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ds000001-mriqc/logs/duct/sub-13_2025.09.17T08.55.52-643734stdout
Felix Hoffstaedter ac48c3ba88 [DATALAD RUNCMD] Compute MRIQC for sub-13 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-13 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "e0514950-e780-4f0e-b0d2-b16e0a2cf2ea",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-13",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-09-17 09:21:09 +02:00

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------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_637256/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-09-17 06:55:54 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-09-17 06:55:54 | IMPORTANT | mriqc | File size ('t1w'): 0.00|0.00 GB [maximum|average].
2025-09-17 06:55:54 | IMPORTANT | mriqc | Extracting metadata and entities for 3 input runs of modality 'bold'...
2025-09-17 06:55:54 | IMPORTANT | mriqc | File size ('bold'): 0.04|0.04 GB [maximum|average].
2025-09-17 06:55:54 | INFO | mriqc | MRIQC config file: /tmp/config-20250917-065552_97bc1e0e-90d3-48be-9619-4f84e3630a90.toml.
2025-09-17 06:55:58 | INFO | matplotlib.font_manager | generated new fontManager
2025-09-17 06:55:59 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-09-17 06:56:00 | INFO | nipype.workflow | Building functional MRIQC workflow for 3 BOLD runs..
2025-09-17 06:56:00 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-09-17 06:56:05 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-09-17 06:56:09 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-09-17 06:56:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/conform".
2025-09-17 06:56:09 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-09-17 06:56:09 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.273254s.
2025-09-17 06:56:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/ebdec058877b48bb40c9a264f6def0f2468f668b/pick_echo".
2025-09-17 06:56:11 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:11 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000142s.
2025-09-17 06:56:13 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/ebdec058877b48bb40c9a264f6def0f2468f668b/provenance/mapflow/_provenance0".
2025-09-17 06:56:13 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:13 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.070671s.
2025-09-17 06:56:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/pick_echo".
2025-09-17 06:56:13 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:13 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000112s.
2025-09-17 06:56:15 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/provenance/mapflow/_provenance0".
2025-09-17 06:56:15 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:15 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.070419s.
2025-09-17 06:56:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/dee7a7a78935ec6cfffd99482525b938aa0f0470/pick_echo".
2025-09-17 06:56:15 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:15 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.00013s.
2025-09-17 06:56:17 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/dee7a7a78935ec6cfffd99482525b938aa0f0470/provenance/mapflow/_provenance0".
2025-09-17 06:56:17 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:17 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.07148s.
2025-09-17 06:56:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/pre_clip".
2025-09-17 06:56:17 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 06:56:25 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 7.4185929999999995s.
2025-09-17 06:56:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/RotationMask".
2025-09-17 06:56:25 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-09-17 06:56:25 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.378056s.
2025-09-17 06:56:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicNoise".
2025-09-17 06:56:27 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 06:56:31 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.250539s.
2025-09-17 06:56:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/ebdec058877b48bb40c9a264f6def0f2468f668b/non_steady_state_detector".
2025-09-17 06:56:33 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:56:33 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.175856s.
2025-09-17 06:56:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/non_steady_state_detector".
2025-09-17 06:56:35 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:56:35 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.17425s.
2025-09-17 06:56:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/dee7a7a78935ec6cfffd99482525b938aa0f0470/non_steady_state_detector".
2025-09-17 06:56:37 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:56:37 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.174899s.
2025-09-17 06:56:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/pre_n4".
2025-09-17 06:56:39 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 06:57:40 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 60.411376s.
2025-09-17 06:57:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/ds_report_background".
2025-09-17 06:57:41 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 06:57:41 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.008091s.
2025-09-17 06:57:41 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/ebdec058877b48bb40c9a264f6def0f2468f668b/sanitize/mapflow/_sanitize0".
2025-09-17 06:57:41 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:57:41 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.037437s.
2025-09-17 06:57:43 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/sanitize/mapflow/_sanitize0".
2025-09-17 06:57:43 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:57:43 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.037171s.
2025-09-17 06:57:45 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/dee7a7a78935ec6cfffd99482525b938aa0f0470/sanitize/mapflow/_sanitize0".
2025-09-17 06:57:45 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:57:45 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.035906s.
2025-09-17 06:57:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/synthstrip".
2025-09-17 06:57:47 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 06:58:22 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 35.189923s.
2025-09-17 06:58:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/ebdec058877b48bb40c9a264f6def0f2468f668b/estimate_hm".
2025-09-17 06:58:23 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:01:12 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 169.291334s.
2025-09-17 07:01:13 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:01:13 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:01:15 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.385925s.
2025-09-17 07:01:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/estimate_hm".
2025-09-17 07:01:15 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:04:04 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 168.694116s.
2025-09-17 07:04:05 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:04:05 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:04:07 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.355831s.
2025-09-17 07:04:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/dee7a7a78935ec6cfffd99482525b938aa0f0470/estimate_hm".
2025-09-17 07:04:07 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:06:56 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 168.323816s.
2025-09-17 07:06:57 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:06:57 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:06:59 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.3605990000000001s.
2025-09-17 07:06:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/post_n4".
2025-09-17 07:06:59 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:07:11 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 12.212574s.
2025-09-17 07:07:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/smoothness".
2025-09-17 07:07:13 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:07:15 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 1.9462169999999999s.
2025-09-17 07:07:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicZoomed".
2025-09-17 07:07:17 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:07:21 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.393676s.
2025-09-17 07:07:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/PlotBrainmask".
2025-09-17 07:07:21 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:07:23 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 2.170843s.
2025-09-17 07:07:25 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/ebdec058877b48bb40c9a264f6def0f2468f668b/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:07:25 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:07:39 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.484022s.
2025-09-17 07:07:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/ebdec058877b48bb40c9a264f6def0f2468f668b/ComputeFD".
2025-09-17 07:07:39 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:07:39 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.006113s.
2025-09-17 07:07:41 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:07:41 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:07:42 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.640704s.
2025-09-17 07:07:43 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:07:43 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:07:57 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.618482s.
2025-09-17 07:07:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/ComputeFD".
2025-09-17 07:07:57 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:07:57 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.006116s.
2025-09-17 07:07:59 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:07:59 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:08:00 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.623868s.
2025-09-17 07:08:01 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/dee7a7a78935ec6cfffd99482525b938aa0f0470/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:08:01 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:15 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.738102s.
2025-09-17 07:08:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/dee7a7a78935ec6cfffd99482525b938aa0f0470/ComputeFD".
2025-09-17 07:08:15 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:08:15 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.00299s.
2025-09-17 07:08:17 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:08:17 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:08:18 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.64639s.
2025-09-17 07:08:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/final_masked".
2025-09-17 07:08:19 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:08:20 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.184473s.
2025-09-17 07:08:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization".
2025-09-17 07:08:21 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:08:22 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:09:11 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/stderr.nipype-init).
2025-09-17 07:09:11 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-09-17 07:09:11 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:09:23 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:09:24 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-09-17 07:09:24 | INFO | niworkflows | Generating visual report
2025-09-17 07:09:37 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 75.502582s.
2025-09-17 07:09:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/ds_report_zoomed".
2025-09-17 07:09:37 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:37 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004308s.
2025-09-17 07:09:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/ds_report_bmask".
2025-09-17 07:09:38 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:38 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004165s.
2025-09-17 07:09:38 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/ebdec058877b48bb40c9a264f6def0f2468f668b/mean/mapflow/_mean0".
2025-09-17 07:09:38 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:09:39 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.916888s.
2025-09-17 07:09:39 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/ebdec058877b48bb40c9a264f6def0f2468f668b/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:09:39 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:09:40 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.634211s.
2025-09-17 07:09:41 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/ebdec058877b48bb40c9a264f6def0f2468f668b/quality/mapflow/_quality0".
2025-09-17 07:09:41 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:09:43 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.075608s.
2025-09-17 07:09:45 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/mean/mapflow/_mean0".
2025-09-17 07:09:45 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:09:46 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.870154s.
2025-09-17 07:09:47 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:09:47 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:09:48 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.636419s.
2025-09-17 07:09:49 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/quality/mapflow/_quality0".
2025-09-17 07:09:49 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:09:51 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.064402s.
2025-09-17 07:09:53 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/dee7a7a78935ec6cfffd99482525b938aa0f0470/mean/mapflow/_mean0".
2025-09-17 07:09:53 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:09:54 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.878442s.
2025-09-17 07:09:55 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/dee7a7a78935ec6cfffd99482525b938aa0f0470/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:09:55 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:09:56 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.610451s.
2025-09-17 07:09:57 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/dee7a7a78935ec6cfffd99482525b938aa0f0470/quality/mapflow/_quality0".
2025-09-17 07:09:57 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:09:59 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.079159s.
2025-09-17 07:10:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/ds_report_norm".
2025-09-17 07:10:01 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:01 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.00436s.
2025-09-17 07:10:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/pre_clip".
2025-09-17 07:10:02 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:10:02 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.235393s.
2025-09-17 07:10:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/ebdec058877b48bb40c9a264f6def0f2468f668b/SharpenEPI".
2025-09-17 07:10:03 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:10:05 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.662777s.
2025-09-17 07:10:05 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:10:05 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:10:06 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.905262s.
2025-09-17 07:10:07 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:10:07 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:10:08 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.951497s.
2025-09-17 07:10:09 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:10:09 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:10:10 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.968802s.
2025-09-17 07:10:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/pre_clip".
2025-09-17 07:10:11 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:10:12 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.232511s.
2025-09-17 07:10:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/SharpenEPI".
2025-09-17 07:10:13 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:10:15 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.722483s.
2025-09-17 07:10:15 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:10:15 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:10:16 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.930083s.
2025-09-17 07:10:17 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:10:17 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:10:18 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.97408s.
2025-09-17 07:10:19 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:10:19 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:10:20 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.981229s.
2025-09-17 07:10:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/pre_clip".
2025-09-17 07:10:21 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:10:22 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.236914s.
2025-09-17 07:10:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/dee7a7a78935ec6cfffd99482525b938aa0f0470/SharpenEPI".
2025-09-17 07:10:23 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:10:25 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.703098s.
2025-09-17 07:10:25 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:10:25 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:10:26 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.917897s.
2025-09-17 07:10:27 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:10:27 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:10:28 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.948744s.
2025-09-17 07:10:29 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:10:29 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:10:30 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.983759s.
2025-09-17 07:10:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/pre_n4".
2025-09-17 07:10:31 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:10:33 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.69822s.
2025-09-17 07:10:33 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:10:33 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:33 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.00464s.
2025-09-17 07:10:34 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:10:34 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:34 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004698s.
2025-09-17 07:10:34 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:10:34 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:34 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.00446s.
2025-09-17 07:10:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/pre_n4".
2025-09-17 07:10:34 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:10:35 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.600104s.
2025-09-17 07:10:37 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:10:37 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:37 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004638s.
2025-09-17 07:10:38 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:10:38 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:38 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004587s.
2025-09-17 07:10:38 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:10:38 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:38 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004695s.
2025-09-17 07:10:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/pre_n4".
2025-09-17 07:10:38 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:10:39 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.6405370000000001s.
2025-09-17 07:10:41 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:10:41 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:41 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004552s.
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004418s.
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004478s.
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/synthstrip".
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:11:21 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 39.353825s.
2025-09-17 07:11:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/synthstrip".
2025-09-17 07:11:21 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:01 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 39.710563s.
2025-09-17 07:12:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/synthstrip".
2025-09-17 07:12:01 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:41 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 39.486351s.
2025-09-17 07:12:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/post_n4".
2025-09-17 07:12:41 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:42 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.708202s.
2025-09-17 07:12:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/ebdec058877b48bb40c9a264f6def0f2468f668b/EPI2MNI".
2025-09-17 07:12:43 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:12:43 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:13:04 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:13:04 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/ebdec058877b48bb40c9a264f6def0f2468f668b/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/ebdec058877b48bb40c9a264f6def0f2468f668b/SharpenEPI/sub-13_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/ebdec058877b48bb40c9a264f6def0f2468f668b/SharpenEPI/sub-13_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/ebdec058877b48bb40c9a264f6def0f2468f668b/SharpenEPI/sub-13_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:14:08 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:14:08 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/ebdec058877b48bb40c9a264f6def0f2468f668b/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:14:08 | INFO | niworkflows | Generating visual report
2025-09-17 07:14:21 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 97.264882s.
2025-09-17 07:14:21 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/ebdec058877b48bb40c9a264f6def0f2468f668b/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:14:21 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:14:26 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 4.266905s.
2025-09-17 07:14:27 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/ebdec058877b48bb40c9a264f6def0f2468f668b/smoothness/mapflow/_smoothness0".
2025-09-17 07:14:27 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:14:28 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.231255s.
2025-09-17 07:14:29 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/ebdec058877b48bb40c9a264f6def0f2468f668b/outliers/mapflow/_outliers0".
2025-09-17 07:14:29 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:14:30 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.00593s.
2025-09-17 07:14:31 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/ebdec058877b48bb40c9a264f6def0f2468f668b/gcor/mapflow/_gcor0".
2025-09-17 07:14:31 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:14:33 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.907829s.
2025-09-17 07:14:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/dilated_mask".
2025-09-17 07:14:35 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:14:35 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.012433s.
2025-09-17 07:14:37 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:14:37 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:14:38 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.901094s.
2025-09-17 07:14:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/PlotBrainmask".
2025-09-17 07:14:39 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:14:41 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.051468s.
2025-09-17 07:14:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/post_n4".
2025-09-17 07:14:41 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:14:42 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.699073s.
2025-09-17 07:14:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/EPI2MNI".
2025-09-17 07:14:43 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:14:44 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:15:05 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:15:05 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/SharpenEPI/sub-13_task-balloonanalogrisktask_run-02_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/SharpenEPI/sub-13_task-balloonanalogrisktask_run-02_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/SharpenEPI/sub-13_task-balloonanalogrisktask_run-02_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:16:10 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:16:10 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:16:10 | INFO | niworkflows | Generating visual report
2025-09-17 07:16:23 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 99.647263s.
2025-09-17 07:16:24 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:16:24 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:16:28 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 4.267927s.
2025-09-17 07:16:30 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/smoothness/mapflow/_smoothness0".
2025-09-17 07:16:30 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:16:30 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.231311s.
2025-09-17 07:16:32 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/outliers/mapflow/_outliers0".
2025-09-17 07:16:32 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:16:33 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.003912s.
2025-09-17 07:16:34 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/gcor/mapflow/_gcor0".
2025-09-17 07:16:34 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:16:35 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.777241s.
2025-09-17 07:16:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/dilated_mask".
2025-09-17 07:16:36 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:16:36 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013117s.
2025-09-17 07:16:38 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:16:38 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:16:38 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.912736s.
2025-09-17 07:16:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/PlotBrainmask".
2025-09-17 07:16:40 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:16:41 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.105749s.
2025-09-17 07:16:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/post_n4".
2025-09-17 07:16:42 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:16:42 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.721208s.
2025-09-17 07:16:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/dee7a7a78935ec6cfffd99482525b938aa0f0470/EPI2MNI".
2025-09-17 07:16:44 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:16:44 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:17:05 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:17:05 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/dee7a7a78935ec6cfffd99482525b938aa0f0470/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/dee7a7a78935ec6cfffd99482525b938aa0f0470/SharpenEPI/sub-13_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/dee7a7a78935ec6cfffd99482525b938aa0f0470/SharpenEPI/sub-13_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/dee7a7a78935ec6cfffd99482525b938aa0f0470/SharpenEPI/sub-13_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:18:11 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:18:11 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/dee7a7a78935ec6cfffd99482525b938aa0f0470/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:18:11 | INFO | niworkflows | Generating visual report
2025-09-17 07:18:25 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 101.091808s.
2025-09-17 07:18:26 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/dee7a7a78935ec6cfffd99482525b938aa0f0470/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:18:26 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:18:30 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 4.410564s.
2025-09-17 07:18:32 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/dee7a7a78935ec6cfffd99482525b938aa0f0470/smoothness/mapflow/_smoothness0".
2025-09-17 07:18:32 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:18:32 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.230349s.
2025-09-17 07:18:34 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/dee7a7a78935ec6cfffd99482525b938aa0f0470/outliers/mapflow/_outliers0".
2025-09-17 07:18:34 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:18:35 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.02057s.
2025-09-17 07:18:36 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/dee7a7a78935ec6cfffd99482525b938aa0f0470/gcor/mapflow/_gcor0".
2025-09-17 07:18:36 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:18:37 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.778632s.
2025-09-17 07:18:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/dilated_mask".
2025-09-17 07:18:38 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:18:38 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.014065s.
2025-09-17 07:18:40 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:18:40 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:18:40 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.893531s.
2025-09-17 07:18:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/PlotBrainmask".
2025-09-17 07:18:42 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:18:43 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.095542s.
2025-09-17 07:18:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/final_masked".
2025-09-17 07:18:44 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:18:44 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.019251s.
2025-09-17 07:18:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/ebdec058877b48bb40c9a264f6def0f2468f668b/ResampleSegmentation".
2025-09-17 07:18:46 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:18:47 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.976652s.
2025-09-17 07:18:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/ds_report_norm".
2025-09-17 07:18:48 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:18:48 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004521s.
2025-09-17 07:18:48 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/ebdec058877b48bb40c9a264f6def0f2468f668b/measures/mapflow/_measures0".
2025-09-17 07:18:48 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:18:48 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.573032s.
2025-09-17 07:18:50 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/ebdec058877b48bb40c9a264f6def0f2468f668b/timeseries/mapflow/_timeseries0".
2025-09-17 07:18:50 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:18:50 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.017883s.
2025-09-17 07:18:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/subtract_mask".
2025-09-17 07:18:52 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:18:52 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.015267s.
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004627s.
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/ds_report_bmask".
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004443s.
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/final_masked".
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.019509s.
2025-09-17 07:18:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/ResampleSegmentation".
2025-09-17 07:18:56 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:18:56 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.897787s.
2025-09-17 07:18:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/ds_report_norm".
2025-09-17 07:18:58 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:18:58 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004603s.
2025-09-17 07:18:58 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/measures/mapflow/_measures0".
2025-09-17 07:18:58 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:18:58 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.543559s.
2025-09-17 07:19:00 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:00 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:00 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.015205s.
2025-09-17 07:19:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/subtract_mask".
2025-09-17 07:19:02 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:02 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.01367s.
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004478s.
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/ds_report_bmask".
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004773s.
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/final_masked".
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.019344s.
2025-09-17 07:19:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/dee7a7a78935ec6cfffd99482525b938aa0f0470/ResampleSegmentation".
2025-09-17 07:19:06 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:07 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.93519s.
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/ds_report_norm".
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004504s.
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/dee7a7a78935ec6cfffd99482525b938aa0f0470/measures/mapflow/_measures0".
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.524661s.
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/dee7a7a78935ec6cfffd99482525b938aa0f0470/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.011833s.
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/subtract_mask".
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.009784s.
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004617s.
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/ds_report_bmask".
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004601s.
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/ebdec058877b48bb40c9a264f6def0f2468f668b/datasink/mapflow/_datasink0".
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000589s.
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/ebdec058877b48bb40c9a264f6def0f2468f668b/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004327s.
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/parcels".
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.01512s.
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/datasink/mapflow/_datasink0".
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000418s.
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004138s.
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/parcels".
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.014113s.
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/dee7a7a78935ec6cfffd99482525b938aa0f0470/datasink/mapflow/_datasink0".
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000403s.
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/dee7a7a78935ec6cfffd99482525b938aa0f0470/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004165s.
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/parcels".
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.010796s.
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:19:21 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.641905s.
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:19:23 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.59179s.
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:19:25 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.768202s.
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/ebdec058877b48bb40c9a264f6def0f2468f668b/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004444s.
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/162ae8c4fa816c9b5bc0a023ddc99bebf26b6259/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004617s.
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/dee7a7a78935ec6cfffd99482525b938aa0f0470/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004278s.
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 3.728209s.
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:19:35 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 3.708849s.
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:19:39 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 3.731588s.
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/Enhance".
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.468412s.
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/format_tpm_names".
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 0.780871s.
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/Grad".
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:47 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 1.105839s.
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/apply_mask".
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.18261s.
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/GradientThreshold".
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 4.296213s.
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/segmentation".
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-09-17 07:20:32 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 36.036676s.
2025-09-17 07:20:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/ArtifactMask".
2025-09-17 07:20:34 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-09-17 07:20:35 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 1.142489s.
2025-09-17 07:20:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/PlotHeadmask".
2025-09-17 07:20:36 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:20:37 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 1.755751s.
2025-09-17 07:20:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/harmonize".
2025-09-17 07:20:38 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-09-17 07:20:38 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.486954s.
2025-09-17 07:20:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/PlotSegmentation".
2025-09-17 07:20:40 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 1.9803600000000001s.
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/provenance".
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.042075s.
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/ComputeQI2".
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-09-17 07:20:54 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 10.639104s.
2025-09-17 07:20:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotAirmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/PlotAirmask".
2025-09-17 07:20:56 | INFO | nipype.workflow | [Node] Executing "PlotAirmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:20:57 | INFO | nipype.workflow | [Node] Finished "PlotAirmask", elapsed time 1.789957s.
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotArtmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/PlotArtmask".
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] Executing "PlotArtmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:20:59 | INFO | nipype.workflow | [Node] Finished "PlotArtmask", elapsed time 1.8024149999999999s.
2025-09-17 07:21:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_headmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/ds_report_headmask".
2025-09-17 07:21:00 | INFO | nipype.workflow | [Node] Executing "ds_report_headmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:00 | INFO | nipype.workflow | [Node] Finished "ds_report_headmask", elapsed time 0.004213s.
2025-09-17 07:21:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/measures".
2025-09-17 07:21:00 | INFO | nipype.workflow | [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
2025-09-17 07:21:01 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=18.6863)
2025-09-17 07:21:01 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=18.6863)
2025-09-17 07:21:01 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=18.6863)
2025-09-17 07:21:03 | INFO | nipype.workflow | [Node] Finished "measures", elapsed time 3.564994s.
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_segm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/ds_report_segm".
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Executing "ds_report_segm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Finished "ds_report_segm", elapsed time 0.004098s.
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_noisefit" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/ds_report_noisefit".
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Executing "ds_report_noisefit" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Finished "ds_report_noisefit", elapsed time 0.004109s.
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_airmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/ds_report_airmask".
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Executing "ds_report_airmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Finished "ds_report_airmask", elapsed time 0.004059s.
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_artmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/ds_report_artmask".
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Executing "ds_report_artmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Finished "ds_report_artmask", elapsed time 0.004273s.
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject13.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_637256..ds..sourcedata..raw..sub-13..anat..sub-13_T1w.nii.gz_metadata_FileSize0.004552500322461128.FileSizeUnitsGB.NumberOfVolumes1/datasink".
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Finished "datasink", elapsed time 0.000473s.
2025-09-17 07:21:06 | INFO | nipype.workflow | Generating reports...
2025-09-17 07:21:06 | INFO | nipype.workflow | Report generation finished (4 reports).
2025-09-17 07:21:06 | IMPORTANT | mriqc | Participant level finished successfully averaging 00h 06min 18s per subject.
2025-09-17 07:21:06 | INFO | mriqc | Generating BIDS derivatives metadata.
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MRIQC completed (elapsed time 00h 25min 13s).
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