+ dssource=ria+file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore#aae8905a-985f-46fb-91f5-35c772654ddd + pushgitremote=file:///data/project/QC_workflow/TMP/RIA_QCworkflow/aae/8905a-985f-46fb-91f5-35c772654ddd + subid=sub-cIIs00 + export 'DUCT_OUTPUT_PREFIX=logs/duct/sub-cIIs00_{datetime_filesafe}-{pid}_' + DUCT_OUTPUT_PREFIX='logs/duct/sub-cIIs00_{datetime_filesafe}-{pid}_' + datalad clone ria+file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore#aae8905a-985f-46fb-91f5-35c772654ddd ds [INFO] Attempting a clone into /var/lib/condor/execute/dir_3950062/ds [INFO] Attempting to clone from file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore/aae/8905a-985f-46fb-91f5-35c772654ddd to /var/lib/condor/execute/dir_3950062/ds [INFO] Completed clone attempts for Dataset(/var/lib/condor/execute/dir_3950062/ds) + cd ds + git remote add outputstore file:///data/project/QC_workflow/TMP/RIA_QCworkflow/aae/8905a-985f-46fb-91f5-35c772654ddd + git checkout -b job_sub-cIIs00_10066457 Switched to a new branch 'job_sub-cIIs00_10066457' + datalad get -n sourcedata/raw/ [INFO] Attempting a clone into /var/lib/condor/execute/dir_3950062/ds/sourcedata/raw [INFO] Attempting to clone from file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore/9e5/e9b46-fb3d-48cf-b766-89923247370d to /var/lib/condor/execute/dir_3950062/ds/sourcedata/raw [INFO] Attempting to clone from https://github.com/OpenNeuroDatasets/ds003416.git to /var/lib/condor/execute/dir_3950062/ds/sourcedata/raw [INFO] Start enumerating objects [INFO] Start counting objects [INFO] Start compressing objects [INFO] Start receiving objects [INFO] Start resolving deltas [INFO] Completed clone attempts for Dataset(/var/lib/condor/execute/dir_3950062/ds/sourcedata/raw) [INFO] Remote origin not usable by git-annex; setting annex-ignore [INFO] https://github.com/OpenNeuroDatasets/ds003416.git/config download failed: Not Found [INFO] access to 1 dataset sibling s3-PRIVATE not auto-enabled, enable with: | datalad siblings -d "/var/lib/condor/execute/dir_3950062/ds/sourcedata/raw" enable -s s3-PRIVATE + datalad containers-run -m 'Compute MRIQC for sub-cIIs00' -n bids-mriqc -i sourcedata/raw/sub-cIIs00 -i sourcedata/raw/dataset_description.json mriqc sourcedata/raw . participant --participant-label sub-cIIs00 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports [INFO] Making sure inputs are available (this may take some time) [INFO] Attempting a clone into /var/lib/condor/execute/dir_3950062/ds/code/containers [INFO] Attempting to clone from file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore/b02/e63c2-62c1-11e9-82b0-52540040489c to /var/lib/condor/execute/dir_3950062/ds/code/containers [INFO] Attempting to clone from https://github.com/ReproNim/containers.git to /var/lib/condor/execute/dir_3950062/ds/code/containers [INFO] Start enumerating objects [INFO] Start counting objects [INFO] Start compressing objects [INFO] Start receiving objects [INFO] Start resolving deltas [INFO] Completed clone attempts for Dataset(/var/lib/condor/execute/dir_3950062/ds/code/containers) [INFO] Remote origin not usable by git-annex; setting annex-ignore [INFO] https://github.com/ReproNim/containers.git/config download failed: Not Found [INFO] == Command start (output follows) ===== 2025-10-09T23:59:20+0200 [INFO ] con-duct: duct 0.16.0 is executing 'singularity exec -W /tmp/singtmp.DctCTS -B /var/lib/condor/execute/dir_3950062/ds/code/containers/binds/zoneinfo/UTC:/etc/localtime -B /tmp/singtmp.DctCTS/tmp:/tmp -B /tmp/singtmp.DctCTS/var/tmp:/var/tmp -e -B /var/lib/condor/execute/dir_3950062/ds -H /var/lib/condor/execute/dir_3950062/ds/code/containers/binds/HOME --pwd /var/lib/condor/execute/dir_3950062/ds code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-cIIs00 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports'... 2025-10-09T23:59:20+0200 [INFO ] con-duct: Log files will be written to logs/duct/sub-cIIs00_2025.10.09T23.59.20-4080520_ Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories /opt/conda/lib/python3.11/site-packages/dipy/denoise/noise_estimate.py:252: RuntimeWarning: divide by zero encountered in divide s = sum_m2 / (2 * K * sigma**2) /opt/conda/lib/python3.11/site-packages/dipy/denoise/noise_estimate.py:252: RuntimeWarning: invalid value encountered in divide s = sum_m2 / (2 * K * sigma**2) /opt/conda/lib/python3.11/site-packages/dipy/denoise/noise_estimate.py:252: RuntimeWarning: divide by zero encountered in divide s = sum_m2 / (2 * K * sigma**2) /opt/conda/lib/python3.11/site-packages/dipy/denoise/noise_estimate.py:252: RuntimeWarning: invalid value encountered in divide s = sum_m2 / (2 * K * sigma**2) 0%| | 0/109764 [00:00 job_sub-cIIs00_10066457 + echo SUCCESS