = round(float(in_b0[cc_mask].mean() / std_signal), decimals)
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:257: RuntimeWarning: divide by zero encountered in scalar divide
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float(np.mean(mean_signal_worst / std_signal)), decimals
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:260: RuntimeWarning: divide by zero encountered in scalar divide
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float(np.mean(mean_signal_best / std_signal)), decimals
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:234: RuntimeWarning: divide by zero encountered in scalar divide
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cc_snr_estimates['shell0'] = round(float(in_b0[cc_mask].mean() / std_signal), decimals)
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:257: RuntimeWarning: divide by zero encountered in scalar divide
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float(np.mean(mean_signal_worst / std_signal)), decimals
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/opt/conda/lib/python3.11/site-packages/mriqc/qc/diffusion.py:260: RuntimeWarning: divide by zero encountered in scalar divide
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float(np.mean(mean_signal_best / std_signal)), decimals
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
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ptp = 0.5 * (vmax - vmin)
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