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ds000001-mriqc/logs/duct/sub-08_2025.09.17T08.56.56-1731554stdout
Felix Hoffstaedter bd06041602 [DATALAD RUNCMD] Compute MRIQC for sub-08 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-08 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "e0514950-e780-4f0e-b0d2-b16e0a2cf2ea",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-08",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-09-17 09:22:38 +02:00

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------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_1725233/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-09-17 06:56:58 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-09-17 06:56:58 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-09-17 06:56:58 | IMPORTANT | mriqc | Extracting metadata and entities for 3 input runs of modality 'bold'...
2025-09-17 06:56:58 | IMPORTANT | mriqc | File size ('bold'): 0.05|0.05 GB [maximum|average].
2025-09-17 06:56:58 | INFO | mriqc | MRIQC config file: /tmp/config-20250917-065657_fb769179-99e9-4fa5-aee7-28080d2966c5.toml.
2025-09-17 06:57:02 | INFO | matplotlib.font_manager | generated new fontManager
2025-09-17 06:57:03 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-09-17 06:57:03 | INFO | nipype.workflow | Building functional MRIQC workflow for 3 BOLD runs..
2025-09-17 06:57:04 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-09-17 06:57:07 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-09-17 06:57:11 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-09-17 06:57:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/conform".
2025-09-17 06:57:11 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-09-17 06:57:11 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.250318s.
2025-09-17 06:57:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/pick_echo".
2025-09-17 06:57:13 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:57:13 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.00012s.
2025-09-17 06:57:15 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/provenance/mapflow/_provenance0".
2025-09-17 06:57:15 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:57:15 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.071362s.
2025-09-17 06:57:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/pick_echo".
2025-09-17 06:57:15 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:57:15 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 9.6e-05s.
2025-09-17 06:57:17 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/provenance/mapflow/_provenance0".
2025-09-17 06:57:17 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:57:17 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.070163s.
2025-09-17 06:57:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/210e8a985515896db82a41917df24c3937ed68b0/pick_echo".
2025-09-17 06:57:17 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:57:17 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000109s.
2025-09-17 06:57:19 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/210e8a985515896db82a41917df24c3937ed68b0/provenance/mapflow/_provenance0".
2025-09-17 06:57:19 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:57:19 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.070715s.
2025-09-17 06:57:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/pre_clip".
2025-09-17 06:57:19 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 06:57:28 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 8.562595s.
2025-09-17 06:57:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/RotationMask".
2025-09-17 06:57:29 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-09-17 06:57:30 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.437474s.
2025-09-17 06:57:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicNoise".
2025-09-17 06:57:31 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 06:57:35 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.066692s.
2025-09-17 06:57:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/non_steady_state_detector".
2025-09-17 06:57:37 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:37 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.186935s.
2025-09-17 06:57:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/non_steady_state_detector".
2025-09-17 06:57:39 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:39 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.18494s.
2025-09-17 06:57:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/210e8a985515896db82a41917df24c3937ed68b0/non_steady_state_detector".
2025-09-17 06:57:41 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:41 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.182266s.
2025-09-17 06:57:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/pre_n4".
2025-09-17 06:57:43 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 06:58:36 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 52.226285s.
2025-09-17 06:58:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/ds_report_background".
2025-09-17 06:58:37 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 06:58:37 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.007013s.
2025-09-17 06:58:37 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:37 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:39 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.02509s.
2025-09-17 06:58:41 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:41 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:43 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.018308s.
2025-09-17 06:58:45 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/210e8a985515896db82a41917df24c3937ed68b0/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:45 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:47 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.026228s.
2025-09-17 06:58:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/synthstrip".
2025-09-17 06:58:49 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 06:59:28 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 39.159301s.
2025-09-17 06:59:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/estimate_hm".
2025-09-17 06:59:29 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:02:34 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 184.744812s.
2025-09-17 07:02:35 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:02:35 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:02:37 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.315258s.
2025-09-17 07:02:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/estimate_hm".
2025-09-17 07:02:37 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:05:38 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 181.034555s.
2025-09-17 07:05:39 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:05:39 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:05:41 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.306851s.
2025-09-17 07:05:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/210e8a985515896db82a41917df24c3937ed68b0/estimate_hm".
2025-09-17 07:05:41 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:08:45 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 183.440344s.
2025-09-17 07:08:45 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:08:45 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:47 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.296074s.
2025-09-17 07:08:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/post_n4".
2025-09-17 07:08:47 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:09:00 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 12.033569s.
2025-09-17 07:09:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/smoothness".
2025-09-17 07:09:01 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:09:04 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 2.171142s.
2025-09-17 07:09:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicZoomed".
2025-09-17 07:09:06 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:09:09 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.068697s.
2025-09-17 07:09:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/PlotBrainmask".
2025-09-17 07:09:09 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:09:12 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 2.30626s.
2025-09-17 07:09:13 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:09:13 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:09:27 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.308615s.
2025-09-17 07:09:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/ComputeFD".
2025-09-17 07:09:28 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:09:28 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.003219s.
2025-09-17 07:09:30 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:30 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:30 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.586541s.
2025-09-17 07:09:32 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:09:32 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:09:45 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.247353s.
2025-09-17 07:09:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/ComputeFD".
2025-09-17 07:09:46 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:09:46 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.003139s.
2025-09-17 07:09:48 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:48 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:48 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.603731s.
2025-09-17 07:09:50 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/210e8a985515896db82a41917df24c3937ed68b0/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:09:50 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:10:03 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.293678s.
2025-09-17 07:10:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/210e8a985515896db82a41917df24c3937ed68b0/ComputeFD".
2025-09-17 07:10:04 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:10:04 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.00585s.
2025-09-17 07:10:06 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:10:06 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:10:06 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.589458s.
2025-09-17 07:10:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/final_masked".
2025-09-17 07:10:08 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:10:08 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.212605s.
2025-09-17 07:10:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization".
2025-09-17 07:10:10 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:10:10 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:10:57 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-09-17 07:10:57 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:11:08 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:11:09 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-09-17 07:11:09 | INFO | niworkflows | Generating visual report
2025-09-17 07:11:23 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 73.694551s.
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/ds_report_zoomed".
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.007947s.
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/ds_report_bmask".
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.003753s.
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/mean/mapflow/_mean0".
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:11:25 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.852946s.
2025-09-17 07:11:26 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:11:26 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:11:26 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.62967s.
2025-09-17 07:11:28 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/quality/mapflow/_quality0".
2025-09-17 07:11:28 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:11:30 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 1.9465970000000001s.
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/mean/mapflow/_mean0".
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.814731s.
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.638073s.
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/quality/mapflow/_quality0".
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 1.9237950000000001s.
2025-09-17 07:11:40 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/210e8a985515896db82a41917df24c3937ed68b0/mean/mapflow/_mean0".
2025-09-17 07:11:40 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:11:40 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.803751s.
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/210e8a985515896db82a41917df24c3937ed68b0/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.607404s.
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/210e8a985515896db82a41917df24c3937ed68b0/quality/mapflow/_quality0".
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 1.932542s.
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/ds_report_norm".
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.003803s.
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/pre_clip".
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:48 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.225869s.
2025-09-17 07:11:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/SharpenEPI".
2025-09-17 07:11:50 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:51 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.436574s.
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.807654s.
2025-09-17 07:11:54 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:54 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:54 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.850577s.
2025-09-17 07:11:56 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:56 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:56 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.859475s.
2025-09-17 07:11:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/pre_clip".
2025-09-17 07:11:58 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:58 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.228702s.
2025-09-17 07:12:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/SharpenEPI".
2025-09-17 07:12:00 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:01 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.516944s.
2025-09-17 07:12:02 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:12:02 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:02 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.812012s.
2025-09-17 07:12:04 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:12:04 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:04 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.858369s.
2025-09-17 07:12:06 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:12:06 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:06 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.860678s.
2025-09-17 07:12:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/210e8a985515896db82a41917df24c3937ed68b0/pre_clip".
2025-09-17 07:12:08 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:12:08 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.232951s.
2025-09-17 07:12:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/210e8a985515896db82a41917df24c3937ed68b0/SharpenEPI".
2025-09-17 07:12:10 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:11 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.49364s.
2025-09-17 07:12:12 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:12:12 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:12 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.808718s.
2025-09-17 07:12:14 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:12:14 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:14 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.863414s.
2025-09-17 07:12:16 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:12:16 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:16 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.843338s.
2025-09-17 07:12:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/pre_n4".
2025-09-17 07:12:18 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:19 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.471095s.
2025-09-17 07:12:20 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:12:20 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:20 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004233s.
2025-09-17 07:12:20 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:12:20 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:20 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004036s.
2025-09-17 07:12:20 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:12:20 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:20 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.003984s.
2025-09-17 07:12:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/pre_n4".
2025-09-17 07:12:20 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:21 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.4240300000000001s.
2025-09-17 07:12:22 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:12:22 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:22 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004055s.
2025-09-17 07:12:22 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:12:22 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:22 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.008076s.
2025-09-17 07:12:22 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:12:22 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:22 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004188s.
2025-09-17 07:12:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/210e8a985515896db82a41917df24c3937ed68b0/pre_n4".
2025-09-17 07:12:22 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:23 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.422386s.
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004064s.
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004189s.
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.00404s.
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/synthstrip".
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:57 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 32.969318s.
2025-09-17 07:12:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/synthstrip".
2025-09-17 07:12:58 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:13:31 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.033401s.
2025-09-17 07:13:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/210e8a985515896db82a41917df24c3937ed68b0/synthstrip".
2025-09-17 07:13:32 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:14:05 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.044092s.
2025-09-17 07:14:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/post_n4".
2025-09-17 07:14:06 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:14:06 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.674098s.
2025-09-17 07:14:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/EPI2MNI".
2025-09-17 07:14:08 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:14:08 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:14:30 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/EPI2MNI/stderr.nipype-init).
2025-09-17 07:14:30 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:14:30 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/SharpenEPI/sub-08_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/SharpenEPI/sub-08_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/SharpenEPI/sub-08_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:15:28 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:15:28 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:15:28 | INFO | niworkflows | Generating visual report
2025-09-17 07:15:42 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 94.494947s.
2025-09-17 07:15:44 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:15:44 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:15:49 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.303425s.
2025-09-17 07:15:50 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/smoothness/mapflow/_smoothness0".
2025-09-17 07:15:50 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:15:50 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.248654s.
2025-09-17 07:15:52 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/outliers/mapflow/_outliers0".
2025-09-17 07:15:52 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:15:53 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.051596s.
2025-09-17 07:15:54 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/gcor/mapflow/_gcor0".
2025-09-17 07:15:54 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:15:55 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.6471200000000001s.
2025-09-17 07:15:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/dilated_mask".
2025-09-17 07:15:56 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:15:56 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.012681s.
2025-09-17 07:15:58 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:15:58 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:15:58 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.79606s.
2025-09-17 07:16:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/PlotBrainmask".
2025-09-17 07:16:00 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:16:01 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.126219s.
2025-09-17 07:16:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/post_n4".
2025-09-17 07:16:02 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:16:02 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.706512s.
2025-09-17 07:16:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/EPI2MNI".
2025-09-17 07:16:04 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:16:04 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:16:25 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/EPI2MNI/stderr.nipype-init).
2025-09-17 07:16:25 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:16:25 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/SharpenEPI/sub-08_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/SharpenEPI/sub-08_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/SharpenEPI/sub-08_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:17:24 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:17:24 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:17:24 | INFO | niworkflows | Generating visual report
2025-09-17 07:17:38 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 94.032357s.
2025-09-17 07:17:40 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:17:40 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:17:45 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.286556s.
2025-09-17 07:17:46 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/smoothness/mapflow/_smoothness0".
2025-09-17 07:17:46 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:17:46 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.24943s.
2025-09-17 07:17:48 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/outliers/mapflow/_outliers0".
2025-09-17 07:17:48 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:17:49 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.028188s.
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/gcor/mapflow/_gcor0".
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:17:51 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.543871s.
2025-09-17 07:17:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/dilated_mask".
2025-09-17 07:17:52 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:17:52 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.012909s.
2025-09-17 07:17:54 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:17:54 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:17:55 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.820637s.
2025-09-17 07:17:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/PlotBrainmask".
2025-09-17 07:17:56 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:17:57 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.134434s.
2025-09-17 07:17:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/210e8a985515896db82a41917df24c3937ed68b0/post_n4".
2025-09-17 07:17:58 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:17:58 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.705896s.
2025-09-17 07:18:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/210e8a985515896db82a41917df24c3937ed68b0/EPI2MNI".
2025-09-17 07:18:00 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:18:00 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:18:23 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/210e8a985515896db82a41917df24c3937ed68b0/EPI2MNI/stderr.nipype-init).
2025-09-17 07:18:23 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:18:23 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/210e8a985515896db82a41917df24c3937ed68b0/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/210e8a985515896db82a41917df24c3937ed68b0/SharpenEPI/sub-08_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/210e8a985515896db82a41917df24c3937ed68b0/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/210e8a985515896db82a41917df24c3937ed68b0/SharpenEPI/sub-08_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/210e8a985515896db82a41917df24c3937ed68b0/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/210e8a985515896db82a41917df24c3937ed68b0/SharpenEPI/sub-08_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/210e8a985515896db82a41917df24c3937ed68b0/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:19:20 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:19:20 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/210e8a985515896db82a41917df24c3937ed68b0/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:19:20 | INFO | niworkflows | Generating visual report
2025-09-17 07:19:35 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 94.914729s.
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/210e8a985515896db82a41917df24c3937ed68b0/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:19:41 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.332889s.
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/210e8a985515896db82a41917df24c3937ed68b0/smoothness/mapflow/_smoothness0".
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.226386s.
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/210e8a985515896db82a41917df24c3937ed68b0/outliers/mapflow/_outliers0".
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:19:45 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.038573s.
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/210e8a985515896db82a41917df24c3937ed68b0/gcor/mapflow/_gcor0".
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:19:47 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.550678s.
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/dilated_mask".
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013884s.
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:19:51 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.815495s.
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/PlotBrainmask".
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:19:53 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.137156s.
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/final_masked".
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.019828s.
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/ResampleSegmentation".
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:57 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.978913s.
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/ds_report_norm".
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.00412s.
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/measures/mapflow/_measures0".
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.582623s.
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/timeseries/mapflow/_timeseries0".
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.019697s.
2025-09-17 07:20:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/subtract_mask".
2025-09-17 07:20:02 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:20:02 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.014681s.
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004195s.
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/ds_report_bmask".
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004148s.
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/final_masked".
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.019768s.
2025-09-17 07:20:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/ResampleSegmentation".
2025-09-17 07:20:06 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:20:07 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.947441s.
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/ds_report_norm".
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004206s.
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/measures/mapflow/_measures0".
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.53374s.
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/timeseries/mapflow/_timeseries0".
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.015641s.
2025-09-17 07:20:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/subtract_mask".
2025-09-17 07:20:12 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:20:12 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.013184s.
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004067s.
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/ds_report_bmask".
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004149s.
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/210e8a985515896db82a41917df24c3937ed68b0/final_masked".
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.01922s.
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/210e8a985515896db82a41917df24c3937ed68b0/ResampleSegmentation".
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:20:17 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.957285s.
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/ds_report_norm".
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004161s.
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/210e8a985515896db82a41917df24c3937ed68b0/measures/mapflow/_measures0".
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.557729s.
2025-09-17 07:20:20 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/210e8a985515896db82a41917df24c3937ed68b0/timeseries/mapflow/_timeseries0".
2025-09-17 07:20:20 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:20:20 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.015838s.
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/subtract_mask".
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.01317s.
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004143s.
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/ds_report_bmask".
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004039s.
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/datasink/mapflow/_datasink0".
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000434s.
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.007368s.
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/parcels".
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.014972s.
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/datasink/mapflow/_datasink0".
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.00035s.
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.0035s.
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/parcels".
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.014555s.
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/210e8a985515896db82a41917df24c3937ed68b0/datasink/mapflow/_datasink0".
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000331s.
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/210e8a985515896db82a41917df24c3937ed68b0/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.003486s.
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/parcels".
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.013033s.
2025-09-17 07:20:30 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:30 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:34 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 3.839767s.
2025-09-17 07:20:34 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:34 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:38 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 3.764786s.
2025-09-17 07:20:38 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:38 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 3.906516s.
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8da6dc0310f9cfce2ccf35be4a747c5ba82ee49b/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.00405s.
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8424cee3df18d6e7cf2f9957cc4311f50bc877f8/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.0041s.
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/210e8a985515896db82a41917df24c3937ed68b0/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.003883s.
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:48 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 3.792227s.
2025-09-17 07:20:50 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:20:50 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:54 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 3.833726s.
2025-09-17 07:20:54 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:20:54 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 3.813589s.
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-09-17 07:20:58 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-09-17 07:21:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/Enhance".
2025-09-17 07:21:00 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:21:00 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.527712s.
2025-09-17 07:21:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/format_tpm_names".
2025-09-17 07:21:02 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:21:03 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 0.829743s.
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/Grad".
2025-09-17 07:21:04 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:21:05 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 1.337764s.
2025-09-17 07:21:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/apply_mask".
2025-09-17 07:21:06 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:21:06 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.212904s.
2025-09-17 07:21:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/GradientThreshold".
2025-09-17 07:21:08 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:21:12 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 4.222427s.
2025-09-17 07:21:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/segmentation".
2025-09-17 07:21:14 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-09-17 07:21:54 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 40.121182s.
2025-09-17 07:21:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/ArtifactMask".
2025-09-17 07:21:56 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-09-17 07:21:57 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 1.306584s.
2025-09-17 07:21:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/PlotHeadmask".
2025-09-17 07:21:58 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 1.927862s.
2025-09-17 07:22:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/harmonize".
2025-09-17 07:22:02 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-09-17 07:22:02 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.672599s.
2025-09-17 07:22:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/PlotSegmentation".
2025-09-17 07:22:04 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:22:06 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 2.211351s.
2025-09-17 07:22:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/provenance".
2025-09-17 07:22:08 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 07:22:08 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.038853s.
2025-09-17 07:22:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/ComputeQI2".
2025-09-17 07:22:08 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-09-17 07:22:18 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 10.323589s.
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotAirmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/PlotAirmask".
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Executing "PlotAirmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Finished "PlotAirmask", elapsed time 1.912775s.
2025-09-17 07:22:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotArtmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/PlotArtmask".
2025-09-17 07:22:24 | INFO | nipype.workflow | [Node] Executing "PlotArtmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:22:26 | INFO | nipype.workflow | [Node] Finished "PlotArtmask", elapsed time 1.962923s.
2025-09-17 07:22:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_headmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/ds_report_headmask".
2025-09-17 07:22:28 | INFO | nipype.workflow | [Node] Executing "ds_report_headmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:28 | INFO | nipype.workflow | [Node] Finished "ds_report_headmask", elapsed time 0.003807s.
2025-09-17 07:22:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/measures".
2025-09-17 07:22:28 | INFO | nipype.workflow | [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
2025-09-17 07:22:32 | INFO | nipype.workflow | [Node] Finished "measures", elapsed time 4.359266s.
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_segm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/ds_report_segm".
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Executing "ds_report_segm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Finished "ds_report_segm", elapsed time 0.00393s.
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_noisefit" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/ds_report_noisefit".
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Executing "ds_report_noisefit" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Finished "ds_report_noisefit", elapsed time 0.003859s.
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_airmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/ds_report_airmask".
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Executing "ds_report_airmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Finished "ds_report_airmask", elapsed time 0.003841s.
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_artmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/ds_report_artmask".
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Executing "ds_report_artmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Finished "ds_report_artmask", elapsed time 0.00381s.
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject08.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1725233..ds..sourcedata..raw..sub-08..anat..sub-08_T1w.nii.gz_metadata_FileSize0.005299655720591545.FileSizeUnitsGB.NumberOfVolumes1/datasink".
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Finished "datasink", elapsed time 0.000388s.
2025-09-17 07:22:36 | INFO | nipype.workflow | Generating reports...
2025-09-17 07:22:36 | INFO | nipype.workflow | Report generation finished (4 reports).
2025-09-17 07:22:36 | IMPORTANT | mriqc | Participant level finished successfully averaging 00h 06min 24s per subject.
2025-09-17 07:22:36 | INFO | mriqc | Generating BIDS derivatives metadata.
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MRIQC completed (elapsed time 00h 25min 39s).
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