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ds000001-mriqc/logs/duct/sub-11_2025.09.17T08.56.20-3224701stdout
Felix Hoffstaedter 8c766a2498 [DATALAD RUNCMD] Compute MRIQC for sub-11 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-11 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "e0514950-e780-4f0e-b0d2-b16e0a2cf2ea",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-11",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-09-17 09:23:06 +02:00

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------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_3217533/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-09-17 06:56:21 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-09-17 06:56:21 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-09-17 06:56:21 | IMPORTANT | mriqc | Extracting metadata and entities for 3 input runs of modality 'bold'...
2025-09-17 06:56:21 | IMPORTANT | mriqc | File size ('bold'): 0.05|0.05 GB [maximum|average].
2025-09-17 06:56:21 | INFO | mriqc | MRIQC config file: /tmp/config-20250917-065620_1b749a85-ae69-42c9-88ac-d3683072d1b2.toml.
2025-09-17 06:56:25 | INFO | matplotlib.font_manager | generated new fontManager
2025-09-17 06:56:26 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-09-17 06:56:27 | INFO | nipype.workflow | Building functional MRIQC workflow for 3 BOLD runs..
2025-09-17 06:56:27 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-09-17 06:56:31 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-09-17 06:56:35 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-09-17 06:56:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/conform".
2025-09-17 06:56:35 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-09-17 06:56:35 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.285033s.
2025-09-17 06:56:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/2ee42416303b80b4403b50dd8a52ba49f11ffad9/pick_echo".
2025-09-17 06:56:37 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:37 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000122s.
2025-09-17 06:56:39 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2ee42416303b80b4403b50dd8a52ba49f11ffad9/provenance/mapflow/_provenance0".
2025-09-17 06:56:39 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:39 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.075164s.
2025-09-17 06:56:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/pick_echo".
2025-09-17 06:56:39 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:39 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 9.4e-05s.
2025-09-17 06:56:41 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/provenance/mapflow/_provenance0".
2025-09-17 06:56:41 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:41 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.073155s.
2025-09-17 06:56:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/pick_echo".
2025-09-17 06:56:41 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:41 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 9.9e-05s.
2025-09-17 06:56:43 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/provenance/mapflow/_provenance0".
2025-09-17 06:56:43 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:43 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.072966s.
2025-09-17 06:56:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/pre_clip".
2025-09-17 06:56:43 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 06:56:51 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 7.540475s.
2025-09-17 06:56:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/RotationMask".
2025-09-17 06:56:51 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-09-17 06:56:51 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.333168s.
2025-09-17 06:56:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicNoise".
2025-09-17 06:56:53 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 06:56:57 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 3.9977s.
2025-09-17 06:56:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/2ee42416303b80b4403b50dd8a52ba49f11ffad9/non_steady_state_detector".
2025-09-17 06:56:59 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:56:59 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.19403s.
2025-09-17 06:57:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/non_steady_state_detector".
2025-09-17 06:57:01 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:01 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.192543s.
2025-09-17 06:57:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/non_steady_state_detector".
2025-09-17 06:57:03 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:03 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.190104s.
2025-09-17 06:57:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/pre_n4".
2025-09-17 06:57:05 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 06:57:58 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 53.071472s.
2025-09-17 06:57:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/ds_report_background".
2025-09-17 06:57:59 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 06:57:59 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.007023s.
2025-09-17 06:57:59 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/2ee42416303b80b4403b50dd8a52ba49f11ffad9/sanitize/mapflow/_sanitize0".
2025-09-17 06:57:59 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:57:59 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.039591s.
2025-09-17 06:58:01 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:01 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:03 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.101086s.
2025-09-17 06:58:05 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:05 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:05 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.038928s.
2025-09-17 06:58:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/synthstrip".
2025-09-17 06:58:07 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 06:58:47 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 39.926388s.
2025-09-17 06:58:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/2ee42416303b80b4403b50dd8a52ba49f11ffad9/estimate_hm".
2025-09-17 06:58:49 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:01:56 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 187.447406s.
2025-09-17 07:01:57 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:01:57 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:01:59 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.465425s.
2025-09-17 07:01:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/estimate_hm".
2025-09-17 07:01:59 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:05:05 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 186.374849s.
2025-09-17 07:05:07 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:05:07 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:05:09 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.389101s.
2025-09-17 07:05:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/estimate_hm".
2025-09-17 07:05:09 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:08:14 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 184.834387s.
2025-09-17 07:08:15 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:08:15 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:17 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.456737s.
2025-09-17 07:08:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/post_n4".
2025-09-17 07:08:17 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:08:30 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 12.949463s.
2025-09-17 07:08:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/smoothness".
2025-09-17 07:08:31 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:08:34 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 2.569783s.
2025-09-17 07:08:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicZoomed".
2025-09-17 07:08:35 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:39 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.406245s.
2025-09-17 07:08:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/PlotBrainmask".
2025-09-17 07:08:39 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:08:42 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 2.282561s.
2025-09-17 07:08:43 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/2ee42416303b80b4403b50dd8a52ba49f11ffad9/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:08:43 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:58 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 14.506592s.
2025-09-17 07:08:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/2ee42416303b80b4403b50dd8a52ba49f11ffad9/ComputeFD".
2025-09-17 07:08:59 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:08:59 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.00571s.
2025-09-17 07:09:01 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:01 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:02 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.692082s.
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:09:18 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 14.299303s.
2025-09-17 07:09:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/ComputeFD".
2025-09-17 07:09:19 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:09:19 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.005768s.
2025-09-17 07:09:21 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:21 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:22 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.610032s.
2025-09-17 07:09:23 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:09:23 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:09:38 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 14.512973s.
2025-09-17 07:09:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/ComputeFD".
2025-09-17 07:09:39 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:09:39 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.005876s.
2025-09-17 07:09:41 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:41 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:42 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.685841s.
2025-09-17 07:09:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/final_masked".
2025-09-17 07:09:43 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:09:44 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.196773s.
2025-09-17 07:09:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization".
2025-09-17 07:09:45 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:09:46 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:10:35 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/stderr.nipype-init).
2025-09-17 07:10:35 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-09-17 07:10:35 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:10:47 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:10:47 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-09-17 07:10:47 | INFO | niworkflows | Generating visual report
2025-09-17 07:11:02 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 76.347812s.
2025-09-17 07:11:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/ds_report_zoomed".
2025-09-17 07:11:03 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:03 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004041s.
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/ds_report_bmask".
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.003847s.
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/2ee42416303b80b4403b50dd8a52ba49f11ffad9/mean/mapflow/_mean0".
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.857076s.
2025-09-17 07:11:05 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/2ee42416303b80b4403b50dd8a52ba49f11ffad9/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:11:05 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.66919s.
2025-09-17 07:11:07 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2ee42416303b80b4403b50dd8a52ba49f11ffad9/quality/mapflow/_quality0".
2025-09-17 07:11:07 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:11:09 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.04958s.
2025-09-17 07:11:11 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/mean/mapflow/_mean0".
2025-09-17 07:11:11 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.82729s.
2025-09-17 07:11:13 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:11:13 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:11:14 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.668516s.
2025-09-17 07:11:15 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/quality/mapflow/_quality0".
2025-09-17 07:11:15 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:11:17 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.032043s.
2025-09-17 07:11:19 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/mean/mapflow/_mean0".
2025-09-17 07:11:19 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.822023s.
2025-09-17 07:11:21 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:11:21 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.642825s.
2025-09-17 07:11:23 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/quality/mapflow/_quality0".
2025-09-17 07:11:23 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:11:25 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.030598s.
2025-09-17 07:11:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/ds_report_norm".
2025-09-17 07:11:27 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:27 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.003907s.
2025-09-17 07:11:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/pre_clip".
2025-09-17 07:11:27 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:28 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.232362s.
2025-09-17 07:11:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2ee42416303b80b4403b50dd8a52ba49f11ffad9/SharpenEPI".
2025-09-17 07:11:29 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.486867s.
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.816932s.
2025-09-17 07:11:33 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:33 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.854382s.
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.862072s.
2025-09-17 07:11:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/pre_clip".
2025-09-17 07:11:37 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.22604s.
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/SharpenEPI".
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:41 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.539107s.
2025-09-17 07:11:41 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:41 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.824699s.
2025-09-17 07:11:43 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:43 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.858022s.
2025-09-17 07:11:45 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:45 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.862808s.
2025-09-17 07:11:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/pre_clip".
2025-09-17 07:11:47 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.234034s.
2025-09-17 07:11:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/SharpenEPI".
2025-09-17 07:11:49 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:51 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.5114999999999998s.
2025-09-17 07:11:51 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:51 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.796979s.
2025-09-17 07:11:53 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:53 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:54 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.831505s.
2025-09-17 07:11:55 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:55 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:56 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.844571s.
2025-09-17 07:11:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/pre_n4".
2025-09-17 07:11:57 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:59 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.524573s.
2025-09-17 07:11:59 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:59 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:59 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004192s.
2025-09-17 07:11:59 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:59 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:59 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.009393s.
2025-09-17 07:12:00 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:12:00 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:00 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004061s.
2025-09-17 07:12:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/pre_n4".
2025-09-17 07:12:00 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:01 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.4465569999999999s.
2025-09-17 07:12:01 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:12:01 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:01 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004156s.
2025-09-17 07:12:01 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:12:01 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:01 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004136s.
2025-09-17 07:12:02 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:12:02 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:02 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.00716s.
2025-09-17 07:12:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/pre_n4".
2025-09-17 07:12:02 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:03 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.440756s.
2025-09-17 07:12:03 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:12:03 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:03 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004093s.
2025-09-17 07:12:03 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:12:03 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:03 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004117s.
2025-09-17 07:12:04 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:12:04 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:04 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004233s.
2025-09-17 07:12:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/synthstrip".
2025-09-17 07:12:04 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:49 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 44.803834s.
2025-09-17 07:12:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/synthstrip".
2025-09-17 07:12:49 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:13:34 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 44.819002s.
2025-09-17 07:13:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/synthstrip".
2025-09-17 07:13:35 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:14:20 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 44.603152s.
2025-09-17 07:14:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/post_n4".
2025-09-17 07:14:21 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:14:22 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.712967s.
2025-09-17 07:14:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2ee42416303b80b4403b50dd8a52ba49f11ffad9/EPI2MNI".
2025-09-17 07:14:23 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:14:23 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:14:44 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2ee42416303b80b4403b50dd8a52ba49f11ffad9/EPI2MNI/stderr.nipype-init).
2025-09-17 07:14:44 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:14:44 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2ee42416303b80b4403b50dd8a52ba49f11ffad9/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2ee42416303b80b4403b50dd8a52ba49f11ffad9/SharpenEPI/sub-11_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2ee42416303b80b4403b50dd8a52ba49f11ffad9/SharpenEPI/sub-11_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2ee42416303b80b4403b50dd8a52ba49f11ffad9/SharpenEPI/sub-11_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:15:42 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:15:42 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2ee42416303b80b4403b50dd8a52ba49f11ffad9/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:15:42 | INFO | niworkflows | Generating visual report
2025-09-17 07:15:56 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 92.878968s.
2025-09-17 07:15:57 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2ee42416303b80b4403b50dd8a52ba49f11ffad9/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:15:57 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:16:04 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 6.063774s.
2025-09-17 07:16:05 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2ee42416303b80b4403b50dd8a52ba49f11ffad9/smoothness/mapflow/_smoothness0".
2025-09-17 07:16:05 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:16:06 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.247135s.
2025-09-17 07:16:07 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2ee42416303b80b4403b50dd8a52ba49f11ffad9/outliers/mapflow/_outliers0".
2025-09-17 07:16:07 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:16:09 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.139661s.
2025-09-17 07:16:09 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2ee42416303b80b4403b50dd8a52ba49f11ffad9/gcor/mapflow/_gcor0".
2025-09-17 07:16:09 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:16:11 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.6981730000000002s.
2025-09-17 07:16:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/dilated_mask".
2025-09-17 07:16:11 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:16:11 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.012842s.
2025-09-17 07:16:13 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:16:13 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:16:14 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.837907s.
2025-09-17 07:16:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/PlotBrainmask".
2025-09-17 07:16:15 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:16:17 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.1624430000000001s.
2025-09-17 07:16:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/post_n4".
2025-09-17 07:16:17 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:16:18 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.756109s.
2025-09-17 07:16:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/EPI2MNI".
2025-09-17 07:16:19 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:16:19 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:16:40 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:16:40 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/SharpenEPI/sub-11_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/SharpenEPI/sub-11_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/SharpenEPI/sub-11_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:17:38 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:17:38 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:17:38 | INFO | niworkflows | Generating visual report
2025-09-17 07:17:53 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 93.359699s.
2025-09-17 07:17:54 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:17:54 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:18:00 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 6.049116s.
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/smoothness/mapflow/_smoothness0".
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.272794s.
2025-09-17 07:18:04 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/outliers/mapflow/_outliers0".
2025-09-17 07:18:04 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:18:05 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.124363s.
2025-09-17 07:18:06 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/gcor/mapflow/_gcor0".
2025-09-17 07:18:06 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:18:07 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.604722s.
2025-09-17 07:18:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/dilated_mask".
2025-09-17 07:18:08 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:18:08 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013269s.
2025-09-17 07:18:10 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:18:10 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:18:10 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.86514s.
2025-09-17 07:18:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/PlotBrainmask".
2025-09-17 07:18:12 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:18:13 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.140606s.
2025-09-17 07:18:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/post_n4".
2025-09-17 07:18:14 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:18:14 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.753242s.
2025-09-17 07:18:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/EPI2MNI".
2025-09-17 07:18:16 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:18:16 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:18:38 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:18:38 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/SharpenEPI/sub-11_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/SharpenEPI/sub-11_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/SharpenEPI/sub-11_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:19:36 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:19:36 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:19:36 | INFO | niworkflows | Generating visual report
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 94.812134s.
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.9949s.
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/smoothness/mapflow/_smoothness0".
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.247393s.
2025-09-17 07:20:02 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/outliers/mapflow/_outliers0".
2025-09-17 07:20:02 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.1245829999999999s.
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/gcor/mapflow/_gcor0".
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:20:05 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.6063610000000001s.
2025-09-17 07:20:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/dilated_mask".
2025-09-17 07:20:06 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:20:06 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013828s.
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.857518s.
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/PlotBrainmask".
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:20:11 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.141075s.
2025-09-17 07:20:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/final_masked".
2025-09-17 07:20:12 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:20:12 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.017072s.
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2ee42416303b80b4403b50dd8a52ba49f11ffad9/ResampleSegmentation".
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.012621s.
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/ds_report_norm".
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004182s.
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2ee42416303b80b4403b50dd8a52ba49f11ffad9/measures/mapflow/_measures0".
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.573951s.
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2ee42416303b80b4403b50dd8a52ba49f11ffad9/timeseries/mapflow/_timeseries0".
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.017454s.
2025-09-17 07:20:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/subtract_mask".
2025-09-17 07:20:20 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:20:20 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.014106s.
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004251s.
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/ds_report_bmask".
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004236s.
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/final_masked".
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.020449s.
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/ResampleSegmentation".
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:20:25 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.962577s.
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/ds_report_norm".
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004337s.
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/measures/mapflow/_measures0".
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.583727s.
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/timeseries/mapflow/_timeseries0".
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.016005s.
2025-09-17 07:20:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/subtract_mask".
2025-09-17 07:20:30 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:20:30 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.011952s.
2025-09-17 07:20:32 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:20:32 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:32 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004115s.
2025-09-17 07:20:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/ds_report_bmask".
2025-09-17 07:20:32 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:32 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004109s.
2025-09-17 07:20:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/final_masked".
2025-09-17 07:20:32 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:20:32 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.02004s.
2025-09-17 07:20:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/ResampleSegmentation".
2025-09-17 07:20:34 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:20:35 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.961448s.
2025-09-17 07:20:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/ds_report_norm".
2025-09-17 07:20:36 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:36 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004084s.
2025-09-17 07:20:36 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/measures/mapflow/_measures0".
2025-09-17 07:20:36 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:20:36 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.557237s.
2025-09-17 07:20:38 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/timeseries/mapflow/_timeseries0".
2025-09-17 07:20:38 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:20:38 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.015554s.
2025-09-17 07:20:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/subtract_mask".
2025-09-17 07:20:40 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:20:40 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.01312s.
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004133s.
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/ds_report_bmask".
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004125s.
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2ee42416303b80b4403b50dd8a52ba49f11ffad9/datasink/mapflow/_datasink0".
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000439s.
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2ee42416303b80b4403b50dd8a52ba49f11ffad9/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.003551s.
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/parcels".
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.014434s.
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/datasink/mapflow/_datasink0".
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000333s.
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.00366s.
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/parcels".
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.014297s.
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/datasink/mapflow/_datasink0".
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.00033s.
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.003552s.
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/parcels".
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.01295s.
2025-09-17 07:20:48 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:48 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:52 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 3.96893s.
2025-09-17 07:20:54 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:54 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:57 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 3.866213s.
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:21:02 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 4.042849s.
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2ee42416303b80b4403b50dd8a52ba49f11ffad9/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004249s.
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/fd90349b42fb7b0fc00bfafcfd924c2dac735eeb/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004237s.
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/7dd33bcb19fb8c75575f79c30628e5d7265e7a23/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.003929s.
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:21:08 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 4.372561s.
2025-09-17 07:21:10 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:21:10 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:21:14 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 4.445946s.
2025-09-17 07:21:16 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:21:16 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:21:20 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 4.40592s.
2025-09-17 07:21:22 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:21:22 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-09-17 07:21:22 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-09-17 07:21:22 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:21:22 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-09-17 07:21:22 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-09-17 07:21:22 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:21:22 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-09-17 07:21:22 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-09-17 07:21:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/Enhance".
2025-09-17 07:21:24 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:21:24 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.466466s.
2025-09-17 07:21:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/format_tpm_names".
2025-09-17 07:21:26 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:21:26 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 0.916505s.
2025-09-17 07:21:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/Grad".
2025-09-17 07:21:28 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 1.3040479999999999s.
2025-09-17 07:21:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/apply_mask".
2025-09-17 07:21:30 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:21:30 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.196734s.
2025-09-17 07:21:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/GradientThreshold".
2025-09-17 07:21:32 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:21:36 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 4.213662s.
2025-09-17 07:21:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/segmentation".
2025-09-17 07:21:38 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 44.113905s.
2025-09-17 07:22:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/ArtifactMask".
2025-09-17 07:22:24 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-09-17 07:22:25 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 1.325965s.
2025-09-17 07:22:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/PlotHeadmask".
2025-09-17 07:22:26 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:22:27 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 1.913056s.
2025-09-17 07:22:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/harmonize".
2025-09-17 07:22:30 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-09-17 07:22:30 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.598613s.
2025-09-17 07:22:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/PlotSegmentation".
2025-09-17 07:22:32 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 2.14616s.
2025-09-17 07:22:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/provenance".
2025-09-17 07:22:36 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 07:22:36 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.038709s.
2025-09-17 07:22:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/ComputeQI2".
2025-09-17 07:22:36 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-09-17 07:22:47 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 11.296517s.
2025-09-17 07:22:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotAirmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/PlotAirmask".
2025-09-17 07:22:48 | INFO | nipype.workflow | [Node] Executing "PlotAirmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:22:49 | INFO | nipype.workflow | [Node] Finished "PlotAirmask", elapsed time 1.912464s.
2025-09-17 07:22:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotArtmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/PlotArtmask".
2025-09-17 07:22:52 | INFO | nipype.workflow | [Node] Executing "PlotArtmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:22:54 | INFO | nipype.workflow | [Node] Finished "PlotArtmask", elapsed time 1.9363329999999999s.
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_headmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/ds_report_headmask".
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] Executing "ds_report_headmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] Finished "ds_report_headmask", elapsed time 0.004022s.
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/measures".
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
2025-09-17 07:22:57 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=16.0784)
2025-09-17 07:22:57 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=16.0784)
2025-09-17 07:22:57 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=16.0784)
2025-09-17 07:23:00 | INFO | nipype.workflow | [Node] Finished "measures", elapsed time 4.226279s.
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_segm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/ds_report_segm".
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Executing "ds_report_segm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Finished "ds_report_segm", elapsed time 0.003758s.
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_noisefit" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/ds_report_noisefit".
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Executing "ds_report_noisefit" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Finished "ds_report_noisefit", elapsed time 0.003738s.
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_airmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/ds_report_airmask".
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Executing "ds_report_airmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Finished "ds_report_airmask", elapsed time 0.003732s.
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_artmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/ds_report_artmask".
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Executing "ds_report_artmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Finished "ds_report_artmask", elapsed time 0.003717s.
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject11.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3217533..ds..sourcedata..raw..sub-11..anat..sub-11_T1w.nii.gz_metadata_FileSize0.005321321077644825.FileSizeUnitsGB.NumberOfVolumes1/datasink".
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Finished "datasink", elapsed time 0.000362s.
2025-09-17 07:23:04 | INFO | nipype.workflow | Generating reports...
2025-09-17 07:23:04 | INFO | nipype.workflow | Report generation finished (4 reports).
2025-09-17 07:23:04 | IMPORTANT | mriqc | Participant level finished successfully averaging 00h 06min 41s per subject.
2025-09-17 07:23:04 | INFO | mriqc | Generating BIDS derivatives metadata.
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MRIQC completed (elapsed time 00h 26min 44s).
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