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ds000001-mriqc/logs/duct/sub-10_2025.09.17T08.56.45-1847414stdout
Felix Hoffstaedter 29f24d1077 [DATALAD RUNCMD] Compute MRIQC for sub-10 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-10 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "e0514950-e780-4f0e-b0d2-b16e0a2cf2ea",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-10",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-09-17 09:21:33 +02:00

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------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_1841110/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-09-17 06:56:49 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-09-17 06:56:49 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-09-17 06:56:49 | IMPORTANT | mriqc | Extracting metadata and entities for 3 input runs of modality 'bold'...
2025-09-17 06:56:49 | IMPORTANT | mriqc | File size ('bold'): 0.05|0.05 GB [maximum|average].
2025-09-17 06:56:49 | INFO | mriqc | MRIQC config file: /tmp/config-20250917-065646_36405bd9-005c-49e2-a354-efa478e8a64f.toml.
2025-09-17 06:56:54 | INFO | matplotlib.font_manager | generated new fontManager
2025-09-17 06:56:55 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-09-17 06:56:55 | INFO | nipype.workflow | Building functional MRIQC workflow for 3 BOLD runs..
2025-09-17 06:56:56 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-09-17 06:57:00 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-09-17 06:57:04 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-09-17 06:57:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/conform".
2025-09-17 06:57:04 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-09-17 06:57:04 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.246312s.
2025-09-17 06:57:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/pick_echo".
2025-09-17 06:57:06 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:57:06 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000134s.
2025-09-17 06:57:08 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/provenance/mapflow/_provenance0".
2025-09-17 06:57:08 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:57:08 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.081602s.
2025-09-17 06:57:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/202625ac59407d2c6904c77b6d111d779a22a83d/pick_echo".
2025-09-17 06:57:08 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:57:08 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000119s.
2025-09-17 06:57:10 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/202625ac59407d2c6904c77b6d111d779a22a83d/provenance/mapflow/_provenance0".
2025-09-17 06:57:10 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:57:10 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.081002s.
2025-09-17 06:57:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/74128da7135fb9a9c1c05ab66cc474892d94cd49/pick_echo".
2025-09-17 06:57:10 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:57:10 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000121s.
2025-09-17 06:57:12 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/74128da7135fb9a9c1c05ab66cc474892d94cd49/provenance/mapflow/_provenance0".
2025-09-17 06:57:12 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:57:12 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.081422s.
2025-09-17 06:57:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/pre_clip".
2025-09-17 06:57:12 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 06:57:21 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 9.11653s.
2025-09-17 06:57:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/RotationMask".
2025-09-17 06:57:22 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-09-17 06:57:22 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.415612s.
2025-09-17 06:57:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicNoise".
2025-09-17 06:57:24 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 06:57:28 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.483135s.
2025-09-17 06:57:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/non_steady_state_detector".
2025-09-17 06:57:30 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:30 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.188434s.
2025-09-17 06:57:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/202625ac59407d2c6904c77b6d111d779a22a83d/non_steady_state_detector".
2025-09-17 06:57:32 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:32 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.18739s.
2025-09-17 06:57:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/74128da7135fb9a9c1c05ab66cc474892d94cd49/non_steady_state_detector".
2025-09-17 06:57:34 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:34 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.187006s.
2025-09-17 06:57:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/pre_n4".
2025-09-17 06:57:36 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 06:58:37 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 60.780274s.
2025-09-17 06:58:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/ds_report_background".
2025-09-17 06:58:38 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 06:58:38 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.008022s.
2025-09-17 06:58:38 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:38 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:40 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.065273s.
2025-09-17 06:58:42 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/202625ac59407d2c6904c77b6d111d779a22a83d/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:42 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:42 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.040038s.
2025-09-17 06:58:44 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/74128da7135fb9a9c1c05ab66cc474892d94cd49/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:44 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:44 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.040052s.
2025-09-17 06:58:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/synthstrip".
2025-09-17 06:58:46 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 06:59:21 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 35.522484s.
2025-09-17 06:59:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/estimate_hm".
2025-09-17 06:59:22 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:02:10 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 167.829264s.
2025-09-17 07:02:10 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:02:10 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:02:11 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.145887s.
2025-09-17 07:02:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/202625ac59407d2c6904c77b6d111d779a22a83d/estimate_hm".
2025-09-17 07:02:12 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:04:58 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 166.393286s.
2025-09-17 07:05:00 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:05:00 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:05:01 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.177192s.
2025-09-17 07:05:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/74128da7135fb9a9c1c05ab66cc474892d94cd49/estimate_hm".
2025-09-17 07:05:02 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:07:50 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 167.786491s.
2025-09-17 07:07:50 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:07:50 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:07:51 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.177113s.
2025-09-17 07:07:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/post_n4".
2025-09-17 07:07:52 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:08:06 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 13.9242s.
2025-09-17 07:08:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/smoothness".
2025-09-17 07:08:08 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:08:10 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 2.297968s.
2025-09-17 07:08:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicZoomed".
2025-09-17 07:08:12 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:16 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.556349s.
2025-09-17 07:08:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/PlotBrainmask".
2025-09-17 07:08:16 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:08:18 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 2.179926s.
2025-09-17 07:08:20 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:08:20 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:34 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.638924s.
2025-09-17 07:08:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/ComputeFD".
2025-09-17 07:08:34 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:08:34 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.006116s.
2025-09-17 07:08:36 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:08:36 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:08:37 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.617112s.
2025-09-17 07:08:38 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/202625ac59407d2c6904c77b6d111d779a22a83d/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:08:38 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:52 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.806561s.
2025-09-17 07:08:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/202625ac59407d2c6904c77b6d111d779a22a83d/ComputeFD".
2025-09-17 07:08:52 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:08:52 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.003099s.
2025-09-17 07:08:54 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:08:54 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:08:55 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.651554s.
2025-09-17 07:08:56 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/74128da7135fb9a9c1c05ab66cc474892d94cd49/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:08:56 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:09:10 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.749389s.
2025-09-17 07:09:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/74128da7135fb9a9c1c05ab66cc474892d94cd49/ComputeFD".
2025-09-17 07:09:10 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:09:10 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.003049s.
2025-09-17 07:09:12 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:12 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:13 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.662872s.
2025-09-17 07:09:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/final_masked".
2025-09-17 07:09:14 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:09:14 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.217881s.
2025-09-17 07:09:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization".
2025-09-17 07:09:16 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:09:17 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:09:57 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/stderr.nipype-init).
2025-09-17 07:09:57 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-09-17 07:09:57 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:10:08 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:10:08 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-09-17 07:10:08 | INFO | niworkflows | Generating visual report
2025-09-17 07:10:21 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 65.064s.
2025-09-17 07:10:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/ds_report_zoomed".
2025-09-17 07:10:22 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:22 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004381s.
2025-09-17 07:10:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/ds_report_bmask".
2025-09-17 07:10:22 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:22 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004256s.
2025-09-17 07:10:22 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/mean/mapflow/_mean0".
2025-09-17 07:10:22 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:23 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.929988s.
2025-09-17 07:10:24 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:10:24 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:10:25 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.623242s.
2025-09-17 07:10:26 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/quality/mapflow/_quality0".
2025-09-17 07:10:26 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:10:28 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.241458s.
2025-09-17 07:10:30 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/202625ac59407d2c6904c77b6d111d779a22a83d/mean/mapflow/_mean0".
2025-09-17 07:10:30 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:31 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.883976s.
2025-09-17 07:10:32 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/202625ac59407d2c6904c77b6d111d779a22a83d/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:10:32 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:10:33 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.625245s.
2025-09-17 07:10:34 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/202625ac59407d2c6904c77b6d111d779a22a83d/quality/mapflow/_quality0".
2025-09-17 07:10:34 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:10:36 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.211545s.
2025-09-17 07:10:38 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/74128da7135fb9a9c1c05ab66cc474892d94cd49/mean/mapflow/_mean0".
2025-09-17 07:10:38 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:39 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.878064s.
2025-09-17 07:10:40 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/74128da7135fb9a9c1c05ab66cc474892d94cd49/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:10:40 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:10:41 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.65274s.
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/74128da7135fb9a9c1c05ab66cc474892d94cd49/quality/mapflow/_quality0".
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:10:44 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.205358s.
2025-09-17 07:10:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/ds_report_norm".
2025-09-17 07:10:46 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:46 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004466s.
2025-09-17 07:10:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/pre_clip".
2025-09-17 07:10:46 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:10:47 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.241692s.
2025-09-17 07:10:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/SharpenEPI".
2025-09-17 07:10:48 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:10:50 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.631535s.
2025-09-17 07:10:50 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:10:50 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:10:51 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.88992s.
2025-09-17 07:10:52 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:10:52 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:10:53 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.933827s.
2025-09-17 07:10:54 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:10:54 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:10:55 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.931673s.
2025-09-17 07:10:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/202625ac59407d2c6904c77b6d111d779a22a83d/pre_clip".
2025-09-17 07:10:56 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:10:56 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.244098s.
2025-09-17 07:10:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/202625ac59407d2c6904c77b6d111d779a22a83d/SharpenEPI".
2025-09-17 07:10:58 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.655978s.
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:01 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.866509s.
2025-09-17 07:11:02 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:02 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:03 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.929599s.
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:05 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.94109s.
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/pre_clip".
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.267032s.
2025-09-17 07:11:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/74128da7135fb9a9c1c05ab66cc474892d94cd49/SharpenEPI".
2025-09-17 07:11:08 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:10 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.677508s.
2025-09-17 07:11:10 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:10 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:11 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.885797s.
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:13 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.933119s.
2025-09-17 07:11:14 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:14 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:15 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.944668s.
2025-09-17 07:11:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/pre_n4".
2025-09-17 07:11:16 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.682088s.
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004921s.
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004563s.
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004544s.
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/202625ac59407d2c6904c77b6d111d779a22a83d/pre_n4".
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.6089579999999999s.
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004544s.
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004527s.
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004524s.
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/pre_n4".
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.617298s.
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004576s.
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004667s.
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.00478s.
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/synthstrip".
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 29.924079s.
2025-09-17 07:11:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/202625ac59407d2c6904c77b6d111d779a22a83d/synthstrip".
2025-09-17 07:11:54 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 29.888357s.
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/synthstrip".
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:54 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 29.899072s.
2025-09-17 07:12:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/post_n4".
2025-09-17 07:12:54 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:55 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.773696s.
2025-09-17 07:12:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/EPI2MNI".
2025-09-17 07:12:56 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:12:56 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:13:20 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/EPI2MNI/stderr.nipype-init).
2025-09-17 07:13:20 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:13:20 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/SharpenEPI/sub-10_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/SharpenEPI/sub-10_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/SharpenEPI/sub-10_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:14:22 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:14:22 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:14:22 | INFO | niworkflows | Generating visual report
2025-09-17 07:14:35 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 98.877479s.
2025-09-17 07:14:36 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:14:36 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:14:42 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.349962s.
2025-09-17 07:14:42 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/smoothness/mapflow/_smoothness0".
2025-09-17 07:14:42 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:14:43 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.268177s.
2025-09-17 07:14:44 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/outliers/mapflow/_outliers0".
2025-09-17 07:14:44 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:14:45 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.188094s.
2025-09-17 07:14:46 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/gcor/mapflow/_gcor0".
2025-09-17 07:14:46 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:14:48 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.965841s.
2025-09-17 07:14:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/dilated_mask".
2025-09-17 07:14:50 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:14:50 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.012574s.
2025-09-17 07:14:52 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:14:52 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:14:53 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.896511s.
2025-09-17 07:14:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/PlotBrainmask".
2025-09-17 07:14:54 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:14:55 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 0.981335s.
2025-09-17 07:14:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/202625ac59407d2c6904c77b6d111d779a22a83d/post_n4".
2025-09-17 07:14:56 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:14:57 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.780008s.
2025-09-17 07:14:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/202625ac59407d2c6904c77b6d111d779a22a83d/EPI2MNI".
2025-09-17 07:14:58 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:14:58 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:15:21 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/202625ac59407d2c6904c77b6d111d779a22a83d/EPI2MNI/stderr.nipype-init).
2025-09-17 07:15:21 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:15:21 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/202625ac59407d2c6904c77b6d111d779a22a83d/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/202625ac59407d2c6904c77b6d111d779a22a83d/SharpenEPI/sub-10_task-balloonanalogrisktask_run-02_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/202625ac59407d2c6904c77b6d111d779a22a83d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/202625ac59407d2c6904c77b6d111d779a22a83d/SharpenEPI/sub-10_task-balloonanalogrisktask_run-02_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/202625ac59407d2c6904c77b6d111d779a22a83d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/202625ac59407d2c6904c77b6d111d779a22a83d/SharpenEPI/sub-10_task-balloonanalogrisktask_run-02_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/202625ac59407d2c6904c77b6d111d779a22a83d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:16:26 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:16:26 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/202625ac59407d2c6904c77b6d111d779a22a83d/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:16:26 | INFO | niworkflows | Generating visual report
2025-09-17 07:16:39 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 100.886078s.
2025-09-17 07:16:40 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/202625ac59407d2c6904c77b6d111d779a22a83d/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:16:40 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:16:46 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.300625s.
2025-09-17 07:16:46 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/202625ac59407d2c6904c77b6d111d779a22a83d/smoothness/mapflow/_smoothness0".
2025-09-17 07:16:46 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:16:47 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.262494s.
2025-09-17 07:16:48 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/202625ac59407d2c6904c77b6d111d779a22a83d/outliers/mapflow/_outliers0".
2025-09-17 07:16:48 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:16:49 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.124178s.
2025-09-17 07:16:50 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/202625ac59407d2c6904c77b6d111d779a22a83d/gcor/mapflow/_gcor0".
2025-09-17 07:16:50 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:16:52 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.799094s.
2025-09-17 07:16:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/dilated_mask".
2025-09-17 07:16:52 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:16:52 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013266s.
2025-09-17 07:16:54 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:16:54 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:16:55 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.875081s.
2025-09-17 07:16:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/PlotBrainmask".
2025-09-17 07:16:56 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:16:57 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 0.955724s.
2025-09-17 07:16:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/post_n4".
2025-09-17 07:16:58 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:16:59 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.792037s.
2025-09-17 07:17:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/74128da7135fb9a9c1c05ab66cc474892d94cd49/EPI2MNI".
2025-09-17 07:17:00 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:17:00 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:17:22 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:17:22 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/74128da7135fb9a9c1c05ab66cc474892d94cd49/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/74128da7135fb9a9c1c05ab66cc474892d94cd49/SharpenEPI/sub-10_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/74128da7135fb9a9c1c05ab66cc474892d94cd49/SharpenEPI/sub-10_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/74128da7135fb9a9c1c05ab66cc474892d94cd49/SharpenEPI/sub-10_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:18:26 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:18:26 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/74128da7135fb9a9c1c05ab66cc474892d94cd49/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:18:26 | INFO | niworkflows | Generating visual report
2025-09-17 07:18:39 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 99.005401s.
2025-09-17 07:18:40 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/74128da7135fb9a9c1c05ab66cc474892d94cd49/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:18:40 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:18:46 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.303214s.
2025-09-17 07:18:46 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/74128da7135fb9a9c1c05ab66cc474892d94cd49/smoothness/mapflow/_smoothness0".
2025-09-17 07:18:46 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:18:47 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.294621s.
2025-09-17 07:18:48 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/74128da7135fb9a9c1c05ab66cc474892d94cd49/outliers/mapflow/_outliers0".
2025-09-17 07:18:48 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:18:50 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.13158s.
2025-09-17 07:18:50 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/74128da7135fb9a9c1c05ab66cc474892d94cd49/gcor/mapflow/_gcor0".
2025-09-17 07:18:50 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:18:52 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.8195999999999999s.
2025-09-17 07:18:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/dilated_mask".
2025-09-17 07:18:52 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:18:52 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.008596s.
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:18:55 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.915964s.
2025-09-17 07:18:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/PlotBrainmask".
2025-09-17 07:18:56 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:18:57 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 0.990263s.
2025-09-17 07:18:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/final_masked".
2025-09-17 07:18:58 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:18:58 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.020202s.
2025-09-17 07:19:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/ResampleSegmentation".
2025-09-17 07:19:00 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:01 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.073058s.
2025-09-17 07:19:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/ds_report_norm".
2025-09-17 07:19:02 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:02 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004623s.
2025-09-17 07:19:02 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/measures/mapflow/_measures0".
2025-09-17 07:19:02 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:03 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.584807s.
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.017019s.
2025-09-17 07:19:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/subtract_mask".
2025-09-17 07:19:06 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:06 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.013429s.
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004752s.
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/ds_report_bmask".
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004525s.
2025-09-17 07:19:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/202625ac59407d2c6904c77b6d111d779a22a83d/final_masked".
2025-09-17 07:19:09 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:09 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.020169s.
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/202625ac59407d2c6904c77b6d111d779a22a83d/ResampleSegmentation".
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:11 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.994619s.
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/ds_report_norm".
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004743s.
2025-09-17 07:19:13 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/202625ac59407d2c6904c77b6d111d779a22a83d/measures/mapflow/_measures0".
2025-09-17 07:19:13 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:13 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.541157s.
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/202625ac59407d2c6904c77b6d111d779a22a83d/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.010179s.
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/subtract_mask".
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.013893s.
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004662s.
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/ds_report_bmask".
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004548s.
2025-09-17 07:19:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/final_masked".
2025-09-17 07:19:19 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:19 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.019811s.
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/74128da7135fb9a9c1c05ab66cc474892d94cd49/ResampleSegmentation".
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:21 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.016137s.
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/ds_report_norm".
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004747s.
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/74128da7135fb9a9c1c05ab66cc474892d94cd49/measures/mapflow/_measures0".
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:23 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.568396s.
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/74128da7135fb9a9c1c05ab66cc474892d94cd49/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.015868s.
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/subtract_mask".
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.009476s.
2025-09-17 07:19:28 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:28 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:28 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004944s.
2025-09-17 07:19:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/ds_report_bmask".
2025-09-17 07:19:28 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:28 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004688s.
2025-09-17 07:19:29 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/datasink/mapflow/_datasink0".
2025-09-17 07:19:29 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:19:29 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000569s.
2025-09-17 07:19:29 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:19:29 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:29 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004201s.
2025-09-17 07:19:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/parcels".
2025-09-17 07:19:29 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:29 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.015743s.
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/202625ac59407d2c6904c77b6d111d779a22a83d/datasink/mapflow/_datasink0".
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.00042s.
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/202625ac59407d2c6904c77b6d111d779a22a83d/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004306s.
2025-09-17 07:19:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/parcels".
2025-09-17 07:19:31 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:31 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.012932s.
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/74128da7135fb9a9c1c05ab66cc474892d94cd49/datasink/mapflow/_datasink0".
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000404s.
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/74128da7135fb9a9c1c05ab66cc474892d94cd49/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004115s.
2025-09-17 07:19:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/parcels".
2025-09-17 07:19:33 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:33 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.01099s.
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.697182s.
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.71977s.
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.810771s.
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/525922c2f9a29bf0bef9a11e1886aa7d5d22b2ea/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004845s.
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/202625ac59407d2c6904c77b6d111d779a22a83d/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004536s.
2025-09-17 07:19:41 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/74128da7135fb9a9c1c05ab66cc474892d94cd49/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:19:41 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:41 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004507s.
2025-09-17 07:19:41 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:19:41 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:19:45 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 4.167383s.
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:19:51 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 4.2463239999999995s.
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:19:57 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 4.222095s.
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/Enhance".
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:01 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.559691s.
2025-09-17 07:20:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/format_tpm_names".
2025-09-17 07:20:02 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 0.883376s.
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/Grad".
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:06 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 1.186108s.
2025-09-17 07:20:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/apply_mask".
2025-09-17 07:20:06 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:20:07 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.21787s.
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/GradientThreshold".
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:13 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 4.3194040000000005s.
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/segmentation".
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-09-17 07:20:56 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 41.995894s.
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/ArtifactMask".
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-09-17 07:21:00 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 1.151584s.
2025-09-17 07:21:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/PlotHeadmask".
2025-09-17 07:21:00 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:02 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 1.788744s.
2025-09-17 07:21:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/harmonize".
2025-09-17 07:21:02 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-09-17 07:21:03 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.600573s.
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/PlotSegmentation".
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:06 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 2.020166s.
2025-09-17 07:21:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/provenance".
2025-09-17 07:21:08 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 07:21:08 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.043779s.
2025-09-17 07:21:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/ComputeQI2".
2025-09-17 07:21:09 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-09-17 07:21:19 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 10.508409s.
2025-09-17 07:21:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotAirmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/PlotAirmask".
2025-09-17 07:21:20 | INFO | nipype.workflow | [Node] Executing "PlotAirmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:22 | INFO | nipype.workflow | [Node] Finished "PlotAirmask", elapsed time 1.755641s.
2025-09-17 07:21:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotArtmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/PlotArtmask".
2025-09-17 07:21:22 | INFO | nipype.workflow | [Node] Executing "PlotArtmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:24 | INFO | nipype.workflow | [Node] Finished "PlotArtmask", elapsed time 1.843262s.
2025-09-17 07:21:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_headmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/ds_report_headmask".
2025-09-17 07:21:24 | INFO | nipype.workflow | [Node] Executing "ds_report_headmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:24 | INFO | nipype.workflow | [Node] Finished "ds_report_headmask", elapsed time 0.004413s.
2025-09-17 07:21:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/measures".
2025-09-17 07:21:25 | INFO | nipype.workflow | [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
2025-09-17 07:21:28 | INFO | nipype.workflow | [Node] Finished "measures", elapsed time 3.751162s.
2025-09-17 07:21:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_segm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/ds_report_segm".
2025-09-17 07:21:28 | INFO | nipype.workflow | [Node] Executing "ds_report_segm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:28 | INFO | nipype.workflow | [Node] Finished "ds_report_segm", elapsed time 0.004193s.
2025-09-17 07:21:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_noisefit" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/ds_report_noisefit".
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Executing "ds_report_noisefit" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Finished "ds_report_noisefit", elapsed time 0.004175s.
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_airmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/ds_report_airmask".
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Executing "ds_report_airmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Finished "ds_report_airmask", elapsed time 0.004268s.
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_artmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/ds_report_artmask".
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Executing "ds_report_artmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Finished "ds_report_artmask", elapsed time 0.004252s.
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject10.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1841110..ds..sourcedata..raw..sub-10..anat..sub-10_T1w.nii.gz_metadata_FileSize0.0051050614565610886.FileSizeUnitsGB.NumberOfVolumes1/datasink".
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Finished "datasink", elapsed time 0.000479s.
2025-09-17 07:21:30 | INFO | nipype.workflow | Generating reports...
2025-09-17 07:21:31 | INFO | nipype.workflow | Report generation finished (4 reports).
2025-09-17 07:21:31 | IMPORTANT | mriqc | Participant level finished successfully averaging 00h 06min 11s per subject.
2025-09-17 07:21:31 | INFO | mriqc | Generating BIDS derivatives metadata.
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MRIQC completed (elapsed time 00h 24min 45s).
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