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ds000007-mriqc/logs/duct/sub-09_2025.10.10T00.36.35-2910364_stdout
Felix Hoffstaedter c56b456ff4 [DATALAD RUNCMD] Compute MRIQC for sub-09 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-09 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "df548f99-3fd1-4996-bf19-41ab11367f9a",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-09",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-10-10 01:03:14 +02:00

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------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_2907053/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-10-09 22:36:37 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-10-09 22:36:37 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-10-09 22:36:37 | IMPORTANT | mriqc | Extracting metadata and entities for 4 input runs of modality 'bold'...
2025-10-09 22:36:37 | IMPORTANT | mriqc | File size ('bold'): 0.03|0.03 GB [maximum|average].
2025-10-09 22:36:37 | INFO | mriqc | MRIQC config file: /tmp/config-20251009-223636_ceb706d9-d696-4a23-9f64-8985380a76f1.toml.
2025-10-09 22:36:41 | INFO | matplotlib.font_manager | generated new fontManager
2025-10-09 22:36:42 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-10-09 22:36:42 | INFO | nipype.workflow | Building functional MRIQC workflow for 4 BOLD runs..
2025-10-09 22:36:43 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-10-09 22:36:46 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-10-09 22:36:50 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-10-09 22:36:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/c0dd36a702578131e530ced215fe57f486e2f846/conform".
2025-10-09 22:36:50 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-10-09 22:36:51 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.419363s.
2025-10-09 22:36:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/5931b7362fdfddef2b0eeb34d69caf6861c1e607/pick_echo".
2025-10-09 22:36:52 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-10-09 22:36:52 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000214s.
2025-10-09 22:36:54 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/5931b7362fdfddef2b0eeb34d69caf6861c1e607/provenance/mapflow/_provenance0".
2025-10-09 22:36:54 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:36:54 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.04664s.
2025-10-09 22:36:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/pick_echo".
2025-10-09 22:36:55 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-10-09 22:36:55 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000119s.
2025-10-09 22:36:56 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/provenance/mapflow/_provenance0".
2025-10-09 22:36:56 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:36:56 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.04639s.
2025-10-09 22:36:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/b86ed4a7c19a023c044c676dc369a067e7bf1717/pick_echo".
2025-10-09 22:36:57 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-10-09 22:36:57 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000115s.
2025-10-09 22:36:58 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b86ed4a7c19a023c044c676dc369a067e7bf1717/provenance/mapflow/_provenance0".
2025-10-09 22:36:58 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:36:58 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.045848s.
2025-10-09 22:36:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/3da358edeac2cb90cb19c36d5314f79718929ee6/pick_echo".
2025-10-09 22:36:59 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-10-09 22:36:59 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000115s.
2025-10-09 22:37:00 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3da358edeac2cb90cb19c36d5314f79718929ee6/provenance/mapflow/_provenance0".
2025-10-09 22:37:00 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 22:37:00 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.045233s.
2025-10-09 22:37:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/c0dd36a702578131e530ced215fe57f486e2f846/pre_clip".
2025-10-09 22:37:01 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:37:09 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 8.551537s.
2025-10-09 22:37:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/c0dd36a702578131e530ced215fe57f486e2f846/RotationMask".
2025-10-09 22:37:10 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-10-09 22:37:11 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.468991s.
2025-10-09 22:37:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/PlotMosaicNoise".
2025-10-09 22:37:12 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:37:17 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.124327s.
2025-10-09 22:37:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/5931b7362fdfddef2b0eeb34d69caf6861c1e607/non_steady_state_detector".
2025-10-09 22:37:18 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-10-09 22:37:19 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.181426s.
2025-10-09 22:37:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/non_steady_state_detector".
2025-10-09 22:37:20 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-10-09 22:37:21 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.165058s.
2025-10-09 22:37:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/b86ed4a7c19a023c044c676dc369a067e7bf1717/non_steady_state_detector".
2025-10-09 22:37:22 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-10-09 22:37:23 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.16462s.
2025-10-09 22:37:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/3da358edeac2cb90cb19c36d5314f79718929ee6/non_steady_state_detector".
2025-10-09 22:37:24 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-10-09 22:37:25 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.160471s.
2025-10-09 22:37:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/c0dd36a702578131e530ced215fe57f486e2f846/pre_n4".
2025-10-09 22:37:26 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:38:19 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 51.996405s.
2025-10-09 22:38:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/ds_report_background".
2025-10-09 22:38:20 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:38:20 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.006883s.
2025-10-09 22:38:21 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/5931b7362fdfddef2b0eeb34d69caf6861c1e607/sanitize/mapflow/_sanitize0".
2025-10-09 22:38:21 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 22:38:21 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.03495s.
2025-10-09 22:38:22 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/sanitize/mapflow/_sanitize0".
2025-10-09 22:38:22 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 22:38:22 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.035342s.
2025-10-09 22:38:24 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/b86ed4a7c19a023c044c676dc369a067e7bf1717/sanitize/mapflow/_sanitize0".
2025-10-09 22:38:24 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 22:38:24 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.033721s.
2025-10-09 22:38:26 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/3da358edeac2cb90cb19c36d5314f79718929ee6/sanitize/mapflow/_sanitize0".
2025-10-09 22:38:26 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-10-09 22:38:26 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.034063s.
2025-10-09 22:38:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/c0dd36a702578131e530ced215fe57f486e2f846/synthstrip".
2025-10-09 22:38:28 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:39:07 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 39.015654s.
2025-10-09 22:39:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/5931b7362fdfddef2b0eeb34d69caf6861c1e607/estimate_hm".
2025-10-09 22:39:08 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:40:59 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 110.5375s.
2025-10-09 22:41:00 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/SpikesMask/mapflow/_SpikesMask0".
2025-10-09 22:41:00 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:41:02 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.255212s.
2025-10-09 22:41:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/estimate_hm".
2025-10-09 22:41:02 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:42:54 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 111.425367s.
2025-10-09 22:42:55 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/SpikesMask/mapflow/_SpikesMask0".
2025-10-09 22:42:55 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:42:56 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.2301199999999999s.
2025-10-09 22:42:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/b86ed4a7c19a023c044c676dc369a067e7bf1717/estimate_hm".
2025-10-09 22:42:57 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:44:46 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 109.874556s.
2025-10-09 22:44:47 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/SpikesMask/mapflow/_SpikesMask0".
2025-10-09 22:44:47 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:44:48 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.192123s.
2025-10-09 22:44:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/3da358edeac2cb90cb19c36d5314f79718929ee6/estimate_hm".
2025-10-09 22:44:49 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-10-09 22:46:45 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 116.796512s.
2025-10-09 22:46:47 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/SpikesMask/mapflow/_SpikesMask0".
2025-10-09 22:46:47 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:46:48 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.200556s.
2025-10-09 22:46:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/c0dd36a702578131e530ced215fe57f486e2f846/post_n4".
2025-10-09 22:46:49 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:47:00 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 11.807623s.
2025-10-09 22:47:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/c0dd36a702578131e530ced215fe57f486e2f846/smoothness".
2025-10-09 22:47:01 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:47:03 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 2.259458s.
2025-10-09 22:47:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/PlotMosaicZoomed".
2025-10-09 22:47:05 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:47:07 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 2.6679019999999998s.
2025-10-09 22:47:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/PlotBrainmask".
2025-10-09 22:47:09 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:47:11 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 2.318518s.
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/5931b7362fdfddef2b0eeb34d69caf6861c1e607/apply_hmc/mapflow/_apply_hmc0".
2025-10-09 22:47:13 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:21 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 8.404626s.
2025-10-09 22:47:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/5931b7362fdfddef2b0eeb34d69caf6861c1e607/ComputeFD".
2025-10-09 22:47:23 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-10-09 22:47:23 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.004888s.
2025-10-09 22:47:25 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-10-09 22:47:25 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-10-09 22:47:25 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.37053s.
2025-10-09 22:47:27 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/apply_hmc/mapflow/_apply_hmc0".
2025-10-09 22:47:27 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:35 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 8.413715s.
2025-10-09 22:47:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/ComputeFD".
2025-10-09 22:47:37 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-10-09 22:47:37 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.002114s.
2025-10-09 22:47:39 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-10-09 22:47:39 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-10-09 22:47:39 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.370719s.
2025-10-09 22:47:41 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/b86ed4a7c19a023c044c676dc369a067e7bf1717/apply_hmc/mapflow/_apply_hmc0".
2025-10-09 22:47:41 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:47:49 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 8.424116s.
2025-10-09 22:47:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/b86ed4a7c19a023c044c676dc369a067e7bf1717/ComputeFD".
2025-10-09 22:47:51 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-10-09 22:47:51 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.002063s.
2025-10-09 22:47:53 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-10-09 22:47:53 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-10-09 22:47:53 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.368081s.
2025-10-09 22:47:55 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/3da358edeac2cb90cb19c36d5314f79718929ee6/apply_hmc/mapflow/_apply_hmc0".
2025-10-09 22:47:55 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 22:48:03 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 8.47045s.
2025-10-09 22:48:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/3da358edeac2cb90cb19c36d5314f79718929ee6/ComputeFD".
2025-10-09 22:48:05 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-10-09 22:48:05 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.002092s.
2025-10-09 22:48:07 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-10-09 22:48:07 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-10-09 22:48:07 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.368589s.
2025-10-09 22:48:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/c0dd36a702578131e530ced215fe57f486e2f846/final_masked".
2025-10-09 22:48:09 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 22:48:09 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.205012s.
2025-10-09 22:48:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/SpatialNormalization".
2025-10-09 22:48:11 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:48:11 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:48:57 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-10-09 22:48:57 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:49:07 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:49:08 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-10-09 22:49:08 | INFO | niworkflows | Generating visual report
2025-10-09 22:49:22 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 71.653244s.
2025-10-09 22:49:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/ds_report_zoomed".
2025-10-09 22:49:23 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:23 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004001s.
2025-10-09 22:49:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/ds_report_bmask".
2025-10-09 22:49:23 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:23 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.003715s.
2025-10-09 22:49:23 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/5931b7362fdfddef2b0eeb34d69caf6861c1e607/mean/mapflow/_mean0".
2025-10-09 22:49:23 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-10-09 22:49:24 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.589945s.
2025-10-09 22:49:25 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/5931b7362fdfddef2b0eeb34d69caf6861c1e607/compute_tsnr/mapflow/_compute_tsnr0".
2025-10-09 22:49:25 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-10-09 22:49:25 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.416294s.
2025-10-09 22:49:27 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/5931b7362fdfddef2b0eeb34d69caf6861c1e607/quality/mapflow/_quality0".
2025-10-09 22:49:27 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-10-09 22:49:28 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 1.203945s.
2025-10-09 22:49:29 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/mean/mapflow/_mean0".
2025-10-09 22:49:29 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-10-09 22:49:29 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.523756s.
2025-10-09 22:49:31 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/compute_tsnr/mapflow/_compute_tsnr0".
2025-10-09 22:49:31 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-10-09 22:49:31 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.415967s.
2025-10-09 22:49:33 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/quality/mapflow/_quality0".
2025-10-09 22:49:33 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-10-09 22:49:34 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 1.1999710000000001s.
2025-10-09 22:49:35 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/b86ed4a7c19a023c044c676dc369a067e7bf1717/mean/mapflow/_mean0".
2025-10-09 22:49:35 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-10-09 22:49:35 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.541343s.
2025-10-09 22:49:37 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/b86ed4a7c19a023c044c676dc369a067e7bf1717/compute_tsnr/mapflow/_compute_tsnr0".
2025-10-09 22:49:37 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-10-09 22:49:37 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.435265s.
2025-10-09 22:49:39 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b86ed4a7c19a023c044c676dc369a067e7bf1717/quality/mapflow/_quality0".
2025-10-09 22:49:39 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-10-09 22:49:40 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 1.197579s.
2025-10-09 22:49:41 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/3da358edeac2cb90cb19c36d5314f79718929ee6/mean/mapflow/_mean0".
2025-10-09 22:49:41 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-10-09 22:49:41 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.529789s.
2025-10-09 22:49:43 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/3da358edeac2cb90cb19c36d5314f79718929ee6/compute_tsnr/mapflow/_compute_tsnr0".
2025-10-09 22:49:43 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-10-09 22:49:43 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.432952s.
2025-10-09 22:49:45 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3da358edeac2cb90cb19c36d5314f79718929ee6/quality/mapflow/_quality0".
2025-10-09 22:49:45 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-10-09 22:49:46 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 1.1751s.
2025-10-09 22:49:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/ds_report_norm".
2025-10-09 22:49:47 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:49:47 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.003917s.
2025-10-09 22:49:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/pre_clip".
2025-10-09 22:49:47 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:49:47 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.22143s.
2025-10-09 22:49:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/5931b7362fdfddef2b0eeb34d69caf6861c1e607/SharpenEPI".
2025-10-09 22:49:49 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:49:50 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.4276849999999999s.
2025-10-09 22:49:51 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-10-09 22:49:51 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:49:52 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.797567s.
2025-10-09 22:49:53 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-10-09 22:49:53 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:49:54 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.842s.
2025-10-09 22:49:55 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-10-09 22:49:55 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:49:56 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.842494s.
2025-10-09 22:49:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/pre_clip".
2025-10-09 22:49:57 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:49:57 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.224986s.
2025-10-09 22:49:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/SharpenEPI".
2025-10-09 22:49:59 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:50:00 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.4839769999999999s.
2025-10-09 22:50:01 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-10-09 22:50:01 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:02 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.783164s.
2025-10-09 22:50:03 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-10-09 22:50:03 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:04 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.822342s.
2025-10-09 22:50:05 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-10-09 22:50:05 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:06 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.844013s.
2025-10-09 22:50:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/pre_clip".
2025-10-09 22:50:07 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:50:07 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.250171s.
2025-10-09 22:50:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b86ed4a7c19a023c044c676dc369a067e7bf1717/SharpenEPI".
2025-10-09 22:50:09 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:50:10 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.5071020000000002s.
2025-10-09 22:50:11 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-10-09 22:50:11 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:12 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.812431s.
2025-10-09 22:50:13 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-10-09 22:50:13 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:14 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.855405s.
2025-10-09 22:50:15 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-10-09 22:50:15 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:16 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.871911s.
2025-10-09 22:50:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/pre_clip".
2025-10-09 22:50:17 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-10-09 22:50:17 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.23023s.
2025-10-09 22:50:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3da358edeac2cb90cb19c36d5314f79718929ee6/SharpenEPI".
2025-10-09 22:50:19 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:50:20 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.484772s.
2025-10-09 22:50:21 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-10-09 22:50:21 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:22 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.811207s.
2025-10-09 22:50:23 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-10-09 22:50:23 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:24 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.858476s.
2025-10-09 22:50:25 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-10-09 22:50:25 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:50:26 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.864896s.
2025-10-09 22:50:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/pre_n4".
2025-10-09 22:50:27 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:50:28 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.476688s.
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/ds_report_mean/mapflow/_ds_report_mean0".
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.00409s.
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/ds_report_background/mapflow/_ds_report_background0".
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.00402s.
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004005s.
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/pre_n4".
2025-10-09 22:50:29 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:50:30 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.425893s.
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/ds_report_mean/mapflow/_ds_report_mean0".
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004134s.
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/ds_report_background/mapflow/_ds_report_background0".
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004105s.
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004116s.
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/pre_n4".
2025-10-09 22:50:31 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:50:32 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.4177710000000001s.
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/ds_report_mean/mapflow/_ds_report_mean0".
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004084s.
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/ds_report_background/mapflow/_ds_report_background0".
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.00425s.
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.00415s.
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/pre_n4".
2025-10-09 22:50:33 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:50:34 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.412637s.
2025-10-09 22:50:35 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/ds_report_mean/mapflow/_ds_report_mean0".
2025-10-09 22:50:35 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:50:35 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.00418s.
2025-10-09 22:50:35 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/ds_report_background/mapflow/_ds_report_background0".
2025-10-09 22:50:35 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:50:35 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.007222s.
2025-10-09 22:50:35 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-10-09 22:50:35 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 22:50:35 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004105s.
2025-10-09 22:50:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/synthstrip".
2025-10-09 22:50:35 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:51:08 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 32.877804s.
2025-10-09 22:51:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/synthstrip".
2025-10-09 22:51:09 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:51:42 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 32.869897s.
2025-10-09 22:51:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/synthstrip".
2025-10-09 22:51:43 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:52:16 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 32.813795s.
2025-10-09 22:52:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/synthstrip".
2025-10-09 22:52:17 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-10-09 22:52:50 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 32.888109s.
2025-10-09 22:52:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/post_n4".
2025-10-09 22:52:51 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:52:51 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.689143s.
2025-10-09 22:52:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/5931b7362fdfddef2b0eeb34d69caf6861c1e607/EPI2MNI".
2025-10-09 22:52:53 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:52:53 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:53:12 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:53:12 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/5931b7362fdfddef2b0eeb34d69caf6861c1e607/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/5931b7362fdfddef2b0eeb34d69caf6861c1e607/SharpenEPI/sub-09_task-stopmanual_run-1_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/5931b7362fdfddef2b0eeb34d69caf6861c1e607/SharpenEPI/sub-09_task-stopmanual_run-1_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/5931b7362fdfddef2b0eeb34d69caf6861c1e607/SharpenEPI/sub-09_task-stopmanual_run-1_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:54:10 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:54:10 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/5931b7362fdfddef2b0eeb34d69caf6861c1e607/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:54:10 | INFO | niworkflows | Generating visual report
2025-10-09 22:54:24 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 91.536067s.
2025-10-09 22:54:25 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/5931b7362fdfddef2b0eeb34d69caf6861c1e607/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-10-09 22:54:25 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-10-09 22:54:29 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 4.346844s.
2025-10-09 22:54:31 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/5931b7362fdfddef2b0eeb34d69caf6861c1e607/smoothness/mapflow/_smoothness0".
2025-10-09 22:54:31 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:54:31 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.228296s.
2025-10-09 22:54:33 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/5931b7362fdfddef2b0eeb34d69caf6861c1e607/outliers/mapflow/_outliers0".
2025-10-09 22:54:33 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-10-09 22:54:34 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 0.761131s.
2025-10-09 22:54:35 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/5931b7362fdfddef2b0eeb34d69caf6861c1e607/gcor/mapflow/_gcor0".
2025-10-09 22:54:35 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-10-09 22:54:36 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.088299s.
2025-10-09 22:54:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/dilated_mask".
2025-10-09 22:54:37 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-10-09 22:54:37 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013459s.
2025-10-09 22:54:39 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-10-09 22:54:39 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:54:40 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.84822s.
2025-10-09 22:54:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/PlotBrainmask".
2025-10-09 22:54:41 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:54:42 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.104296s.
2025-10-09 22:54:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/post_n4".
2025-10-09 22:54:43 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:54:44 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.712894s.
2025-10-09 22:54:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/EPI2MNI".
2025-10-09 22:54:45 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:54:45 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:55:04 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/EPI2MNI/stderr.nipype-init).
2025-10-09 22:55:04 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:55:04 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/SharpenEPI/sub-09_task-stopmanual_run-2_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/SharpenEPI/sub-09_task-stopmanual_run-2_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/SharpenEPI/sub-09_task-stopmanual_run-2_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:56:03 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:56:03 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:56:03 | INFO | niworkflows | Generating visual report
2025-10-09 22:56:17 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 91.862571s.
2025-10-09 22:56:17 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-10-09 22:56:17 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-10-09 22:56:21 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 4.35029s.
2025-10-09 22:56:23 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/smoothness/mapflow/_smoothness0".
2025-10-09 22:56:23 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:56:23 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.228718s.
2025-10-09 22:56:25 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/outliers/mapflow/_outliers0".
2025-10-09 22:56:25 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-10-09 22:56:26 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 0.753189s.
2025-10-09 22:56:27 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/gcor/mapflow/_gcor0".
2025-10-09 22:56:27 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-10-09 22:56:28 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 0.997678s.
2025-10-09 22:56:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/dilated_mask".
2025-10-09 22:56:29 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-10-09 22:56:29 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.014586s.
2025-10-09 22:56:31 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-10-09 22:56:31 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:56:32 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.842989s.
2025-10-09 22:56:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/PlotBrainmask".
2025-10-09 22:56:33 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:56:34 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.119946s.
2025-10-09 22:56:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/post_n4".
2025-10-09 22:56:35 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:56:36 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.690858s.
2025-10-09 22:56:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b86ed4a7c19a023c044c676dc369a067e7bf1717/EPI2MNI".
2025-10-09 22:56:37 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:56:37 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:56:56 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b86ed4a7c19a023c044c676dc369a067e7bf1717/EPI2MNI/stderr.nipype-init).
2025-10-09 22:56:56 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:56:56 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b86ed4a7c19a023c044c676dc369a067e7bf1717/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b86ed4a7c19a023c044c676dc369a067e7bf1717/SharpenEPI/sub-09_task-stopword_run-1_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b86ed4a7c19a023c044c676dc369a067e7bf1717/SharpenEPI/sub-09_task-stopword_run-1_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b86ed4a7c19a023c044c676dc369a067e7bf1717/SharpenEPI/sub-09_task-stopword_run-1_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:57:53 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:57:53 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b86ed4a7c19a023c044c676dc369a067e7bf1717/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:57:53 | INFO | niworkflows | Generating visual report
2025-10-09 22:58:07 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 90.565786s.
2025-10-09 22:58:09 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b86ed4a7c19a023c044c676dc369a067e7bf1717/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-10-09 22:58:09 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-10-09 22:58:13 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 4.282693s.
2025-10-09 22:58:15 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b86ed4a7c19a023c044c676dc369a067e7bf1717/smoothness/mapflow/_smoothness0".
2025-10-09 22:58:15 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 22:58:15 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.229998s.
2025-10-09 22:58:17 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b86ed4a7c19a023c044c676dc369a067e7bf1717/outliers/mapflow/_outliers0".
2025-10-09 22:58:17 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-10-09 22:58:18 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 0.749376s.
2025-10-09 22:58:19 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b86ed4a7c19a023c044c676dc369a067e7bf1717/gcor/mapflow/_gcor0".
2025-10-09 22:58:19 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-10-09 22:58:20 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 0.98035s.
2025-10-09 22:58:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/dilated_mask".
2025-10-09 22:58:21 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-10-09 22:58:21 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.014679s.
2025-10-09 22:58:23 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-10-09 22:58:23 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 22:58:24 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.822397s.
2025-10-09 22:58:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/PlotBrainmask".
2025-10-09 22:58:25 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 22:58:26 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.115815s.
2025-10-09 22:58:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/post_n4".
2025-10-09 22:58:27 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-10-09 22:58:28 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.706249s.
2025-10-09 22:58:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3da358edeac2cb90cb19c36d5314f79718929ee6/EPI2MNI".
2025-10-09 22:58:29 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-10-09 22:58:29 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-10-09 22:58:49 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-10-09 22:58:49 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3da358edeac2cb90cb19c36d5314f79718929ee6/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3da358edeac2cb90cb19c36d5314f79718929ee6/SharpenEPI/sub-09_task-stopword_run-2_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3da358edeac2cb90cb19c36d5314f79718929ee6/SharpenEPI/sub-09_task-stopword_run-2_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3da358edeac2cb90cb19c36d5314f79718929ee6/SharpenEPI/sub-09_task-stopword_run-2_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-10-09 22:59:47 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-10-09 22:59:47 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3da358edeac2cb90cb19c36d5314f79718929ee6/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-10-09 22:59:47 | INFO | niworkflows | Generating visual report
2025-10-09 23:00:01 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 91.980952s.
2025-10-09 23:00:03 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3da358edeac2cb90cb19c36d5314f79718929ee6/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-10-09 23:00:03 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-10-09 23:00:07 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 4.117983s.
2025-10-09 23:00:09 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3da358edeac2cb90cb19c36d5314f79718929ee6/smoothness/mapflow/_smoothness0".
2025-10-09 23:00:09 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-10-09 23:00:09 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.259532s.
2025-10-09 23:00:11 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3da358edeac2cb90cb19c36d5314f79718929ee6/outliers/mapflow/_outliers0".
2025-10-09 23:00:11 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-10-09 23:00:12 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 0.702307s.
2025-10-09 23:00:13 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3da358edeac2cb90cb19c36d5314f79718929ee6/gcor/mapflow/_gcor0".
2025-10-09 23:00:13 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-10-09 23:00:14 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 0.982039s.
2025-10-09 23:00:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/dilated_mask".
2025-10-09 23:00:15 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-10-09 23:00:15 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.015625s.
2025-10-09 23:00:17 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-10-09 23:00:17 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-10-09 23:00:18 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.706532s.
2025-10-09 23:00:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/PlotBrainmask".
2025-10-09 23:00:19 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 23:00:20 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.102371s.
2025-10-09 23:00:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/final_masked".
2025-10-09 23:00:21 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 23:00:21 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.021207s.
2025-10-09 23:00:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/5931b7362fdfddef2b0eeb34d69caf6861c1e607/ResampleSegmentation".
2025-10-09 23:00:23 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 23:00:24 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.944199s.
2025-10-09 23:00:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/ds_report_norm".
2025-10-09 23:00:25 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:00:25 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004056s.
2025-10-09 23:00:25 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/5931b7362fdfddef2b0eeb34d69caf6861c1e607/measures/mapflow/_measures0".
2025-10-09 23:00:25 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-10-09 23:00:25 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.40386s.
2025-10-09 23:00:27 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/5931b7362fdfddef2b0eeb34d69caf6861c1e607/timeseries/mapflow/_timeseries0".
2025-10-09 23:00:27 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-10-09 23:00:27 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.019454s.
2025-10-09 23:00:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/subtract_mask".
2025-10-09 23:00:29 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-10-09 23:00:29 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.014219s.
2025-10-09 23:00:31 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-10-09 23:00:31 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:00:31 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.00412s.
2025-10-09 23:00:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/ds_report_bmask".
2025-10-09 23:00:31 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:00:31 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004062s.
2025-10-09 23:00:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/final_masked".
2025-10-09 23:00:31 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 23:00:31 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.021095s.
2025-10-09 23:00:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/ResampleSegmentation".
2025-10-09 23:00:33 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 23:00:34 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.905329s.
2025-10-09 23:00:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/ds_report_norm".
2025-10-09 23:00:35 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:00:35 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004115s.
2025-10-09 23:00:35 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/measures/mapflow/_measures0".
2025-10-09 23:00:35 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-10-09 23:00:35 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.363519s.
2025-10-09 23:00:37 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/timeseries/mapflow/_timeseries0".
2025-10-09 23:00:37 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-10-09 23:00:37 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.013734s.
2025-10-09 23:00:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/subtract_mask".
2025-10-09 23:00:39 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-10-09 23:00:39 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.010764s.
2025-10-09 23:00:41 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-10-09 23:00:41 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:00:41 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004093s.
2025-10-09 23:00:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/ds_report_bmask".
2025-10-09 23:00:41 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:00:41 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.00398s.
2025-10-09 23:00:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/final_masked".
2025-10-09 23:00:41 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 23:00:41 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.021458s.
2025-10-09 23:00:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b86ed4a7c19a023c044c676dc369a067e7bf1717/ResampleSegmentation".
2025-10-09 23:00:43 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 23:00:44 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.884641s.
2025-10-09 23:00:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/ds_report_norm".
2025-10-09 23:00:45 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:00:45 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004033s.
2025-10-09 23:00:45 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b86ed4a7c19a023c044c676dc369a067e7bf1717/measures/mapflow/_measures0".
2025-10-09 23:00:45 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-10-09 23:00:45 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.360338s.
2025-10-09 23:00:47 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b86ed4a7c19a023c044c676dc369a067e7bf1717/timeseries/mapflow/_timeseries0".
2025-10-09 23:00:47 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-10-09 23:00:47 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.00956s.
2025-10-09 23:00:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/subtract_mask".
2025-10-09 23:00:49 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-10-09 23:00:49 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.013465s.
2025-10-09 23:00:51 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-10-09 23:00:51 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:00:51 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004133s.
2025-10-09 23:00:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/ds_report_bmask".
2025-10-09 23:00:51 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:00:51 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004196s.
2025-10-09 23:00:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/final_masked".
2025-10-09 23:00:51 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 23:00:51 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.021249s.
2025-10-09 23:00:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3da358edeac2cb90cb19c36d5314f79718929ee6/ResampleSegmentation".
2025-10-09 23:00:53 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-10-09 23:00:54 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.888782s.
2025-10-09 23:00:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/ds_report_norm".
2025-10-09 23:00:55 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:00:55 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004008s.
2025-10-09 23:00:55 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3da358edeac2cb90cb19c36d5314f79718929ee6/measures/mapflow/_measures0".
2025-10-09 23:00:55 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-10-09 23:00:55 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.381591s.
2025-10-09 23:00:57 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3da358edeac2cb90cb19c36d5314f79718929ee6/timeseries/mapflow/_timeseries0".
2025-10-09 23:00:57 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-10-09 23:00:57 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.009474s.
2025-10-09 23:00:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/subtract_mask".
2025-10-09 23:00:59 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-10-09 23:00:59 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.015531s.
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004213s.
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/ds_report_bmask".
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.003998s.
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/5931b7362fdfddef2b0eeb34d69caf6861c1e607/datasink/mapflow/_datasink0".
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.00049s.
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/5931b7362fdfddef2b0eeb34d69caf6861c1e607/ds_timeseries/mapflow/_ds_timeseries0".
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.003534s.
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/parcels".
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 23:01:01 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.025244s.
2025-10-09 23:01:03 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/datasink/mapflow/_datasink0".
2025-10-09 23:01:03 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-10-09 23:01:03 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000418s.
2025-10-09 23:01:03 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/ds_timeseries/mapflow/_ds_timeseries0".
2025-10-09 23:01:03 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:01:03 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.003474s.
2025-10-09 23:01:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/parcels".
2025-10-09 23:01:03 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 23:01:03 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.016394s.
2025-10-09 23:01:05 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b86ed4a7c19a023c044c676dc369a067e7bf1717/datasink/mapflow/_datasink0".
2025-10-09 23:01:05 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-10-09 23:01:05 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000389s.
2025-10-09 23:01:05 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b86ed4a7c19a023c044c676dc369a067e7bf1717/ds_timeseries/mapflow/_ds_timeseries0".
2025-10-09 23:01:05 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:01:05 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.003533s.
2025-10-09 23:01:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/parcels".
2025-10-09 23:01:05 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 23:01:05 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.014638s.
2025-10-09 23:01:07 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3da358edeac2cb90cb19c36d5314f79718929ee6/datasink/mapflow/_datasink0".
2025-10-09 23:01:07 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-10-09 23:01:07 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000393s.
2025-10-09 23:01:07 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3da358edeac2cb90cb19c36d5314f79718929ee6/ds_timeseries/mapflow/_ds_timeseries0".
2025-10-09 23:01:07 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:01:07 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.003414s.
2025-10-09 23:01:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/parcels".
2025-10-09 23:01:07 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 23:01:07 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.013001s.
2025-10-09 23:01:09 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/BigPlot/mapflow/_BigPlot0".
2025-10-09 23:01:09 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-10-09 23:01:10 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.472096s.
2025-10-09 23:01:11 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/BigPlot/mapflow/_BigPlot0".
2025-10-09 23:01:11 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-10-09 23:01:12 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.423857s.
2025-10-09 23:01:13 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/BigPlot/mapflow/_BigPlot0".
2025-10-09 23:01:13 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-10-09 23:01:15 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.5704s.
2025-10-09 23:01:15 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/BigPlot/mapflow/_BigPlot0".
2025-10-09 23:01:15 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-10-09 23:01:16 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.447856s.
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/5931b7362fdfddef2b0eeb34d69caf6861c1e607/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004057s.
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caecc1590cc3d7c43c5c846446c1d7d380dadf2a/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004139s.
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b86ed4a7c19a023c044c676dc369a067e7bf1717/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004048s.
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3da358edeac2cb90cb19c36d5314f79718929ee6/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.003812s.
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 23:01:17 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 23:01:21 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 3.897972s.
2025-10-09 23:01:23 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 23:01:23 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 23:01:27 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 3.936866s.
2025-10-09 23:01:29 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 23:01:29 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-10-09 23:01:33 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 3.925156s.
2025-10-09 23:01:35 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-10-09 23:01:35 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-10-09 23:01:35 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-10-09 23:01:35 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-10-09 23:01:35 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-10-09 23:01:35 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-10-09 23:01:35 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/c0dd36a702578131e530ced215fe57f486e2f846/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-10-09 23:01:35 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-10-09 23:01:35 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-10-09 23:01:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/c0dd36a702578131e530ced215fe57f486e2f846/Enhance".
2025-10-09 23:01:37 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 23:01:37 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.46974s.
2025-10-09 23:01:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/c0dd36a702578131e530ced215fe57f486e2f846/format_tpm_names".
2025-10-09 23:01:39 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 23:01:40 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 0.847034s.
2025-10-09 23:01:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/c0dd36a702578131e530ced215fe57f486e2f846/Grad".
2025-10-09 23:01:41 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 23:01:42 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 1.3082099999999999s.
2025-10-09 23:01:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/c0dd36a702578131e530ced215fe57f486e2f846/apply_mask".
2025-10-09 23:01:43 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-10-09 23:01:43 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.202174s.
2025-10-09 23:01:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/c0dd36a702578131e530ced215fe57f486e2f846/GradientThreshold".
2025-10-09 23:01:45 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-10-09 23:01:49 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 4.218509s.
2025-10-09 23:01:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/c0dd36a702578131e530ced215fe57f486e2f846/segmentation".
2025-10-09 23:01:51 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-10-09 23:02:30 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 38.692508s.
2025-10-09 23:02:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/c0dd36a702578131e530ced215fe57f486e2f846/ArtifactMask".
2025-10-09 23:02:31 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-10-09 23:02:32 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 1.38761s.
2025-10-09 23:02:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/PlotHeadmask".
2025-10-09 23:02:33 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 23:02:35 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 2.013772s.
2025-10-09 23:02:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/c0dd36a702578131e530ced215fe57f486e2f846/harmonize".
2025-10-09 23:02:37 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-10-09 23:02:38 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.628764s.
2025-10-09 23:02:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/PlotSegmentation".
2025-10-09 23:02:39 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 23:02:41 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 2.296824s.
2025-10-09 23:02:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/c0dd36a702578131e530ced215fe57f486e2f846/provenance".
2025-10-09 23:02:43 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-10-09 23:02:43 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.041498s.
2025-10-09 23:02:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/c0dd36a702578131e530ced215fe57f486e2f846/ComputeQI2".
2025-10-09 23:02:43 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-10-09 23:02:53 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 9.863862s.
2025-10-09 23:02:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotAirmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/PlotAirmask".
2025-10-09 23:02:55 | INFO | nipype.workflow | [Node] Executing "PlotAirmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 23:02:57 | INFO | nipype.workflow | [Node] Finished "PlotAirmask", elapsed time 2.020551s.
2025-10-09 23:02:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotArtmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/PlotArtmask".
2025-10-09 23:02:59 | INFO | nipype.workflow | [Node] Executing "PlotArtmask" <nireports.interfaces.mosaic.PlotContours>
2025-10-09 23:03:01 | INFO | nipype.workflow | [Node] Finished "PlotArtmask", elapsed time 1.979s.
2025-10-09 23:03:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_headmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/ds_report_headmask".
2025-10-09 23:03:03 | INFO | nipype.workflow | [Node] Executing "ds_report_headmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:03:03 | INFO | nipype.workflow | [Node] Finished "ds_report_headmask", elapsed time 0.003773s.
2025-10-09 23:03:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/c0dd36a702578131e530ced215fe57f486e2f846/measures".
2025-10-09 23:03:03 | INFO | nipype.workflow | [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
2025-10-09 23:03:05 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=38.3558)
2025-10-09 23:03:05 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=38.3558)
2025-10-09 23:03:05 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=38.3558)
2025-10-09 23:03:07 | INFO | nipype.workflow | [Node] Finished "measures", elapsed time 4.384254s.
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_segm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/ds_report_segm".
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Executing "ds_report_segm" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Finished "ds_report_segm", elapsed time 0.003824s.
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_noisefit" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/ds_report_noisefit".
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Executing "ds_report_noisefit" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Finished "ds_report_noisefit", elapsed time 0.003762s.
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_airmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/ds_report_airmask".
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Executing "ds_report_airmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Finished "ds_report_airmask", elapsed time 0.003633s.
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_artmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/c0dd36a702578131e530ced215fe57f486e2f846/ds_report_artmask".
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Executing "ds_report_artmask" <mriqc.interfaces.DerivativesDataSink>
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Finished "ds_report_artmask", elapsed time 0.003763s.
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/c0dd36a702578131e530ced215fe57f486e2f846/datasink".
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
2025-10-09 23:03:09 | INFO | nipype.workflow | [Node] Finished "datasink", elapsed time 0.000447s.
2025-10-09 23:03:11 | INFO | nipype.workflow | Generating reports...
2025-10-09 23:03:12 | INFO | nipype.workflow | Report generation finished (5 reports).
2025-10-09 23:03:12 | IMPORTANT | mriqc | Participant level finished successfully averaging 00h 05min 19s per subject.
2025-10-09 23:03:12 | INFO | mriqc | Generating BIDS derivatives metadata.
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MRIQC completed (elapsed time 00h 26min 36s).
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