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ds000001-mriqc/logs/duct/sub-09_2025.09.17T08.56.24-2147734stdout
Felix Hoffstaedter dd548efc0c [DATALAD RUNCMD] Compute MRIQC for sub-09 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-09 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "e0514950-e780-4f0e-b0d2-b16e0a2cf2ea",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-09",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-09-17 09:22:27 +02:00

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------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_2140629/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-09-17 06:56:26 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-09-17 06:56:26 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-09-17 06:56:26 | IMPORTANT | mriqc | Extracting metadata and entities for 3 input runs of modality 'bold'...
2025-09-17 06:56:26 | IMPORTANT | mriqc | File size ('bold'): 0.05|0.05 GB [maximum|average].
2025-09-17 06:56:26 | INFO | mriqc | MRIQC config file: /tmp/config-20250917-065624_8a871b8c-e7db-452c-8e7e-976faa38e729.toml.
2025-09-17 06:56:31 | INFO | matplotlib.font_manager | generated new fontManager
2025-09-17 06:56:32 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-09-17 06:56:32 | INFO | nipype.workflow | Building functional MRIQC workflow for 3 BOLD runs..
2025-09-17 06:56:33 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-09-17 06:56:37 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-09-17 06:56:41 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-09-17 06:56:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/conform".
2025-09-17 06:56:41 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-09-17 06:56:42 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.269617s.
2025-09-17 06:56:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/8355eb13a836b6508bf7688c66368e13a2387a33/pick_echo".
2025-09-17 06:56:43 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:43 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000134s.
2025-09-17 06:56:45 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8355eb13a836b6508bf7688c66368e13a2387a33/provenance/mapflow/_provenance0".
2025-09-17 06:56:45 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:45 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.08506s.
2025-09-17 06:56:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/792610d11ec58725a3396a73333801fd71ad17ad/pick_echo".
2025-09-17 06:56:45 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:45 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000122s.
2025-09-17 06:56:47 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/792610d11ec58725a3396a73333801fd71ad17ad/provenance/mapflow/_provenance0".
2025-09-17 06:56:47 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:47 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.083724s.
2025-09-17 06:56:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/pick_echo".
2025-09-17 06:56:47 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:47 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000139s.
2025-09-17 06:56:49 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/provenance/mapflow/_provenance0".
2025-09-17 06:56:49 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:49 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.08398s.
2025-09-17 06:56:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/pre_clip".
2025-09-17 06:56:49 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 06:56:59 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 9.732904s.
2025-09-17 06:57:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/RotationMask".
2025-09-17 06:57:01 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-09-17 06:57:02 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.447002s.
2025-09-17 06:57:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicNoise".
2025-09-17 06:57:03 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 06:57:08 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.658205s.
2025-09-17 06:57:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/8355eb13a836b6508bf7688c66368e13a2387a33/non_steady_state_detector".
2025-09-17 06:57:09 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:09 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.192418s.
2025-09-17 06:57:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/792610d11ec58725a3396a73333801fd71ad17ad/non_steady_state_detector".
2025-09-17 06:57:11 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:11 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.189269s.
2025-09-17 06:57:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/non_steady_state_detector".
2025-09-17 06:57:13 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:13 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.189424s.
2025-09-17 06:57:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/pre_n4".
2025-09-17 06:57:15 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 06:58:17 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 61.584684s.
2025-09-17 06:58:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/ds_report_background".
2025-09-17 06:58:19 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 06:58:19 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.008077s.
2025-09-17 06:58:19 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/8355eb13a836b6508bf7688c66368e13a2387a33/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:19 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:19 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.040193s.
2025-09-17 06:58:21 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/792610d11ec58725a3396a73333801fd71ad17ad/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:21 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:21 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.040167s.
2025-09-17 06:58:23 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:23 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:25 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.109271s.
2025-09-17 06:58:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/synthstrip".
2025-09-17 06:58:27 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 06:59:03 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 36.013006s.
2025-09-17 06:59:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8355eb13a836b6508bf7688c66368e13a2387a33/estimate_hm".
2025-09-17 06:59:05 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:02:01 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 175.226206s.
2025-09-17 07:02:01 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:02:01 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:02:03 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.385156s.
2025-09-17 07:02:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/792610d11ec58725a3396a73333801fd71ad17ad/estimate_hm".
2025-09-17 07:02:03 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:05:00 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 176.366008s.
2025-09-17 07:05:01 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:05:01 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:05:03 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.413985s.
2025-09-17 07:05:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/estimate_hm".
2025-09-17 07:05:03 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:07:58 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 174.888697s.
2025-09-17 07:08:00 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:08:00 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:01 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.3568500000000001s.
2025-09-17 07:08:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/post_n4".
2025-09-17 07:08:02 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:08:16 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 14.366836s.
2025-09-17 07:08:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/smoothness".
2025-09-17 07:08:18 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:08:20 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 2.468777s.
2025-09-17 07:08:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicZoomed".
2025-09-17 07:08:22 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:25 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.609115s.
2025-09-17 07:08:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/PlotBrainmask".
2025-09-17 07:08:26 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:08:28 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 2.424414s.
2025-09-17 07:08:30 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8355eb13a836b6508bf7688c66368e13a2387a33/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:08:30 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:44 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 14.179508s.
2025-09-17 07:08:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8355eb13a836b6508bf7688c66368e13a2387a33/ComputeFD".
2025-09-17 07:08:46 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:08:46 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.00343s.
2025-09-17 07:08:48 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:08:48 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:08:48 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.676375s.
2025-09-17 07:08:50 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/792610d11ec58725a3396a73333801fd71ad17ad/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:08:50 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:09:04 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 14.249227s.
2025-09-17 07:09:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/792610d11ec58725a3396a73333801fd71ad17ad/ComputeFD".
2025-09-17 07:09:06 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:09:06 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.003274s.
2025-09-17 07:09:08 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:08 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:08 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.67892s.
2025-09-17 07:09:10 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:09:10 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:09:24 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.897228s.
2025-09-17 07:09:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/ComputeFD".
2025-09-17 07:09:24 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:09:24 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.006563s.
2025-09-17 07:09:26 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:26 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:26 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.620441s.
2025-09-17 07:09:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/final_masked".
2025-09-17 07:09:28 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:09:28 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.218535s.
2025-09-17 07:09:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization".
2025-09-17 07:09:30 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:09:30 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:10:22 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-09-17 07:10:22 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:10:33 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:10:33 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-09-17 07:10:33 | INFO | niworkflows | Generating visual report
2025-09-17 07:10:47 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 77.173645s.
2025-09-17 07:10:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/ds_report_zoomed".
2025-09-17 07:10:48 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:48 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004395s.
2025-09-17 07:10:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/ds_report_bmask".
2025-09-17 07:10:48 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:48 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004235s.
2025-09-17 07:10:48 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/8355eb13a836b6508bf7688c66368e13a2387a33/mean/mapflow/_mean0".
2025-09-17 07:10:48 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:49 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.960105s.
2025-09-17 07:10:50 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/8355eb13a836b6508bf7688c66368e13a2387a33/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:10:50 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:10:50 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.666443s.
2025-09-17 07:10:52 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8355eb13a836b6508bf7688c66368e13a2387a33/quality/mapflow/_quality0".
2025-09-17 07:10:52 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:10:54 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.2714309999999998s.
2025-09-17 07:10:56 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/792610d11ec58725a3396a73333801fd71ad17ad/mean/mapflow/_mean0".
2025-09-17 07:10:56 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:57 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.919514s.
2025-09-17 07:10:58 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/792610d11ec58725a3396a73333801fd71ad17ad/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:10:58 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:10:58 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.641554s.
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/792610d11ec58725a3396a73333801fd71ad17ad/quality/mapflow/_quality0".
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:11:02 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.279404s.
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/mean/mapflow/_mean0".
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:11:05 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.882036s.
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.668187s.
2025-09-17 07:11:08 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/quality/mapflow/_quality0".
2025-09-17 07:11:08 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:11:10 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.301748s.
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/ds_report_norm".
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004363s.
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8355eb13a836b6508bf7688c66368e13a2387a33/pre_clip".
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.269841s.
2025-09-17 07:11:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8355eb13a836b6508bf7688c66368e13a2387a33/SharpenEPI".
2025-09-17 07:11:14 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:15 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.692323s.
2025-09-17 07:11:16 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:16 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:17 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.951051s.
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:19 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 1.021346s.
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:21 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 1.017033s.
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/792610d11ec58725a3396a73333801fd71ad17ad/pre_clip".
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.248431s.
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/792610d11ec58725a3396a73333801fd71ad17ad/SharpenEPI".
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:25 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.737066s.
2025-09-17 07:11:26 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:26 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:27 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.945563s.
2025-09-17 07:11:28 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:28 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:29 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 1.009839s.
2025-09-17 07:11:30 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:30 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 1.010295s.
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/pre_clip".
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.276294s.
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/SharpenEPI".
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.755861s.
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:37 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.959865s.
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 1.015123s.
2025-09-17 07:11:40 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:40 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:41 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 1.034379s.
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8355eb13a836b6508bf7688c66368e13a2387a33/pre_n4".
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:43 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.7628080000000002s.
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004848s.
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004691s.
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004807s.
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/792610d11ec58725a3396a73333801fd71ad17ad/pre_n4".
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.688496s.
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004706s.
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004557s.
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004622s.
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/pre_n4".
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:50 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.667522s.
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004656s.
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004748s.
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004652s.
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8355eb13a836b6508bf7688c66368e13a2387a33/synthstrip".
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:23 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 30.750094s.
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/792610d11ec58725a3396a73333801fd71ad17ad/synthstrip".
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:54 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 30.732907s.
2025-09-17 07:12:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/synthstrip".
2025-09-17 07:12:56 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:13:26 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 30.481825s.
2025-09-17 07:13:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8355eb13a836b6508bf7688c66368e13a2387a33/post_n4".
2025-09-17 07:13:28 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:13:29 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.786578s.
2025-09-17 07:13:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8355eb13a836b6508bf7688c66368e13a2387a33/EPI2MNI".
2025-09-17 07:13:30 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:13:30 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:13:55 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8355eb13a836b6508bf7688c66368e13a2387a33/EPI2MNI/stderr.nipype-init).
2025-09-17 07:13:55 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:13:55 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8355eb13a836b6508bf7688c66368e13a2387a33/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8355eb13a836b6508bf7688c66368e13a2387a33/SharpenEPI/sub-09_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8355eb13a836b6508bf7688c66368e13a2387a33/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8355eb13a836b6508bf7688c66368e13a2387a33/SharpenEPI/sub-09_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8355eb13a836b6508bf7688c66368e13a2387a33/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8355eb13a836b6508bf7688c66368e13a2387a33/SharpenEPI/sub-09_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8355eb13a836b6508bf7688c66368e13a2387a33/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:14:58 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:14:58 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8355eb13a836b6508bf7688c66368e13a2387a33/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:14:58 | INFO | niworkflows | Generating visual report
2025-09-17 07:15:12 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 102.194286s.
2025-09-17 07:15:14 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8355eb13a836b6508bf7688c66368e13a2387a33/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:15:14 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:15:19 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.116721s.
2025-09-17 07:15:20 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8355eb13a836b6508bf7688c66368e13a2387a33/smoothness/mapflow/_smoothness0".
2025-09-17 07:15:20 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:15:20 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.247815s.
2025-09-17 07:15:22 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8355eb13a836b6508bf7688c66368e13a2387a33/outliers/mapflow/_outliers0".
2025-09-17 07:15:22 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:15:23 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.14165s.
2025-09-17 07:15:24 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8355eb13a836b6508bf7688c66368e13a2387a33/gcor/mapflow/_gcor0".
2025-09-17 07:15:24 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:15:26 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.952531s.
2025-09-17 07:15:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/dilated_mask".
2025-09-17 07:15:28 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:15:28 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.012432s.
2025-09-17 07:15:30 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:15:30 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:15:31 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.951498s.
2025-09-17 07:15:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/PlotBrainmask".
2025-09-17 07:15:32 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:15:33 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.195562s.
2025-09-17 07:15:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/792610d11ec58725a3396a73333801fd71ad17ad/post_n4".
2025-09-17 07:15:34 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:15:35 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.788223s.
2025-09-17 07:15:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/792610d11ec58725a3396a73333801fd71ad17ad/EPI2MNI".
2025-09-17 07:15:36 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:15:36 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:16:02 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/792610d11ec58725a3396a73333801fd71ad17ad/EPI2MNI/stderr.nipype-init).
2025-09-17 07:16:02 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:16:02 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/792610d11ec58725a3396a73333801fd71ad17ad/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/792610d11ec58725a3396a73333801fd71ad17ad/SharpenEPI/sub-09_task-balloonanalogrisktask_run-02_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/792610d11ec58725a3396a73333801fd71ad17ad/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/792610d11ec58725a3396a73333801fd71ad17ad/SharpenEPI/sub-09_task-balloonanalogrisktask_run-02_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/792610d11ec58725a3396a73333801fd71ad17ad/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/792610d11ec58725a3396a73333801fd71ad17ad/SharpenEPI/sub-09_task-balloonanalogrisktask_run-02_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/792610d11ec58725a3396a73333801fd71ad17ad/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:17:05 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:17:05 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/792610d11ec58725a3396a73333801fd71ad17ad/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:17:05 | INFO | niworkflows | Generating visual report
2025-09-17 07:17:19 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 103.410428s.
2025-09-17 07:17:20 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/792610d11ec58725a3396a73333801fd71ad17ad/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:17:20 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:17:25 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.265926s.
2025-09-17 07:17:26 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/792610d11ec58725a3396a73333801fd71ad17ad/smoothness/mapflow/_smoothness0".
2025-09-17 07:17:26 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:17:26 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.252872s.
2025-09-17 07:17:28 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/792610d11ec58725a3396a73333801fd71ad17ad/outliers/mapflow/_outliers0".
2025-09-17 07:17:28 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:17:29 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.15419s.
2025-09-17 07:17:30 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/792610d11ec58725a3396a73333801fd71ad17ad/gcor/mapflow/_gcor0".
2025-09-17 07:17:30 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:17:32 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.874133s.
2025-09-17 07:17:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/dilated_mask".
2025-09-17 07:17:32 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:17:32 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013893s.
2025-09-17 07:17:34 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:17:34 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:17:35 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.948114s.
2025-09-17 07:17:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/PlotBrainmask".
2025-09-17 07:17:36 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:17:37 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.203956s.
2025-09-17 07:17:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/post_n4".
2025-09-17 07:17:38 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:17:39 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.780123s.
2025-09-17 07:17:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/EPI2MNI".
2025-09-17 07:17:40 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:17:40 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:18:05 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:18:05 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/SharpenEPI/sub-09_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/SharpenEPI/sub-09_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/SharpenEPI/sub-09_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:19:12 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:19:12 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:19:12 | INFO | niworkflows | Generating visual report
2025-09-17 07:19:25 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 105.498407s.
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:19:31 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.244505s.
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/smoothness/mapflow/_smoothness0".
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.307114s.
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/outliers/mapflow/_outliers0".
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:19:35 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.141325s.
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/gcor/mapflow/_gcor0".
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.8506369999999999s.
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/dilated_mask".
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013769s.
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:19:41 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.946002s.
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/PlotBrainmask".
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.195341s.
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8355eb13a836b6508bf7688c66368e13a2387a33/final_masked".
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.016977s.
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8355eb13a836b6508bf7688c66368e13a2387a33/ResampleSegmentation".
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:47 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.14295s.
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/ds_report_norm".
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004582s.
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8355eb13a836b6508bf7688c66368e13a2387a33/measures/mapflow/_measures0".
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:49 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.580086s.
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8355eb13a836b6508bf7688c66368e13a2387a33/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.017865s.
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/subtract_mask".
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.01391s.
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004625s.
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/ds_report_bmask".
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004624s.
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/792610d11ec58725a3396a73333801fd71ad17ad/final_masked".
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.02014s.
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/792610d11ec58725a3396a73333801fd71ad17ad/ResampleSegmentation".
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:57 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.100322s.
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/ds_report_norm".
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004517s.
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/792610d11ec58725a3396a73333801fd71ad17ad/measures/mapflow/_measures0".
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:59 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.585561s.
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/792610d11ec58725a3396a73333801fd71ad17ad/timeseries/mapflow/_timeseries0".
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.014169s.
2025-09-17 07:20:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/subtract_mask".
2025-09-17 07:20:02 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:20:02 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.014283s.
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004845s.
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/ds_report_bmask".
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004555s.
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/final_masked".
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.020017s.
2025-09-17 07:20:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/ResampleSegmentation".
2025-09-17 07:20:06 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:20:07 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.126357s.
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/ds_report_norm".
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004752s.
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/measures/mapflow/_measures0".
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:20:09 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.578248s.
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/timeseries/mapflow/_timeseries0".
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.014243s.
2025-09-17 07:20:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/subtract_mask".
2025-09-17 07:20:12 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:20:12 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.013363s.
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004911s.
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/ds_report_bmask".
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.00459s.
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8355eb13a836b6508bf7688c66368e13a2387a33/datasink/mapflow/_datasink0".
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000572s.
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8355eb13a836b6508bf7688c66368e13a2387a33/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.00424s.
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/parcels".
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.015129s.
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/792610d11ec58725a3396a73333801fd71ad17ad/datasink/mapflow/_datasink0".
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000418s.
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/792610d11ec58725a3396a73333801fd71ad17ad/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004216s.
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/parcels".
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.014963s.
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/datasink/mapflow/_datasink0".
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000409s.
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004224s.
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/parcels".
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.013327s.
2025-09-17 07:20:20 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:20 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.770814s.
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.76651s.
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.909621s.
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8355eb13a836b6508bf7688c66368e13a2387a33/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004475s.
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/792610d11ec58725a3396a73333801fd71ad17ad/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004572s.
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8d2f30639ebf720e5c34a11b4c79db4ba53f5dbf/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004361s.
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:33 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 4.499653s.
2025-09-17 07:20:34 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:20:34 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:38 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 4.447995s.
2025-09-17 07:20:40 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:20:40 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 4.375935s.
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-09-17 07:20:46 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-09-17 07:20:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/Enhance".
2025-09-17 07:20:48 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:48 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.537498s.
2025-09-17 07:20:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/format_tpm_names".
2025-09-17 07:20:50 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:51 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 0.913743s.
2025-09-17 07:20:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/Grad".
2025-09-17 07:20:52 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:53 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 1.2582s.
2025-09-17 07:20:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/apply_mask".
2025-09-17 07:20:54 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:20:54 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.24433s.
2025-09-17 07:20:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/GradientThreshold".
2025-09-17 07:20:56 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:21:00 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 4.53908s.
2025-09-17 07:21:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/segmentation".
2025-09-17 07:21:02 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 43.907295s.
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/ArtifactMask".
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 1.186154s.
2025-09-17 07:21:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/PlotHeadmask".
2025-09-17 07:21:48 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:50 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 1.9539330000000001s.
2025-09-17 07:21:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/harmonize".
2025-09-17 07:21:52 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-09-17 07:21:52 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.572048s.
2025-09-17 07:21:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/PlotSegmentation".
2025-09-17 07:21:54 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:56 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 2.188878s.
2025-09-17 07:21:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/provenance".
2025-09-17 07:21:58 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 07:21:58 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.070747s.
2025-09-17 07:21:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/ComputeQI2".
2025-09-17 07:21:58 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-09-17 07:22:09 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 10.486241s.
2025-09-17 07:22:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotAirmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/PlotAirmask".
2025-09-17 07:22:10 | INFO | nipype.workflow | [Node] Executing "PlotAirmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:22:12 | INFO | nipype.workflow | [Node] Finished "PlotAirmask", elapsed time 1.959211s.
2025-09-17 07:22:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotArtmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/PlotArtmask".
2025-09-17 07:22:14 | INFO | nipype.workflow | [Node] Executing "PlotArtmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:22:16 | INFO | nipype.workflow | [Node] Finished "PlotArtmask", elapsed time 2.016024s.
2025-09-17 07:22:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_headmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/ds_report_headmask".
2025-09-17 07:22:18 | INFO | nipype.workflow | [Node] Executing "ds_report_headmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:18 | INFO | nipype.workflow | [Node] Finished "ds_report_headmask", elapsed time 0.0044s.
2025-09-17 07:22:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/measures".
2025-09-17 07:22:18 | INFO | nipype.workflow | [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Finished "measures", elapsed time 3.754592s.
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_segm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/ds_report_segm".
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Executing "ds_report_segm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Finished "ds_report_segm", elapsed time 0.00433s.
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_noisefit" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/ds_report_noisefit".
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Executing "ds_report_noisefit" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Finished "ds_report_noisefit", elapsed time 0.004305s.
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_airmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/ds_report_airmask".
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Executing "ds_report_airmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Finished "ds_report_airmask", elapsed time 0.004154s.
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_artmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/ds_report_artmask".
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Executing "ds_report_artmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Finished "ds_report_artmask", elapsed time 0.004271s.
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject09.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2140629..ds..sourcedata..raw..sub-09..anat..sub-09_T1w.nii.gz_metadata_FileSize0.005467153154313564.FileSizeUnitsGB.NumberOfVolumes1/datasink".
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Finished "datasink", elapsed time 0.000478s.
2025-09-17 07:22:24 | INFO | nipype.workflow | Generating reports...
2025-09-17 07:22:25 | INFO | nipype.workflow | Report generation finished (4 reports).
2025-09-17 07:22:25 | IMPORTANT | mriqc | Participant level finished successfully averaging 00h 06min 30s per subject.
2025-09-17 07:22:25 | INFO | mriqc | Generating BIDS derivatives metadata.
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MRIQC completed (elapsed time 00h 26min 00s).
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