Felix Hoffstaedter
91d4ce0877
=== Do not change lines below ===
{
"chain": [],
"cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . group --no-datalad-get --notrack --verbose --work-dir /tmp",
"dsid": "aae8905a-985f-46fb-91f5-35c772654ddd",
"exit": 0,
"extra_inputs": [
"code/containers/images/bids/bids-mriqc--24.0.2.sing"
],
"inputs": [
"."
],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
82 lines
3.3 KiB
(Stored with Git Annex)
TOML
82 lines
3.3 KiB
(Stored with Git Annex)
TOML
[environment]
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cache_path = "PosixPath('/home/mriqc/.cache/mriqc')"
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cpu_count = 128
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exec_env = "singularity"
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free_mem = 64.4
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freesurfer_home = "/opt/freesurfer"
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overcommit_policy = "heuristic"
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overcommit_limit = "50%"
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nipype_version = "1.8.6"
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synthstrip_path = "PosixPath('/opt/freesurfer/models/synthstrip.1.pt')"
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templateflow_version = "24.2.0"
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total_memory = 251.7049446105957
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version = "24.1.0.dev0+gd5b13cb5.d20240826"
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[execution]
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ants_float = false
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bids_dir = "/data/project/QC_workflow/TMP/ds003416-mriqc/sourcedata/raw"
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bids_dir_datalad = false
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bids_database_dir = "/data/project/QC_workflow/TMP/ds003416-mriqc/.bids_db"
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bids_database_wipe = false
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cwd = "/data/project/QC_workflow/TMP/ds003416-mriqc"
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datalad_get = false
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debug = false
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dry_run = false
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dsname = "<unset>"
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float32 = true
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layout = "BIDS Layout: /data/project/QC_workflow/TMP/ds003416-mriqc/sourcedata/raw"
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log_dir = "/data/project/QC_workflow/TMP/ds003416-mriqc/logs"
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log_level = 20
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modalities = [ "T1w", "T2w", "bold", "dwi",]
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no_sub = false
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notrack = true
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output_dir = "/data/project/QC_workflow/TMP/ds003416-mriqc"
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participant_label = [ "cIIIs01", "cIIIs02", "cIIIs03", "cIIIs04", "cIIIs05", "cIIIs06", "cIIIs07", "cIIIs08", "cIIs00", "cIIs01", "cIIs02", "cIIs03", "cIIs04", "cIVs001", "cIVs002", "cIVs005", "cIVs006", "cIVs007", "cIVs009", "cIVs010", "cIVs012", "cIVs013", "cIVs015", "cIVs016", "cIVs017", "cIVs018", "cIVs020", "cIVs023", "cIVs024", "cIVs025", "cIVs026", "cIVs027", "cIVs028", "cIVs029", "cIVs030", "cIVs031", "cIVs032", "cIVs033", "cIVs034", "cIVs035", "cIVs036", "cIVs037", "cIVs038", "cIVs040", "cIVs041", "cIVs043", "cIVs044", "cIVs045", "cIVs046", "cIVs047", "cIVs048", "cIVs049", "cIVs050", "cIVs051", "cIVs052", "cIVs053", "cIVs054", "cIVs055", "cIVs056", "cIVs057", "cIVs058", "cIVs061", "cIVs062", "cIVs065", "cIVs066", "cIVs067", "cIVs069", "cIVs070", "cIVs071", "cIVs073", "cIVs074", "cIVs075", "cIVs076", "cIVs077", "cIVs078", "cIVs080", "cIVs081", "cIVs082", "cIVs085", "cIVs086", "cIVs088", "cIVs089", "cIVs090", "cIVs092", "cIVs093", "cIVs094", "cIVs095", "cIVs096", "cIVs098", "cIVs100", "cIVs101", "cIVs102", "cIVs104", "cIVs108", "cIVs109", "cIVs110", "cIs1",]
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pdb = false
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reports_only = false
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resource_monitor = false
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run_uuid = "20251010-220620_53f2ee29-807c-42c0-9515-dbc70be4b6f5"
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templateflow_home = "/templateflow"
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upload_strict = false
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verbose_reports = false
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webapi_url = "https://mriqc.nimh.nih.gov:443/api/v1"
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work_dir = "/tmp"
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write_graph = false
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[workflow]
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analysis_level = [ "group",]
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deoblique = false
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despike = false
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fd_thres = 0.2
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fd_radius = 50
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fft_spikes_detector = false
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inputs_path = "PosixPath('/tmp/inputs-20251010-220620_53f2ee29-807c-42c0-9515-dbc70be4b6f5.pkl')"
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min_len_dwi = 7
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min_len_bold = 5
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species = "human"
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template_id = "MNI152NLin2009cAsym"
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[nipype]
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crashfile_format = "txt"
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get_linked_libs = false
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local_hash_check = true
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nprocs = 128
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omp_nthreads = 1
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plugin = "MultiProc"
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remove_node_directories = false
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resource_monitor = false
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stop_on_first_crash = true
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[settings]
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file_path = "/data/project/QC_workflow/TMP/ds003416-mriqc/logs/config-20251010-220620_53f2ee29-807c-42c0-9515-dbc70be4b6f5.toml"
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start_time = 1760133980.0916767
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[execution.bids_filters]
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[workflow.biggest_file_gb]
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t1w = 0.012191176414489746
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dwi = 0.3279538620263338
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[nipype.plugin_args]
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maxtasksperchild = 1
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raise_insufficient = false
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