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ds000001-mriqc/logs/duct/sub-14_2025.09.17T08.53.41-1868076stdout
Felix Hoffstaedter 1044504dd6 [DATALAD RUNCMD] Compute MRIQC for sub-14 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-14 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "e0514950-e780-4f0e-b0d2-b16e0a2cf2ea",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-14",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-09-17 09:19:48 +02:00

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------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_1864552/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-09-17 06:53:43 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-09-17 06:53:43 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-09-17 06:53:43 | IMPORTANT | mriqc | Extracting metadata and entities for 3 input runs of modality 'bold'...
2025-09-17 06:53:43 | IMPORTANT | mriqc | File size ('bold'): 0.04|0.04 GB [maximum|average].
2025-09-17 06:53:43 | INFO | mriqc | MRIQC config file: /tmp/config-20250917-065342_0954d8f8-e117-437e-ac49-73098912d3d0.toml.
2025-09-17 06:53:47 | INFO | matplotlib.font_manager | generated new fontManager
2025-09-17 06:53:48 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-09-17 06:53:48 | INFO | nipype.workflow | Building functional MRIQC workflow for 3 BOLD runs..
2025-09-17 06:53:49 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-09-17 06:53:53 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-09-17 06:53:56 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-09-17 06:53:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/conform".
2025-09-17 06:53:57 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-09-17 06:53:57 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.260775s.
2025-09-17 06:53:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/pick_echo".
2025-09-17 06:53:59 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:53:59 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000109s.
2025-09-17 06:54:01 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/provenance/mapflow/_provenance0".
2025-09-17 06:54:01 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:54:01 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.070364s.
2025-09-17 06:54:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/pick_echo".
2025-09-17 06:54:01 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:54:01 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 8.7e-05s.
2025-09-17 06:54:03 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/provenance/mapflow/_provenance0".
2025-09-17 06:54:03 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:54:03 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.069332s.
2025-09-17 06:54:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/pick_echo".
2025-09-17 06:54:03 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:54:03 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000104s.
2025-09-17 06:54:05 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/provenance/mapflow/_provenance0".
2025-09-17 06:54:05 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:54:05 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.06932s.
2025-09-17 06:54:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/pre_clip".
2025-09-17 06:54:05 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 06:54:12 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 7.227188s.
2025-09-17 06:54:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/RotationMask".
2025-09-17 06:54:13 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-09-17 06:54:13 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.317542s.
2025-09-17 06:54:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicNoise".
2025-09-17 06:54:15 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 06:54:18 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 3.750522s.
2025-09-17 06:54:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/non_steady_state_detector".
2025-09-17 06:54:19 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:54:19 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.198999s.
2025-09-17 06:54:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/non_steady_state_detector".
2025-09-17 06:54:21 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:54:21 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.183641s.
2025-09-17 06:54:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/non_steady_state_detector".
2025-09-17 06:54:23 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:54:23 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.182302s.
2025-09-17 06:54:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/pre_n4".
2025-09-17 06:54:25 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 06:55:17 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 52.216746s.
2025-09-17 06:55:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/ds_report_background".
2025-09-17 06:55:19 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 06:55:19 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.007042s.
2025-09-17 06:55:19 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/sanitize/mapflow/_sanitize0".
2025-09-17 06:55:19 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:55:21 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.009036s.
2025-09-17 06:55:23 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/sanitize/mapflow/_sanitize0".
2025-09-17 06:55:23 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:55:25 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 1.998146s.
2025-09-17 06:55:27 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/sanitize/mapflow/_sanitize0".
2025-09-17 06:55:27 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:55:29 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.005655s.
2025-09-17 06:55:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/synthstrip".
2025-09-17 06:55:31 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 06:56:10 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 39.279551s.
2025-09-17 06:56:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/estimate_hm".
2025-09-17 06:56:11 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 06:59:16 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 185.15438s.
2025-09-17 06:59:17 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 06:59:17 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 06:59:18 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.391494s.
2025-09-17 06:59:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/estimate_hm".
2025-09-17 06:59:19 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:02:22 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 183.806505s.
2025-09-17 07:02:23 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:02:23 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:02:24 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.360125s.
2025-09-17 07:02:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/estimate_hm".
2025-09-17 07:02:25 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:05:29 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 184.545887s.
2025-09-17 07:05:31 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:05:31 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:05:32 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.3686150000000001s.
2025-09-17 07:05:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/post_n4".
2025-09-17 07:05:33 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:05:44 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 11.724641s.
2025-09-17 07:05:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/smoothness".
2025-09-17 07:05:45 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:05:47 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 2.24702s.
2025-09-17 07:05:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicZoomed".
2025-09-17 07:05:49 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:05:52 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.128176s.
2025-09-17 07:05:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/PlotBrainmask".
2025-09-17 07:05:53 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:05:55 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 2.225032s.
2025-09-17 07:05:57 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:05:57 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:06:10 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.338191s.
2025-09-17 07:06:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/ComputeFD".
2025-09-17 07:06:11 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:06:11 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.005704s.
2025-09-17 07:06:13 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:06:13 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:06:13 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.615178s.
2025-09-17 07:06:15 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:06:15 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:06:28 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.363903s.
2025-09-17 07:06:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/ComputeFD".
2025-09-17 07:06:29 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:06:29 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.005777s.
2025-09-17 07:06:31 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:06:31 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:06:31 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.614542s.
2025-09-17 07:06:33 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:06:33 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:06:46 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.32191s.
2025-09-17 07:06:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/ComputeFD".
2025-09-17 07:06:47 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:06:47 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.005905s.
2025-09-17 07:06:49 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:06:49 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:06:49 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.609184s.
2025-09-17 07:06:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/final_masked".
2025-09-17 07:06:51 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:06:51 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.180168s.
2025-09-17 07:06:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization".
2025-09-17 07:06:53 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:06:53 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:07:42 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-09-17 07:07:42 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:07:53 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:07:54 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-09-17 07:07:54 | INFO | niworkflows | Generating visual report
2025-09-17 07:08:08 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 75.200797s.
2025-09-17 07:08:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/ds_report_zoomed".
2025-09-17 07:08:09 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:08:09 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004245s.
2025-09-17 07:08:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/ds_report_bmask".
2025-09-17 07:08:09 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:08:09 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.003747s.
2025-09-17 07:08:09 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/mean/mapflow/_mean0".
2025-09-17 07:08:09 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:08:10 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.813571s.
2025-09-17 07:08:11 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:08:11 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:08:11 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.634335s.
2025-09-17 07:08:13 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/quality/mapflow/_quality0".
2025-09-17 07:08:13 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:08:15 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 1.893229s.
2025-09-17 07:08:17 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/mean/mapflow/_mean0".
2025-09-17 07:08:17 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:08:18 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.798949s.
2025-09-17 07:08:19 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:08:19 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:08:19 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.628809s.
2025-09-17 07:08:21 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/quality/mapflow/_quality0".
2025-09-17 07:08:21 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:08:23 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 1.878412s.
2025-09-17 07:08:23 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/mean/mapflow/_mean0".
2025-09-17 07:08:23 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:08:24 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.803953s.
2025-09-17 07:08:25 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:08:25 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:08:25 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.600936s.
2025-09-17 07:08:27 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/quality/mapflow/_quality0".
2025-09-17 07:08:27 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:08:29 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 1.898832s.
2025-09-17 07:08:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/ds_report_norm".
2025-09-17 07:08:31 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:08:31 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004333s.
2025-09-17 07:08:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/pre_clip".
2025-09-17 07:08:31 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:08:31 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.226407s.
2025-09-17 07:08:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/SharpenEPI".
2025-09-17 07:08:33 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:08:34 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.443394s.
2025-09-17 07:08:35 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:08:35 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:36 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.799964s.
2025-09-17 07:08:37 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:08:37 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:38 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.841886s.
2025-09-17 07:08:39 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:08:39 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:40 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.854047s.
2025-09-17 07:08:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/pre_clip".
2025-09-17 07:08:41 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:08:41 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.228047s.
2025-09-17 07:08:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/SharpenEPI".
2025-09-17 07:08:43 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:08:44 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.519835s.
2025-09-17 07:08:45 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:08:45 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:46 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.809364s.
2025-09-17 07:08:47 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:08:47 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:48 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.847764s.
2025-09-17 07:08:49 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:08:49 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:50 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.859915s.
2025-09-17 07:08:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/pre_clip".
2025-09-17 07:08:51 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:08:51 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.231652s.
2025-09-17 07:08:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/SharpenEPI".
2025-09-17 07:08:53 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:08:54 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.496488s.
2025-09-17 07:08:55 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:08:55 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:56 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.785528s.
2025-09-17 07:08:57 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:08:57 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:58 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.82521s.
2025-09-17 07:08:59 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:08:59 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:09:00 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.834219s.
2025-09-17 07:09:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/pre_n4".
2025-09-17 07:09:01 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:09:02 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.486536s.
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.0041s.
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004102s.
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004033s.
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/pre_n4".
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:09:05 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.4301650000000001s.
2025-09-17 07:09:05 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:09:05 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:05 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004061s.
2025-09-17 07:09:05 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:09:05 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:05 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004021s.
2025-09-17 07:09:05 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:09:05 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:05 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004022s.
2025-09-17 07:09:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/pre_n4".
2025-09-17 07:09:05 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:09:07 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.42379s.
2025-09-17 07:09:07 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:09:07 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:07 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004149s.
2025-09-17 07:09:07 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:09:07 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:07 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004023s.
2025-09-17 07:09:07 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:09:07 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:07 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.009818s.
2025-09-17 07:09:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/synthstrip".
2025-09-17 07:09:07 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:09:51 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 43.69056s.
2025-09-17 07:09:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/synthstrip".
2025-09-17 07:09:53 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:10:37 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 43.817776s.
2025-09-17 07:10:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/synthstrip".
2025-09-17 07:10:37 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:11:21 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 43.926094s.
2025-09-17 07:11:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/post_n4".
2025-09-17 07:11:23 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.690366s.
2025-09-17 07:11:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/EPI2MNI".
2025-09-17 07:11:25 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:11:25 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:11:46 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/EPI2MNI/stderr.nipype-init).
2025-09-17 07:11:46 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:11:46 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/SharpenEPI/sub-14_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/SharpenEPI/sub-14_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/SharpenEPI/sub-14_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:12:44 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:12:44 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:12:44 | INFO | niworkflows | Generating visual report
2025-09-17 07:12:58 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.917228s.
2025-09-17 07:12:59 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:12:59 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:13:04 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.091471s.
2025-09-17 07:13:05 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/smoothness/mapflow/_smoothness0".
2025-09-17 07:13:05 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:13:05 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.249116s.
2025-09-17 07:13:07 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/outliers/mapflow/_outliers0".
2025-09-17 07:13:07 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:13:08 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.023133s.
2025-09-17 07:13:09 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/gcor/mapflow/_gcor0".
2025-09-17 07:13:09 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:13:11 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.6194739999999999s.
2025-09-17 07:13:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/dilated_mask".
2025-09-17 07:13:11 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:13:11 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.008765s.
2025-09-17 07:13:13 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:13:13 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:13:14 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.807852s.
2025-09-17 07:13:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/PlotBrainmask".
2025-09-17 07:13:15 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:13:16 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.1329069999999999s.
2025-09-17 07:13:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/post_n4".
2025-09-17 07:13:17 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:13:18 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.700582s.
2025-09-17 07:13:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/EPI2MNI".
2025-09-17 07:13:19 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:13:19 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:13:41 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:13:41 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/SharpenEPI/sub-14_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/SharpenEPI/sub-14_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/SharpenEPI/sub-14_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:14:38 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:14:38 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:14:38 | INFO | niworkflows | Generating visual report
2025-09-17 07:14:52 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 93.047505s.
2025-09-17 07:14:53 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:14:53 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:14:58 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.036965s.
2025-09-17 07:14:59 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/smoothness/mapflow/_smoothness0".
2025-09-17 07:14:59 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:14:59 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.242838s.
2025-09-17 07:15:01 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/outliers/mapflow/_outliers0".
2025-09-17 07:15:01 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:15:02 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.0048s.
2025-09-17 07:15:03 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/gcor/mapflow/_gcor0".
2025-09-17 07:15:03 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:15:05 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.54851s.
2025-09-17 07:15:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/dilated_mask".
2025-09-17 07:15:05 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:15:05 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013164s.
2025-09-17 07:15:07 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:15:07 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:15:08 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.807865s.
2025-09-17 07:15:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/PlotBrainmask".
2025-09-17 07:15:09 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:15:10 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.136804s.
2025-09-17 07:15:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/post_n4".
2025-09-17 07:15:11 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:15:12 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.704814s.
2025-09-17 07:15:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/EPI2MNI".
2025-09-17 07:15:13 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:15:13 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:15:36 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:15:36 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/SharpenEPI/sub-14_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/SharpenEPI/sub-14_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/SharpenEPI/sub-14_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:16:34 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:16:34 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:16:34 | INFO | niworkflows | Generating visual report
2025-09-17 07:16:48 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 94.92311s.
2025-09-17 07:16:49 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:16:49 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:16:54 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.087341s.
2025-09-17 07:16:55 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/smoothness/mapflow/_smoothness0".
2025-09-17 07:16:55 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:16:55 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.247002s.
2025-09-17 07:16:57 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/outliers/mapflow/_outliers0".
2025-09-17 07:16:57 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:16:58 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.011122s.
2025-09-17 07:16:59 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/gcor/mapflow/_gcor0".
2025-09-17 07:16:59 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:17:01 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.544046s.
2025-09-17 07:17:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/dilated_mask".
2025-09-17 07:17:01 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:17:01 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013957s.
2025-09-17 07:17:03 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:17:03 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:17:04 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.847495s.
2025-09-17 07:17:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/PlotBrainmask".
2025-09-17 07:17:05 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:17:06 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.144504s.
2025-09-17 07:17:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/final_masked".
2025-09-17 07:17:07 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:17:07 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.019548s.
2025-09-17 07:17:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/ResampleSegmentation".
2025-09-17 07:17:09 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:17:10 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.932797s.
2025-09-17 07:17:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/ds_report_norm".
2025-09-17 07:17:11 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:11 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004187s.
2025-09-17 07:17:11 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/measures/mapflow/_measures0".
2025-09-17 07:17:11 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:17:12 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.571993s.
2025-09-17 07:17:13 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/timeseries/mapflow/_timeseries0".
2025-09-17 07:17:13 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:17:13 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.019697s.
2025-09-17 07:17:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/subtract_mask".
2025-09-17 07:17:15 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:17:15 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.013314s.
2025-09-17 07:17:17 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:17:17 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:17 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004008s.
2025-09-17 07:17:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/ds_report_bmask".
2025-09-17 07:17:17 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:17 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004127s.
2025-09-17 07:17:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/final_masked".
2025-09-17 07:17:17 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:17:17 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.01898s.
2025-09-17 07:17:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/ResampleSegmentation".
2025-09-17 07:17:19 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:17:20 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.90067s.
2025-09-17 07:17:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/ds_report_norm".
2025-09-17 07:17:21 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:21 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004126s.
2025-09-17 07:17:21 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/measures/mapflow/_measures0".
2025-09-17 07:17:21 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:17:22 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.530522s.
2025-09-17 07:17:23 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/timeseries/mapflow/_timeseries0".
2025-09-17 07:17:23 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:17:23 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.014092s.
2025-09-17 07:17:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/subtract_mask".
2025-09-17 07:17:25 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:17:25 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.013512s.
2025-09-17 07:17:27 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:17:27 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:27 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004172s.
2025-09-17 07:17:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/ds_report_bmask".
2025-09-17 07:17:27 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:27 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004014s.
2025-09-17 07:17:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/final_masked".
2025-09-17 07:17:27 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:17:27 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.016937s.
2025-09-17 07:17:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/ResampleSegmentation".
2025-09-17 07:17:29 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:17:30 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.899649s.
2025-09-17 07:17:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/ds_report_norm".
2025-09-17 07:17:31 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:31 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004166s.
2025-09-17 07:17:31 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/measures/mapflow/_measures0".
2025-09-17 07:17:31 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:17:32 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.543124s.
2025-09-17 07:17:33 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/timeseries/mapflow/_timeseries0".
2025-09-17 07:17:33 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:17:33 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.015596s.
2025-09-17 07:17:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/subtract_mask".
2025-09-17 07:17:35 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:17:35 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.013057s.
2025-09-17 07:17:37 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:17:37 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:37 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004043s.
2025-09-17 07:17:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/ds_report_bmask".
2025-09-17 07:17:37 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:37 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004021s.
2025-09-17 07:17:37 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/datasink/mapflow/_datasink0".
2025-09-17 07:17:37 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:17:37 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000426s.
2025-09-17 07:17:37 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:17:37 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:37 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.003662s.
2025-09-17 07:17:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/parcels".
2025-09-17 07:17:38 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:17:38 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.014609s.
2025-09-17 07:17:39 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/datasink/mapflow/_datasink0".
2025-09-17 07:17:39 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:17:39 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000338s.
2025-09-17 07:17:39 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:17:39 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:39 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.003577s.
2025-09-17 07:17:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/parcels".
2025-09-17 07:17:39 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:17:39 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.013941s.
2025-09-17 07:17:41 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/datasink/mapflow/_datasink0".
2025-09-17 07:17:41 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:17:41 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000323s.
2025-09-17 07:17:41 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:17:41 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:41 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.003539s.
2025-09-17 07:17:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/parcels".
2025-09-17 07:17:41 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:17:41 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.012714s.
2025-09-17 07:17:43 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:17:43 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:17:47 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 3.859545s.
2025-09-17 07:17:47 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:17:47 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:17:51 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 3.814313s.
2025-09-17 07:17:51 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:17:51 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:17:55 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 3.892784s.
2025-09-17 07:17:57 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/67f4af9dc7e59a05970e62c155decdf12c4e9d2b/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:17:57 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:57 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004029s.
2025-09-17 07:17:57 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3d9e4167f9d66b2e837e4b9aa4ab9ffd0c029e6b/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:17:57 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:57 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004102s.
2025-09-17 07:17:57 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/98c6e7a47d2b25d32bfc1f703d6b937c04163aa7/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:17:57 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:57 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.003944s.
2025-09-17 07:17:57 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:17:57 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:18:01 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 4.044625s.
2025-09-17 07:18:03 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:18:03 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:18:07 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 4.092678s.
2025-09-17 07:18:09 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:18:09 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:18:13 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 4.076047s.
2025-09-17 07:18:15 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:18:15 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-09-17 07:18:15 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-09-17 07:18:15 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:18:15 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-09-17 07:18:15 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-09-17 07:18:15 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:18:15 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-09-17 07:18:15 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-09-17 07:18:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/Enhance".
2025-09-17 07:18:17 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:18:18 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.435861s.
2025-09-17 07:18:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/format_tpm_names".
2025-09-17 07:18:19 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:18:20 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 0.82584s.
2025-09-17 07:18:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/Grad".
2025-09-17 07:18:21 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:18:22 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 1.312134s.
2025-09-17 07:18:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/apply_mask".
2025-09-17 07:18:23 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:18:23 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.180026s.
2025-09-17 07:18:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/GradientThreshold".
2025-09-17 07:18:25 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:18:29 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 4.191582s.
2025-09-17 07:18:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/segmentation".
2025-09-17 07:18:31 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-09-17 07:19:11 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 39.462176s.
2025-09-17 07:19:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/ArtifactMask".
2025-09-17 07:19:11 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 1.30117s.
2025-09-17 07:19:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/PlotHeadmask".
2025-09-17 07:19:13 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:19:15 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 1.8587099999999999s.
2025-09-17 07:19:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/harmonize".
2025-09-17 07:19:15 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.595869s.
2025-09-17 07:19:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/PlotSegmentation".
2025-09-17 07:19:17 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:19:19 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 2.105529s.
2025-09-17 07:19:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/provenance".
2025-09-17 07:19:21 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 07:19:21 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.036635s.
2025-09-17 07:19:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/ComputeQI2".
2025-09-17 07:19:21 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 11.088627s.
2025-09-17 07:19:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotAirmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/PlotAirmask".
2025-09-17 07:19:33 | INFO | nipype.workflow | [Node] Executing "PlotAirmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:19:35 | INFO | nipype.workflow | [Node] Finished "PlotAirmask", elapsed time 1.861425s.
2025-09-17 07:19:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotArtmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/PlotArtmask".
2025-09-17 07:19:35 | INFO | nipype.workflow | [Node] Executing "PlotArtmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:19:37 | INFO | nipype.workflow | [Node] Finished "PlotArtmask", elapsed time 1.876461s.
2025-09-17 07:19:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_headmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/ds_report_headmask".
2025-09-17 07:19:37 | INFO | nipype.workflow | [Node] Executing "ds_report_headmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:37 | INFO | nipype.workflow | [Node] Finished "ds_report_headmask", elapsed time 0.00375s.
2025-09-17 07:19:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/measures".
2025-09-17 07:19:37 | INFO | nipype.workflow | [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
2025-09-17 07:19:39 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=15.1169)
2025-09-17 07:19:39 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=15.1169)
2025-09-17 07:19:39 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=15.1169)
2025-09-17 07:19:41 | INFO | nipype.workflow | [Node] Finished "measures", elapsed time 4.113864s.
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_segm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/ds_report_segm".
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Executing "ds_report_segm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Finished "ds_report_segm", elapsed time 0.003822s.
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_noisefit" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/ds_report_noisefit".
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Executing "ds_report_noisefit" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Finished "ds_report_noisefit", elapsed time 0.003795s.
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_airmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/ds_report_airmask".
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Executing "ds_report_airmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Finished "ds_report_airmask", elapsed time 0.00368s.
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_artmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/ds_report_artmask".
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Executing "ds_report_artmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Finished "ds_report_artmask", elapsed time 0.003682s.
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject14.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1864552..ds..sourcedata..raw..sub-14..anat..sub-14_T1w.nii.gz_metadata_FileSize0.005044282414019108.FileSizeUnitsGB.NumberOfVolumes1/datasink".
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Finished "datasink", elapsed time 0.000369s.
2025-09-17 07:19:45 | INFO | nipype.workflow | Generating reports...
2025-09-17 07:19:46 | INFO | nipype.workflow | Report generation finished (4 reports).
2025-09-17 07:19:46 | IMPORTANT | mriqc | Participant level finished successfully averaging 00h 06min 30s per subject.
2025-09-17 07:19:46 | INFO | mriqc | Generating BIDS derivatives metadata.
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MRIQC completed (elapsed time 00h 26min 03s).
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