+ dssource=ria+file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore#aae8905a-985f-46fb-91f5-35c772654ddd
+ pushgitremote=file:///data/project/QC_workflow/TMP/RIA_QCworkflow/aae/8905a-985f-46fb-91f5-35c772654ddd
+ subid=sub-cIIIs03
+ export 'DUCT_OUTPUT_PREFIX=logs/duct/sub-cIIIs03_{datetime_filesafe}-{pid}_'
+ DUCT_OUTPUT_PREFIX='logs/duct/sub-cIIIs03_{datetime_filesafe}-{pid}_'
+ datalad clone ria+file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore#aae8905a-985f-46fb-91f5-35c772654ddd ds
[INFO] Attempting a clone into /var/lib/condor/execute/dir_470442/ds 
[INFO] Attempting to clone from file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore/aae/8905a-985f-46fb-91f5-35c772654ddd to /var/lib/condor/execute/dir_470442/ds 
[INFO] Completed clone attempts for Dataset(/var/lib/condor/execute/dir_470442/ds) 
+ cd ds
+ git remote add outputstore file:///data/project/QC_workflow/TMP/RIA_QCworkflow/aae/8905a-985f-46fb-91f5-35c772654ddd
+ git checkout -b job_sub-cIIIs03_10066444
Switched to a new branch 'job_sub-cIIIs03_10066444'
+ datalad get -n sourcedata/raw/
[INFO] Attempting a clone into /var/lib/condor/execute/dir_470442/ds/sourcedata/raw 
[INFO] Attempting to clone from file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore/9e5/e9b46-fb3d-48cf-b766-89923247370d to /var/lib/condor/execute/dir_470442/ds/sourcedata/raw 
[INFO] Attempting to clone from https://github.com/OpenNeuroDatasets/ds003416.git to /var/lib/condor/execute/dir_470442/ds/sourcedata/raw 
[INFO] Start enumerating objects 
[INFO] Start counting objects 
[INFO] Start compressing objects 
[INFO] Start receiving objects 
[INFO] Start resolving deltas 
[INFO] Completed clone attempts for Dataset(/var/lib/condor/execute/dir_470442/ds/sourcedata/raw) 
[INFO] Remote origin not usable by git-annex; setting annex-ignore 
[INFO] https://github.com/OpenNeuroDatasets/ds003416.git/config download failed: Not Found 
[INFO] access to 1 dataset sibling s3-PRIVATE not auto-enabled, enable with:
| 		datalad siblings -d "/var/lib/condor/execute/dir_470442/ds/sourcedata/raw" enable -s s3-PRIVATE 
+ datalad containers-run -m 'Compute MRIQC for sub-cIIIs03' -n bids-mriqc -i sourcedata/raw/sub-cIIIs03 -i sourcedata/raw/dataset_description.json mriqc sourcedata/raw . participant --participant-label sub-cIIIs03 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports
[INFO] Making sure inputs are available (this may take some time) 
[INFO] Attempting a clone into /var/lib/condor/execute/dir_470442/ds/code/containers 
[INFO] Attempting to clone from file:///data/project/QC_workflow/TMP/RIA_QCworkflow/inputstore/b02/e63c2-62c1-11e9-82b0-52540040489c to /var/lib/condor/execute/dir_470442/ds/code/containers 
[INFO] Attempting to clone from https://github.com/ReproNim/containers.git to /var/lib/condor/execute/dir_470442/ds/code/containers 
[INFO] Start enumerating objects 
[INFO] Start counting objects 
[INFO] Start compressing objects 
[INFO] Start receiving objects 
[INFO] Start resolving deltas 
[INFO] Completed clone attempts for Dataset(/var/lib/condor/execute/dir_470442/ds/code/containers) 
[INFO] Remote origin not usable by git-annex; setting annex-ignore 
[INFO] https://github.com/ReproNim/containers.git/config download failed: Not Found 
[INFO] == Command start (output follows) ===== 
2025-10-09T23:56:34+0200 [INFO    ] con-duct: duct 0.16.0 is executing 'singularity exec -W /tmp/singtmp.E1YbvZ -B /var/lib/condor/execute/dir_470442/ds/code/containers/binds/zoneinfo/UTC:/etc/localtime -B /tmp/singtmp.E1YbvZ/tmp:/tmp -B /tmp/singtmp.E1YbvZ/var/tmp:/var/tmp -e -B /var/lib/condor/execute/dir_470442/ds -H /var/lib/condor/execute/dir_470442/ds/code/containers/binds/HOME --pwd /var/lib/condor/execute/dir_470442/ds code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-cIIIs03 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports'...
2025-10-09T23:56:34+0200 [INFO    ] con-duct: Log files will be written to logs/duct/sub-cIIIs03_2025.10.09T23.56.34-590488_
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
/opt/conda/lib/python3.11/site-packages/mriqc/interfaces/anatomical.py:490: RuntimeWarning: divide by zero encountered in divide
  bg_data[bg_data > 0] = bg_data[bg_data > 0] / bg_spread
/opt/conda/lib/python3.11/site-packages/nilearn/plotting/displays/_slicers.py:420: UserWarning: empty mask
  xmin_, xmax_, ymin_, ymax_, zmin_, zmax_ = get_mask_bounds(
/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
  ptp = 0.5 * (vmax - vmin)
/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
  ptp = 0.5 * (vmax - vmin)
/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
  ptp = 0.5 * (vmax - vmin)
/opt/conda/lib/python3.11/site-packages/nilearn/plotting/img_plotting.py:557: RuntimeWarning: overflow encountered in scalar subtract
  ptp = 0.5 * (vmax - vmin)
2025-10-10T00:48:01+0200 [INFO    ] con-duct: Summary:
Exit Code: 0
Command: singularity exec -W /tmp/singtmp.E1YbvZ -B /var/lib/condor/execute/dir_470442/ds/code/containers/binds/zoneinfo/UTC:/etc/localtime -B /tmp/singtmp.E1YbvZ/tmp:/tmp -B /tmp/singtmp.E1YbvZ/var/tmp:/var/tmp -e -B /var/lib/condor/execute/dir_470442/ds -H /var/lib/condor/execute/dir_470442/ds/code/containers/binds/HOME --pwd /var/lib/condor/execute/dir_470442/ds code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-cIIIs03 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports
Log files location: logs/duct/sub-cIIIs03_2025.10.09T23.56.34-590488_
Wall Clock Time: 3086.678 sec
Memory Peak Usage (RSS): 13.4 GB
Memory Average Usage (RSS): 1.5 GB
Virtual Memory Peak Usage (VSZ): 18.9 GB
Virtual Memory Average Usage (VSZ): 4.5 GB
Memory Peak Percentage: 2.30%
Memory Average Percentage: 0.11%
CPU Peak Usage: 311.60%
Average CPU Usage: 86.49%

[INFO] == Command exit (modification check follows) ===== 
+ datalad push --to mriqc_out-storage
[INFO] Determine push target 
[INFO] Push refspecs 
[INFO] Transfer data 
[INFO] Finished push of Dataset(/var/lib/condor/execute/dir_470442/ds) 
+ flock --verbose /data/project/QC_workflow/TMP/ds003416-mriqc/.condor_datalad_lock git push outputstore
To file:///data/project/QC_workflow/TMP/RIA_QCworkflow/aae/8905a-985f-46fb-91f5-35c772654ddd
 * [new branch]      job_sub-cIIIs03_10066444 -> job_sub-cIIIs03_10066444
+ echo SUCCESS