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Felix Hoffstaedter fd9105ef92 add logs, condor & dag
2025-09-17 12:16:34 +02:00
.bids_db [DATALAD RUNCMD] Compute MRIQC group stats 2025-09-17 09:48:23 +02:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2025-09-17 08:49:32 +02:00
code SLURM submission setup 2025-09-17 08:49:44 +02:00
logs add logs, condor & dag 2025-09-17 12:16:34 +02:00
sourcedata Register ds000002 BIDS dataset as input 2025-09-17 08:49:38 +02:00
sub-01 [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-09-17 09:39:12 +02:00
sub-02 [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-09-17 09:39:08 +02:00
sub-03 [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-09-17 09:39:24 +02:00
sub-04 [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-09-17 09:41:13 +02:00
sub-05 [DATALAD RUNCMD] Compute MRIQC for sub-05 2025-09-17 09:39:54 +02:00
sub-06 [DATALAD RUNCMD] Compute MRIQC for sub-06 2025-09-17 09:39:56 +02:00
sub-07 [DATALAD RUNCMD] Compute MRIQC for sub-07 2025-09-17 09:39:15 +02:00
sub-08 [DATALAD RUNCMD] Compute MRIQC for sub-08 2025-09-17 09:41:06 +02:00
sub-09 [DATALAD RUNCMD] Compute MRIQC for sub-09 2025-09-17 09:40:25 +02:00
sub-10 [DATALAD RUNCMD] Compute MRIQC for sub-10 2025-09-17 09:40:42 +02:00
sub-11 [DATALAD RUNCMD] Compute MRIQC for sub-11 2025-09-17 09:40:22 +02:00
sub-12 [DATALAD RUNCMD] Compute MRIQC for sub-12 2025-09-17 09:40:24 +02:00
sub-13 [DATALAD RUNCMD] Compute MRIQC for sub-13 2025-09-17 09:39:06 +02:00
sub-14 [DATALAD RUNCMD] Compute MRIQC for sub-14 2025-09-17 09:40:47 +02:00
sub-15 [DATALAD RUNCMD] Compute MRIQC for sub-15 2025-09-17 09:39:51 +02:00
sub-16 [DATALAD RUNCMD] Compute MRIQC for sub-16 2025-09-17 09:41:01 +02:00
sub-17 [DATALAD RUNCMD] Compute MRIQC for sub-17 2025-09-17 09:40:53 +02:00
.bidsignore [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-09-17 09:41:13 +02:00
.gitattributes keep .bidsignore, dataset_description.json & tsv files in git 2025-09-17 08:49:23 +02:00
.gitignore SLURM submission setup 2025-09-17 08:49:44 +02:00
.gitmodules Register ds000002 BIDS dataset as input 2025-09-17 08:49:38 +02:00
CHANGELOG.md Apply YODA dataset setup 2025-09-17 08:49:22 +02:00
dataset_description.json [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-09-17 09:41:13 +02:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2025-09-17 09:48:23 +02:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2025-09-17 09:48:23 +02:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2025-09-17 09:48:23 +02:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2025-09-17 09:48:23 +02:00
mclf_run-20250917-075015_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2025-09-17 09:50:16 +02:00
README.md Apply YODA dataset setup 2025-09-17 08:49:22 +02:00
sub-01_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-09-17 09:39:12 +02:00
sub-01_task-deterministicclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-09-17 09:39:12 +02:00
sub-01_task-deterministicclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-09-17 09:39:12 +02:00
sub-01_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-09-17 09:39:12 +02:00
sub-01_task-mixedeventrelatedprobe_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-09-17 09:39:12 +02:00
sub-01_task-probabilisticclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-09-17 09:39:12 +02:00
sub-01_task-probabilisticclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-09-17 09:39:12 +02:00
sub-02_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-09-17 09:39:08 +02:00
sub-02_task-deterministicclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-09-17 09:39:08 +02:00
sub-02_task-deterministicclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-09-17 09:39:08 +02:00
sub-02_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-09-17 09:39:08 +02:00
sub-02_task-mixedeventrelatedprobe_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-09-17 09:39:08 +02:00
sub-02_task-probabilisticclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-09-17 09:39:08 +02:00
sub-02_task-probabilisticclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-09-17 09:39:08 +02:00
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sub-03_task-deterministicclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-09-17 09:39:24 +02:00
sub-03_task-deterministicclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-09-17 09:39:24 +02:00
sub-03_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-09-17 09:39:24 +02:00
sub-03_task-mixedeventrelatedprobe_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-09-17 09:39:24 +02:00
sub-03_task-probabilisticclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-09-17 09:39:24 +02:00
sub-03_task-probabilisticclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-09-17 09:39:24 +02:00
sub-04_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-09-17 09:41:13 +02:00
sub-04_task-deterministicclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-09-17 09:41:13 +02:00
sub-04_task-deterministicclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-09-17 09:41:13 +02:00
sub-04_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-09-17 09:41:13 +02:00
sub-04_task-mixedeventrelatedprobe_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-09-17 09:41:13 +02:00
sub-04_task-probabilisticclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-09-17 09:41:13 +02:00
sub-04_task-probabilisticclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-09-17 09:41:13 +02:00
sub-05_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-05 2025-09-17 09:39:54 +02:00
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sub-05_task-deterministicclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-05 2025-09-17 09:39:54 +02:00
sub-05_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-05 2025-09-17 09:39:54 +02:00
sub-05_task-mixedeventrelatedprobe_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-05 2025-09-17 09:39:54 +02:00
sub-05_task-probabilisticclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-05 2025-09-17 09:39:54 +02:00
sub-05_task-probabilisticclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-05 2025-09-17 09:39:54 +02:00
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sub-06_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-06 2025-09-17 09:39:56 +02:00
sub-06_task-mixedeventrelatedprobe_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-06 2025-09-17 09:39:56 +02:00
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sub-07_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-07 2025-09-17 09:39:15 +02:00
sub-07_task-mixedeventrelatedprobe_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-07 2025-09-17 09:39:15 +02:00
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sub-08_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-08 2025-09-17 09:41:06 +02:00
sub-08_task-mixedeventrelatedprobe_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-08 2025-09-17 09:41:06 +02:00
sub-08_task-probabilisticclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-08 2025-09-17 09:41:06 +02:00
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sub-09_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-09 2025-09-17 09:40:25 +02:00
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sub-10_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-10 2025-09-17 09:40:42 +02:00
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sub-11_task-deterministicclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-11 2025-09-17 09:40:22 +02:00
sub-11_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-11 2025-09-17 09:40:22 +02:00
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sub-11_task-probabilisticclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-11 2025-09-17 09:40:22 +02:00
sub-11_task-probabilisticclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-11 2025-09-17 09:40:22 +02:00
sub-12_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-12 2025-09-17 09:40:24 +02:00
sub-12_task-deterministicclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-12 2025-09-17 09:40:24 +02:00
sub-12_task-deterministicclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-12 2025-09-17 09:40:24 +02:00
sub-12_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-12 2025-09-17 09:40:24 +02:00
sub-12_task-mixedeventrelatedprobe_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-12 2025-09-17 09:40:24 +02:00
sub-12_task-probabilisticclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-12 2025-09-17 09:40:24 +02:00
sub-12_task-probabilisticclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-12 2025-09-17 09:40:24 +02:00
sub-13_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-13 2025-09-17 09:39:06 +02:00
sub-13_task-deterministicclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-13 2025-09-17 09:39:06 +02:00
sub-13_task-deterministicclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-13 2025-09-17 09:39:06 +02:00
sub-13_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-13 2025-09-17 09:39:06 +02:00
sub-13_task-mixedeventrelatedprobe_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-13 2025-09-17 09:39:06 +02:00
sub-13_task-probabilisticclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-13 2025-09-17 09:39:06 +02:00
sub-13_task-probabilisticclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-13 2025-09-17 09:39:06 +02:00
sub-14_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-14 2025-09-17 09:40:47 +02:00
sub-14_task-deterministicclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-14 2025-09-17 09:40:47 +02:00
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sub-16_task-probabilisticclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-16 2025-09-17 09:41:01 +02:00
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sub-17_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-17 2025-09-17 09:40:53 +02:00
sub-17_task-deterministicclassification_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-17 2025-09-17 09:40:53 +02:00
sub-17_task-deterministicclassification_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-17 2025-09-17 09:40:53 +02:00
sub-17_task-mixedeventrelatedprobe_run-01_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-17 2025-09-17 09:40:53 +02:00
sub-17_task-mixedeventrelatedprobe_run-02_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-17 2025-09-17 09:40:53 +02:00
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README.md

Project

Dataset structure

  • All inputs (i.e. building blocks from other sources) are located in inputs/.
  • All custom code is located in code/.