Felix Hoffstaedter
09646f8d2f
=== Do not change lines below ===
{
"chain": [],
"cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-cIVs094 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
"dsid": "aae8905a-985f-46fb-91f5-35c772654ddd",
"exit": 0,
"extra_inputs": [
"code/containers/images/bids/bids-mriqc--24.0.2.sing"
],
"inputs": [
"sourcedata/raw/sub-cIVs094",
"sourcedata/raw/dataset_description.json"
],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
85 lines
2.3 KiB
(Stored with Git Annex)
TOML
85 lines
2.3 KiB
(Stored with Git Annex)
TOML
[environment]
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cache_path = "PosixPath('/home/mriqc/.cache/mriqc')"
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cpu_count = 32
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exec_env = "singularity"
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free_mem = 33.1
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freesurfer_home = "/opt/freesurfer"
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overcommit_policy = "heuristic"
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overcommit_limit = "50%"
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nipype_version = "1.8.6"
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synthstrip_path = "PosixPath('/opt/freesurfer/models/synthstrip.1.pt')"
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templateflow_version = "24.2.0"
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total_memory = 503.573299407959
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version = "24.1.0.dev0+gd5b13cb5.d20240826"
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[execution]
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ants_float = false
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bids_dir = "/var/lib/condor/execute/dir_3950195/ds/sourcedata/raw"
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bids_dir_datalad = false
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bids_database_dir = "/tmp/.bids_db-20251009-215729_8b5dcb15-45aa-4e65-92e1-68e0d29d2d0e"
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bids_database_wipe = false
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cwd = "/var/lib/condor/execute/dir_3950195/ds"
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datalad_get = false
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debug = false
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dry_run = false
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dsname = "<unset>"
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float32 = true
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layout = "BIDS Layout: /var/lib/condor/execute/dir_3950195/ds/sourcedata/raw"
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log_dir = "/var/lib/condor/execute/dir_3950195/ds/logs"
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log_level = 20
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modalities = [ "T1w", "T2w", "bold", "dwi",]
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no_sub = true
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notrack = false
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output_dir = "/var/lib/condor/execute/dir_3950195/ds"
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participant_label = [ "cIVs094",]
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pdb = false
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reports_only = false
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resource_monitor = false
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run_uuid = "20251009-215729_8b5dcb15-45aa-4e65-92e1-68e0d29d2d0e"
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templateflow_home = "/templateflow"
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upload_strict = false
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verbose_reports = true
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webapi_url = "https://mriqc.nimh.nih.gov:443/api/v1"
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work_dir = "/tmp"
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write_graph = false
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[workflow]
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analysis_level = [ "participant",]
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deoblique = false
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despike = false
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fd_thres = 0.2
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fd_radius = 50
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fft_spikes_detector = false
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inputs_path = "PosixPath('/tmp/inputs-20251009-215729_8b5dcb15-45aa-4e65-92e1-68e0d29d2d0e.pkl')"
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min_len_dwi = 7
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min_len_bold = 5
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species = "human"
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template_id = "MNI152NLin2009cAsym"
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[nipype]
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crashfile_format = "txt"
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get_linked_libs = false
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local_hash_check = true
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memory_gb = 3000
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nprocs = 1
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omp_nthreads = 1
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plugin = "MultiProc"
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remove_node_directories = false
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resource_monitor = false
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stop_on_first_crash = true
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[settings]
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file_path = "/var/lib/condor/execute/dir_3950195/ds/logs/config-20251009-215729_8b5dcb15-45aa-4e65-92e1-68e0d29d2d0e.toml"
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start_time = 1760047049.6867456
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[execution.bids_filters]
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[workflow.biggest_file_gb]
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t1w = 0.006438723765313625
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dwi = 0.013394388370215893
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[nipype.plugin_args]
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maxtasksperchild = 1
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raise_insufficient = false
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n_procs = 1
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memory_gb = 3000.0
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