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ds000001-mriqc/logs/duct/sub-07_2025.09.17T08.56.47-131504stdout
Felix Hoffstaedter 4a2c446c88 [DATALAD RUNCMD] Compute MRIQC for sub-07 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-07 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "e0514950-e780-4f0e-b0d2-b16e0a2cf2ea",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-07",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-09-17 09:22:05 +02:00

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------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_123955/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-09-17 06:56:51 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-09-17 06:56:51 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-09-17 06:56:51 | IMPORTANT | mriqc | Extracting metadata and entities for 3 input runs of modality 'bold'...
2025-09-17 06:56:51 | IMPORTANT | mriqc | File size ('bold'): 0.05|0.05 GB [maximum|average].
2025-09-17 06:56:51 | INFO | mriqc | MRIQC config file: /tmp/config-20250917-065648_2c5caa85-9a67-4df3-82bf-59e4b0280214.toml.
2025-09-17 06:56:55 | INFO | matplotlib.font_manager | generated new fontManager
2025-09-17 06:56:56 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-09-17 06:56:56 | INFO | nipype.workflow | Building functional MRIQC workflow for 3 BOLD runs..
2025-09-17 06:56:57 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-09-17 06:57:01 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-09-17 06:57:05 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-09-17 06:57:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/conform".
2025-09-17 06:57:05 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-09-17 06:57:06 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.267454s.
2025-09-17 06:57:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/de1489e562162823f118389f616105da0fc9b8a1/pick_echo".
2025-09-17 06:57:07 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:57:07 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000153s.
2025-09-17 06:57:09 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/de1489e562162823f118389f616105da0fc9b8a1/provenance/mapflow/_provenance0".
2025-09-17 06:57:09 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:57:09 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.083042s.
2025-09-17 06:57:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/pick_echo".
2025-09-17 06:57:10 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:57:10 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000114s.
2025-09-17 06:57:11 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/provenance/mapflow/_provenance0".
2025-09-17 06:57:11 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:57:11 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.082371s.
2025-09-17 06:57:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/pick_echo".
2025-09-17 06:57:12 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:57:12 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000122s.
2025-09-17 06:57:13 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/provenance/mapflow/_provenance0".
2025-09-17 06:57:13 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:57:13 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.083946s.
2025-09-17 06:57:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/pre_clip".
2025-09-17 06:57:14 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 06:57:23 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 9.443364s.
2025-09-17 06:57:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/RotationMask".
2025-09-17 06:57:23 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-09-17 06:57:24 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.432944s.
2025-09-17 06:57:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicNoise".
2025-09-17 06:57:25 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 06:57:30 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.563368s.
2025-09-17 06:57:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/de1489e562162823f118389f616105da0fc9b8a1/non_steady_state_detector".
2025-09-17 06:57:31 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:32 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.194405s.
2025-09-17 06:57:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/non_steady_state_detector".
2025-09-17 06:57:33 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:34 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.191372s.
2025-09-17 06:57:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/non_steady_state_detector".
2025-09-17 06:57:35 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:36 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.188938s.
2025-09-17 06:57:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/pre_n4".
2025-09-17 06:57:37 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 06:58:39 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 61.080145s.
2025-09-17 06:58:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/ds_report_background".
2025-09-17 06:58:39 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 06:58:39 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.009536s.
2025-09-17 06:58:39 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/de1489e562162823f118389f616105da0fc9b8a1/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:39 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:42 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.112339s.
2025-09-17 06:58:43 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:43 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:46 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.153231s.
2025-09-17 06:58:47 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:47 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:47 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.039568s.
2025-09-17 06:58:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/synthstrip".
2025-09-17 06:58:49 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 06:59:26 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 36.249251s.
2025-09-17 06:59:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/de1489e562162823f118389f616105da0fc9b8a1/estimate_hm".
2025-09-17 06:59:27 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:02:20 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 172.187087s.
2025-09-17 07:02:21 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:02:21 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:02:23 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.190614s.
2025-09-17 07:02:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/estimate_hm".
2025-09-17 07:02:23 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:05:13 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 169.778306s.
2025-09-17 07:05:14 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:05:14 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:05:15 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.218174s.
2025-09-17 07:05:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/estimate_hm".
2025-09-17 07:05:16 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:08:06 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 170.844564s.
2025-09-17 07:08:08 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:08:08 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:09 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.239956s.
2025-09-17 07:08:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/post_n4".
2025-09-17 07:08:10 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:08:24 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 14.872411s.
2025-09-17 07:08:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/smoothness".
2025-09-17 07:08:26 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:08:28 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 2.4331490000000002s.
2025-09-17 07:08:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicZoomed".
2025-09-17 07:08:30 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:33 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.72584s.
2025-09-17 07:08:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/PlotBrainmask".
2025-09-17 07:08:34 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:08:36 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 2.246538s.
2025-09-17 07:08:38 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/de1489e562162823f118389f616105da0fc9b8a1/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:08:38 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:51 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.777147s.
2025-09-17 07:08:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/de1489e562162823f118389f616105da0fc9b8a1/ComputeFD".
2025-09-17 07:08:52 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:08:52 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.003227s.
2025-09-17 07:08:54 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:08:54 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:08:54 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.623622s.
2025-09-17 07:08:56 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:08:56 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:09:09 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.855962s.
2025-09-17 07:09:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/ComputeFD".
2025-09-17 07:09:10 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:09:10 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.006546s.
2025-09-17 07:09:12 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:12 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:12 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.600464s.
2025-09-17 07:09:14 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:09:14 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:09:28 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.990378s.
2025-09-17 07:09:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/ComputeFD".
2025-09-17 07:09:30 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:09:30 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.005816s.
2025-09-17 07:09:32 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:32 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:32 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.684549s.
2025-09-17 07:09:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/final_masked".
2025-09-17 07:09:34 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:09:34 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.2255s.
2025-09-17 07:09:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization".
2025-09-17 07:09:36 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:09:36 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:10:16 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/stderr.nipype-init).
2025-09-17 07:10:16 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-09-17 07:10:16 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:10:26 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:10:27 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-09-17 07:10:27 | INFO | niworkflows | Generating visual report
2025-09-17 07:10:40 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 64.385455s.
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/ds_report_zoomed".
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004319s.
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/ds_report_bmask".
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004214s.
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/de1489e562162823f118389f616105da0fc9b8a1/mean/mapflow/_mean0".
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:43 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.949s.
2025-09-17 07:10:44 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/de1489e562162823f118389f616105da0fc9b8a1/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:10:44 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:10:44 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.675245s.
2025-09-17 07:10:46 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/de1489e562162823f118389f616105da0fc9b8a1/quality/mapflow/_quality0".
2025-09-17 07:10:46 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:10:48 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.341241s.
2025-09-17 07:10:50 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/mean/mapflow/_mean0".
2025-09-17 07:10:50 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:51 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.896958s.
2025-09-17 07:10:52 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:10:52 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:10:52 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.661953s.
2025-09-17 07:10:54 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/quality/mapflow/_quality0".
2025-09-17 07:10:54 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:10:56 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.32807s.
2025-09-17 07:10:58 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/mean/mapflow/_mean0".
2025-09-17 07:10:58 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:59 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.9147s.
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.646407s.
2025-09-17 07:11:02 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/quality/mapflow/_quality0".
2025-09-17 07:11:02 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.3311640000000002s.
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/ds_report_norm".
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.00461s.
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/de1489e562162823f118389f616105da0fc9b8a1/pre_clip".
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.249585s.
2025-09-17 07:11:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/de1489e562162823f118389f616105da0fc9b8a1/SharpenEPI".
2025-09-17 07:11:08 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:09 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.674464s.
2025-09-17 07:11:10 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:10 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:11 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.900501s.
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:13 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.954644s.
2025-09-17 07:11:14 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:14 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:15 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.981094s.
2025-09-17 07:11:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/pre_clip".
2025-09-17 07:11:16 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:16 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.245263s.
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/SharpenEPI".
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:19 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.740226s.
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:21 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.871308s.
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:23 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.945125s.
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:25 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.961331s.
2025-09-17 07:11:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/pre_clip".
2025-09-17 07:11:26 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:26 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.252595s.
2025-09-17 07:11:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/SharpenEPI".
2025-09-17 07:11:28 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:29 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.735173s.
2025-09-17 07:11:30 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:30 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.876935s.
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:33 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.919305s.
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.967223s.
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/de1489e562162823f118389f616105da0fc9b8a1/pre_n4".
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:37 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.728766s.
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004672s.
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004521s.
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004494s.
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/pre_n4".
2025-09-17 07:11:38 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:40 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.63009s.
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004588s.
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004604s.
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.00462s.
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/pre_n4".
2025-09-17 07:11:42 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.640179s.
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004763s.
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004394s.
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004377s.
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/de1489e562162823f118389f616105da0fc9b8a1/synthstrip".
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:16 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 30.250524s.
2025-09-17 07:12:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/synthstrip".
2025-09-17 07:12:18 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:48 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 30.261404s.
2025-09-17 07:12:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/synthstrip".
2025-09-17 07:12:50 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:13:20 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 30.448892999999998s.
2025-09-17 07:13:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/de1489e562162823f118389f616105da0fc9b8a1/post_n4".
2025-09-17 07:13:22 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:13:23 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.81063s.
2025-09-17 07:13:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/de1489e562162823f118389f616105da0fc9b8a1/EPI2MNI".
2025-09-17 07:13:24 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:13:24 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:13:44 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:13:44 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/de1489e562162823f118389f616105da0fc9b8a1/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/de1489e562162823f118389f616105da0fc9b8a1/SharpenEPI/sub-07_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/de1489e562162823f118389f616105da0fc9b8a1/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/de1489e562162823f118389f616105da0fc9b8a1/SharpenEPI/sub-07_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/de1489e562162823f118389f616105da0fc9b8a1/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/de1489e562162823f118389f616105da0fc9b8a1/SharpenEPI/sub-07_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/de1489e562162823f118389f616105da0fc9b8a1/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:14:53 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:14:53 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/de1489e562162823f118389f616105da0fc9b8a1/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:14:53 | INFO | niworkflows | Generating visual report
2025-09-17 07:15:06 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 101.827098s.
2025-09-17 07:15:06 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/de1489e562162823f118389f616105da0fc9b8a1/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:15:06 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:15:12 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.80352s.
2025-09-17 07:15:12 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/de1489e562162823f118389f616105da0fc9b8a1/smoothness/mapflow/_smoothness0".
2025-09-17 07:15:12 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:15:12 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.25615s.
2025-09-17 07:15:14 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/de1489e562162823f118389f616105da0fc9b8a1/outliers/mapflow/_outliers0".
2025-09-17 07:15:14 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:15:15 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.1976s.
2025-09-17 07:15:16 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/de1489e562162823f118389f616105da0fc9b8a1/gcor/mapflow/_gcor0".
2025-09-17 07:15:16 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:15:18 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.97931s.
2025-09-17 07:15:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/dilated_mask".
2025-09-17 07:15:20 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:15:20 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.012321s.
2025-09-17 07:15:22 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:15:22 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:15:23 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.853092s.
2025-09-17 07:15:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/PlotBrainmask".
2025-09-17 07:15:24 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:15:25 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 0.964656s.
2025-09-17 07:15:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/post_n4".
2025-09-17 07:15:26 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:15:27 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.825139s.
2025-09-17 07:15:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/EPI2MNI".
2025-09-17 07:15:28 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:15:28 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:15:50 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:15:50 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/SharpenEPI/sub-07_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/SharpenEPI/sub-07_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/SharpenEPI/sub-07_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:16:52 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:16:52 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:16:52 | INFO | niworkflows | Generating visual report
2025-09-17 07:17:05 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 97.575386s.
2025-09-17 07:17:06 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:17:06 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:17:12 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.914229s.
2025-09-17 07:17:14 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/smoothness/mapflow/_smoothness0".
2025-09-17 07:17:14 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:17:14 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.267317s.
2025-09-17 07:17:16 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/outliers/mapflow/_outliers0".
2025-09-17 07:17:16 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:17:17 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.1957309999999999s.
2025-09-17 07:17:18 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/gcor/mapflow/_gcor0".
2025-09-17 07:17:18 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:17:20 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.8691119999999999s.
2025-09-17 07:17:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/dilated_mask".
2025-09-17 07:17:20 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:17:20 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.012839s.
2025-09-17 07:17:22 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:17:22 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:17:23 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.899678s.
2025-09-17 07:17:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/PlotBrainmask".
2025-09-17 07:17:24 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:17:25 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 0.957666s.
2025-09-17 07:17:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/post_n4".
2025-09-17 07:17:26 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:17:27 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.795653s.
2025-09-17 07:17:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/EPI2MNI".
2025-09-17 07:17:28 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:17:28 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:17:50 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:17:50 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/SharpenEPI/sub-07_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/SharpenEPI/sub-07_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/SharpenEPI/sub-07_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:18:54 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:18:54 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:18:54 | INFO | niworkflows | Generating visual report
2025-09-17 07:19:07 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 99.331437s.
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.798711s.
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/smoothness/mapflow/_smoothness0".
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.279997s.
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/outliers/mapflow/_outliers0".
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:19:17 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.195878s.
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/gcor/mapflow/_gcor0".
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.86538s.
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/dilated_mask".
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013436s.
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:19:23 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.900089s.
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/PlotBrainmask".
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:19:25 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 0.973373s.
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/de1489e562162823f118389f616105da0fc9b8a1/final_masked".
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.02052s.
2025-09-17 07:19:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/de1489e562162823f118389f616105da0fc9b8a1/ResampleSegmentation".
2025-09-17 07:19:28 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:29 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.102483s.
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/ds_report_norm".
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004594s.
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/de1489e562162823f118389f616105da0fc9b8a1/measures/mapflow/_measures0".
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:31 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.576836s.
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/de1489e562162823f118389f616105da0fc9b8a1/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.021327s.
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/subtract_mask".
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.014719s.
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004519s.
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/ds_report_bmask".
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004597s.
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/final_masked".
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.020155s.
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/ResampleSegmentation".
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:39 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.066399s.
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/ds_report_norm".
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004459s.
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/measures/mapflow/_measures0".
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:41 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.58672s.
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.016994s.
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/subtract_mask".
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:44 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.014711s.
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004781s.
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/ds_report_bmask".
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004601s.
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/final_masked".
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.019934s.
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/ResampleSegmentation".
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:49 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.043224s.
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/ds_report_norm".
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004485s.
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/measures/mapflow/_measures0".
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:51 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.584595s.
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.012624s.
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/subtract_mask".
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:54 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.013814s.
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004594s.
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/ds_report_bmask".
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004635s.
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/de1489e562162823f118389f616105da0fc9b8a1/datasink/mapflow/_datasink0".
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000562s.
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/de1489e562162823f118389f616105da0fc9b8a1/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.005471s.
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/parcels".
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.014347s.
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/datasink/mapflow/_datasink0".
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000413s.
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004139s.
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/parcels".
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.014883s.
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/datasink/mapflow/_datasink0".
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000517s.
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.00423s.
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/parcels".
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:00 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.013087s.
2025-09-17 07:20:02 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:02 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.800309s.
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:06 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.7312020000000001s.
2025-09-17 07:20:06 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:06 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.8864s.
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/de1489e562162823f118389f616105da0fc9b8a1/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.005196s.
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d43a9a06bc7c1dba06cd46fd1ca36874d60408aa/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.009138s.
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/a64529de7f19edf5bf7e04964eb43bffcd2cbf45/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004338s.
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 4.458055s.
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:20 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 4.474864s.
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:20:22 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 4.432037s.
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-09-17 07:20:28 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-09-17 07:20:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/Enhance".
2025-09-17 07:20:30 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:30 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.572929s.
2025-09-17 07:20:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/format_tpm_names".
2025-09-17 07:20:32 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:33 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 0.957694s.
2025-09-17 07:20:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/Grad".
2025-09-17 07:20:34 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:35 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 1.2568869999999999s.
2025-09-17 07:20:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/apply_mask".
2025-09-17 07:20:36 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:20:36 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.22628s.
2025-09-17 07:20:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/GradientThreshold".
2025-09-17 07:20:38 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:42 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 4.47081s.
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/segmentation".
2025-09-17 07:20:44 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 45.163239s.
2025-09-17 07:21:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/ArtifactMask".
2025-09-17 07:21:30 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-09-17 07:21:31 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 1.147526s.
2025-09-17 07:21:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/PlotHeadmask".
2025-09-17 07:21:32 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:34 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 1.831728s.
2025-09-17 07:21:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/harmonize".
2025-09-17 07:21:34 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-09-17 07:21:35 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.593763s.
2025-09-17 07:21:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/PlotSegmentation".
2025-09-17 07:21:36 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:38 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 2.088703s.
2025-09-17 07:21:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/provenance".
2025-09-17 07:21:40 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 07:21:40 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.044342s.
2025-09-17 07:21:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/ComputeQI2".
2025-09-17 07:21:40 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-09-17 07:21:51 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 10.746482s.
2025-09-17 07:21:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotAirmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/PlotAirmask".
2025-09-17 07:21:52 | INFO | nipype.workflow | [Node] Executing "PlotAirmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:54 | INFO | nipype.workflow | [Node] Finished "PlotAirmask", elapsed time 1.77051s.
2025-09-17 07:21:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotArtmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/PlotArtmask".
2025-09-17 07:21:54 | INFO | nipype.workflow | [Node] Executing "PlotArtmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:56 | INFO | nipype.workflow | [Node] Finished "PlotArtmask", elapsed time 1.8182610000000001s.
2025-09-17 07:21:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_headmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/ds_report_headmask".
2025-09-17 07:21:56 | INFO | nipype.workflow | [Node] Executing "ds_report_headmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:56 | INFO | nipype.workflow | [Node] Finished "ds_report_headmask", elapsed time 0.004209s.
2025-09-17 07:21:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/measures".
2025-09-17 07:21:56 | INFO | nipype.workflow | [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Finished "measures", elapsed time 3.760485s.
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_segm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/ds_report_segm".
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Executing "ds_report_segm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Finished "ds_report_segm", elapsed time 0.004485s.
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_noisefit" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/ds_report_noisefit".
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Executing "ds_report_noisefit" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Finished "ds_report_noisefit", elapsed time 0.004767s.
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_airmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/ds_report_airmask".
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Executing "ds_report_airmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Finished "ds_report_airmask", elapsed time 0.004141s.
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_artmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/ds_report_artmask".
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Executing "ds_report_artmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Finished "ds_report_artmask", elapsed time 0.004333s.
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject07.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_123955..ds..sourcedata..raw..sub-07..anat..sub-07_T1w.nii.gz_metadata_FileSize0.005507372319698334.FileSizeUnitsGB.NumberOfVolumes1/datasink".
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Finished "datasink", elapsed time 0.000483s.
2025-09-17 07:22:02 | INFO | nipype.workflow | Generating reports...
2025-09-17 07:22:03 | INFO | nipype.workflow | Report generation finished (4 reports).
2025-09-17 07:22:03 | IMPORTANT | mriqc | Participant level finished successfully averaging 00h 06min 18s per subject.
2025-09-17 07:22:03 | INFO | mriqc | Generating BIDS derivatives metadata.
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MRIQC completed (elapsed time 00h 25min 14s).
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