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ds000001-mriqc/logs/duct/sub-05_2025.09.17T08.55.58-1864563stdout
Felix Hoffstaedter c5443dab75 [DATALAD RUNCMD] Compute MRIQC for sub-05 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-05 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "e0514950-e780-4f0e-b0d2-b16e0a2cf2ea",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-05",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-09-17 09:21:50 +02:00

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------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_1859929/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-09-17 06:56:00 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-09-17 06:56:00 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-09-17 06:56:00 | IMPORTANT | mriqc | Extracting metadata and entities for 3 input runs of modality 'bold'...
2025-09-17 06:56:00 | IMPORTANT | mriqc | File size ('bold'): 0.05|0.05 GB [maximum|average].
2025-09-17 06:56:00 | INFO | mriqc | MRIQC config file: /tmp/config-20250917-065559_6792aa50-ea01-45c9-b8ef-9de823ad9dcc.toml.
2025-09-17 06:56:04 | INFO | matplotlib.font_manager | generated new fontManager
2025-09-17 06:56:05 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-09-17 06:56:05 | INFO | nipype.workflow | Building functional MRIQC workflow for 3 BOLD runs..
2025-09-17 06:56:06 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-09-17 06:56:09 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-09-17 06:56:13 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-09-17 06:56:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/conform".
2025-09-17 06:56:13 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-09-17 06:56:14 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.246494s.
2025-09-17 06:56:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/3b3a7ce7c541720afdfa56531a204f8454372850/pick_echo".
2025-09-17 06:56:15 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:15 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000111s.
2025-09-17 06:56:17 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3b3a7ce7c541720afdfa56531a204f8454372850/provenance/mapflow/_provenance0".
2025-09-17 06:56:17 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:17 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.072212s.
2025-09-17 06:56:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/2864fbe546c0078aeee40198bc426c07125884e2/pick_echo".
2025-09-17 06:56:18 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:18 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 9.8e-05s.
2025-09-17 06:56:19 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2864fbe546c0078aeee40198bc426c07125884e2/provenance/mapflow/_provenance0".
2025-09-17 06:56:19 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:19 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.071114s.
2025-09-17 06:56:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/caaf1085e46fbf2295cc489d73cab84dea13313f/pick_echo".
2025-09-17 06:56:20 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:20 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000101s.
2025-09-17 06:56:21 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caaf1085e46fbf2295cc489d73cab84dea13313f/provenance/mapflow/_provenance0".
2025-09-17 06:56:21 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:21 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.070675s.
2025-09-17 06:56:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/pre_clip".
2025-09-17 06:56:22 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 06:56:30 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 8.583352s.
2025-09-17 06:56:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/RotationMask".
2025-09-17 06:56:31 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-09-17 06:56:32 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.436556s.
2025-09-17 06:56:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicNoise".
2025-09-17 06:56:33 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 06:56:37 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.033531s.
2025-09-17 06:56:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/3b3a7ce7c541720afdfa56531a204f8454372850/non_steady_state_detector".
2025-09-17 06:56:39 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:56:40 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.190013s.
2025-09-17 06:56:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/2864fbe546c0078aeee40198bc426c07125884e2/non_steady_state_detector".
2025-09-17 06:56:41 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:56:42 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.184625s.
2025-09-17 06:56:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/caaf1085e46fbf2295cc489d73cab84dea13313f/non_steady_state_detector".
2025-09-17 06:56:43 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:56:44 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.186161s.
2025-09-17 06:56:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/pre_n4".
2025-09-17 06:56:45 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 06:57:39 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 52.875697s.
2025-09-17 06:57:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/ds_report_background".
2025-09-17 06:57:39 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 06:57:39 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.006992s.
2025-09-17 06:57:40 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/3b3a7ce7c541720afdfa56531a204f8454372850/sanitize/mapflow/_sanitize0".
2025-09-17 06:57:40 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:57:40 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.039199s.
2025-09-17 06:57:41 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/2864fbe546c0078aeee40198bc426c07125884e2/sanitize/mapflow/_sanitize0".
2025-09-17 06:57:41 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:57:43 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.054503s.
2025-09-17 06:57:45 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/caaf1085e46fbf2295cc489d73cab84dea13313f/sanitize/mapflow/_sanitize0".
2025-09-17 06:57:45 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:57:47 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.05049s.
2025-09-17 06:57:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/synthstrip".
2025-09-17 06:57:49 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 06:58:29 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 39.395103s.
2025-09-17 06:58:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/3b3a7ce7c541720afdfa56531a204f8454372850/estimate_hm".
2025-09-17 06:58:29 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:01:37 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 187.216089s.
2025-09-17 07:01:38 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:01:38 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:01:39 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.3930660000000001s.
2025-09-17 07:01:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/2864fbe546c0078aeee40198bc426c07125884e2/estimate_hm".
2025-09-17 07:01:40 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:04:46 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 186.152781s.
2025-09-17 07:04:48 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:04:48 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:04:49 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.2974510000000001s.
2025-09-17 07:04:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/caaf1085e46fbf2295cc489d73cab84dea13313f/estimate_hm".
2025-09-17 07:04:50 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:07:54 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 183.974108s.
2025-09-17 07:07:56 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:07:56 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:07:57 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.302084s.
2025-09-17 07:07:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/post_n4".
2025-09-17 07:07:58 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:08:10 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 12.538514s.
2025-09-17 07:08:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/smoothness".
2025-09-17 07:08:12 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:08:14 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 2.412058s.
2025-09-17 07:08:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicZoomed".
2025-09-17 07:08:16 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:19 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.230697s.
2025-09-17 07:08:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/PlotBrainmask".
2025-09-17 07:08:20 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:08:22 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 2.301539s.
2025-09-17 07:08:24 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/3b3a7ce7c541720afdfa56531a204f8454372850/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:08:24 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:37 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.584504s.
2025-09-17 07:08:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/3b3a7ce7c541720afdfa56531a204f8454372850/ComputeFD".
2025-09-17 07:08:38 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:08:38 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.00317s.
2025-09-17 07:08:40 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:08:40 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:08:40 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.648918s.
2025-09-17 07:08:42 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/2864fbe546c0078aeee40198bc426c07125884e2/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:08:42 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:55 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.392102s.
2025-09-17 07:08:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/2864fbe546c0078aeee40198bc426c07125884e2/ComputeFD".
2025-09-17 07:08:56 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:08:56 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.005695s.
2025-09-17 07:08:58 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:08:58 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:08:58 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.618492s.
2025-09-17 07:09:00 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/caaf1085e46fbf2295cc489d73cab84dea13313f/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:09:00 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:09:13 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.394927s.
2025-09-17 07:09:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/caaf1085e46fbf2295cc489d73cab84dea13313f/ComputeFD".
2025-09-17 07:09:14 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:09:14 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.005882s.
2025-09-17 07:09:16 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:16 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:16 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.596435s.
2025-09-17 07:09:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/final_masked".
2025-09-17 07:09:18 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:09:18 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.217755s.
2025-09-17 07:09:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization".
2025-09-17 07:09:20 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:09:20 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:10:09 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/stderr.nipype-init).
2025-09-17 07:10:09 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-09-17 07:10:09 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:10:20 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:10:21 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-09-17 07:10:21 | INFO | niworkflows | Generating visual report
2025-09-17 07:10:35 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 74.963291s.
2025-09-17 07:10:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/ds_report_zoomed".
2025-09-17 07:10:36 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:36 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.003951s.
2025-09-17 07:10:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/ds_report_bmask".
2025-09-17 07:10:36 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:36 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.003739s.
2025-09-17 07:10:36 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/3b3a7ce7c541720afdfa56531a204f8454372850/mean/mapflow/_mean0".
2025-09-17 07:10:36 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:37 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.854215s.
2025-09-17 07:10:38 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/3b3a7ce7c541720afdfa56531a204f8454372850/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:10:38 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:10:38 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.642614s.
2025-09-17 07:10:40 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3b3a7ce7c541720afdfa56531a204f8454372850/quality/mapflow/_quality0".
2025-09-17 07:10:40 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:10:42 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 1.959101s.
2025-09-17 07:10:44 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/2864fbe546c0078aeee40198bc426c07125884e2/mean/mapflow/_mean0".
2025-09-17 07:10:44 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:45 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.809068s.
2025-09-17 07:10:46 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/2864fbe546c0078aeee40198bc426c07125884e2/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:10:46 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:10:46 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.618716s.
2025-09-17 07:10:48 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2864fbe546c0078aeee40198bc426c07125884e2/quality/mapflow/_quality0".
2025-09-17 07:10:48 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:10:50 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 1.9364029999999999s.
2025-09-17 07:10:52 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/caaf1085e46fbf2295cc489d73cab84dea13313f/mean/mapflow/_mean0".
2025-09-17 07:10:52 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:53 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.779951s.
2025-09-17 07:10:54 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/caaf1085e46fbf2295cc489d73cab84dea13313f/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:10:54 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:10:54 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.644916s.
2025-09-17 07:10:56 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caaf1085e46fbf2295cc489d73cab84dea13313f/quality/mapflow/_quality0".
2025-09-17 07:10:56 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:10:58 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 1.9336039999999999s.
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/ds_report_norm".
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.00393s.
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3b3a7ce7c541720afdfa56531a204f8454372850/pre_clip".
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:00 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.251733s.
2025-09-17 07:11:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3b3a7ce7c541720afdfa56531a204f8454372850/SharpenEPI".
2025-09-17 07:11:02 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:03 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.4717609999999999s.
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:05 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.805741s.
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:07 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.84691s.
2025-09-17 07:11:08 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:08 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:09 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.859206s.
2025-09-17 07:11:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2864fbe546c0078aeee40198bc426c07125884e2/pre_clip".
2025-09-17 07:11:10 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:10 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.228964s.
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2864fbe546c0078aeee40198bc426c07125884e2/SharpenEPI".
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:13 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.493204s.
2025-09-17 07:11:14 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:14 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:15 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.783687s.
2025-09-17 07:11:16 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:16 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:17 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.829034s.
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:19 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.833252s.
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/pre_clip".
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:20 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.232769s.
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caaf1085e46fbf2295cc489d73cab84dea13313f/SharpenEPI".
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:23 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.523869s.
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:25 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.812485s.
2025-09-17 07:11:26 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:26 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:27 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.85364s.
2025-09-17 07:11:28 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:28 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:29 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.86682s.
2025-09-17 07:11:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3b3a7ce7c541720afdfa56531a204f8454372850/pre_n4".
2025-09-17 07:11:30 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.5159s.
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.00418s.
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.0041s.
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004023s.
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2864fbe546c0078aeee40198bc426c07125884e2/pre_n4".
2025-09-17 07:11:32 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.451138s.
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004046s.
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004174s.
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004118s.
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/pre_n4".
2025-09-17 07:11:34 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.450609s.
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004134s.
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.003998s.
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.003987s.
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3b3a7ce7c541720afdfa56531a204f8454372850/synthstrip".
2025-09-17 07:11:36 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:09 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.060022s.
2025-09-17 07:12:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2864fbe546c0078aeee40198bc426c07125884e2/synthstrip".
2025-09-17 07:12:10 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:43 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.189667s.
2025-09-17 07:12:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/synthstrip".
2025-09-17 07:12:44 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:13:17 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 33.116404s.
2025-09-17 07:13:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3b3a7ce7c541720afdfa56531a204f8454372850/post_n4".
2025-09-17 07:13:18 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:13:19 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.723817s.
2025-09-17 07:13:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3b3a7ce7c541720afdfa56531a204f8454372850/EPI2MNI".
2025-09-17 07:13:20 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:13:20 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:13:40 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:13:40 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3b3a7ce7c541720afdfa56531a204f8454372850/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3b3a7ce7c541720afdfa56531a204f8454372850/SharpenEPI/sub-05_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3b3a7ce7c541720afdfa56531a204f8454372850/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3b3a7ce7c541720afdfa56531a204f8454372850/SharpenEPI/sub-05_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3b3a7ce7c541720afdfa56531a204f8454372850/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3b3a7ce7c541720afdfa56531a204f8454372850/SharpenEPI/sub-05_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3b3a7ce7c541720afdfa56531a204f8454372850/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:14:37 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:14:37 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3b3a7ce7c541720afdfa56531a204f8454372850/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:14:37 | INFO | niworkflows | Generating visual report
2025-09-17 07:14:52 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 91.73878s.
2025-09-17 07:14:52 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3b3a7ce7c541720afdfa56531a204f8454372850/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:14:52 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:14:58 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.656096s.
2025-09-17 07:14:58 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3b3a7ce7c541720afdfa56531a204f8454372850/smoothness/mapflow/_smoothness0".
2025-09-17 07:14:58 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:14:58 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.25863s.
2025-09-17 07:15:00 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3b3a7ce7c541720afdfa56531a204f8454372850/outliers/mapflow/_outliers0".
2025-09-17 07:15:00 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:15:01 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.101707s.
2025-09-17 07:15:02 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3b3a7ce7c541720afdfa56531a204f8454372850/gcor/mapflow/_gcor0".
2025-09-17 07:15:02 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:15:04 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.68028s.
2025-09-17 07:15:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/dilated_mask".
2025-09-17 07:15:04 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:15:04 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.012418s.
2025-09-17 07:15:06 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:15:06 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:15:07 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.81415s.
2025-09-17 07:15:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/PlotBrainmask".
2025-09-17 07:15:08 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:15:09 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.132972s.
2025-09-17 07:15:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2864fbe546c0078aeee40198bc426c07125884e2/post_n4".
2025-09-17 07:15:10 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:15:11 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.734934s.
2025-09-17 07:15:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2864fbe546c0078aeee40198bc426c07125884e2/EPI2MNI".
2025-09-17 07:15:12 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:15:12 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:15:32 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2864fbe546c0078aeee40198bc426c07125884e2/EPI2MNI/stderr.nipype-init).
2025-09-17 07:15:32 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:15:32 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2864fbe546c0078aeee40198bc426c07125884e2/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2864fbe546c0078aeee40198bc426c07125884e2/SharpenEPI/sub-05_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2864fbe546c0078aeee40198bc426c07125884e2/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2864fbe546c0078aeee40198bc426c07125884e2/SharpenEPI/sub-05_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2864fbe546c0078aeee40198bc426c07125884e2/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2864fbe546c0078aeee40198bc426c07125884e2/SharpenEPI/sub-05_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2864fbe546c0078aeee40198bc426c07125884e2/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:16:31 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:16:31 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2864fbe546c0078aeee40198bc426c07125884e2/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:16:31 | INFO | niworkflows | Generating visual report
2025-09-17 07:16:45 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 93.377267s.
2025-09-17 07:16:46 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2864fbe546c0078aeee40198bc426c07125884e2/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:16:46 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:16:52 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.695347s.
2025-09-17 07:16:52 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2864fbe546c0078aeee40198bc426c07125884e2/smoothness/mapflow/_smoothness0".
2025-09-17 07:16:52 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:16:52 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.262845s.
2025-09-17 07:16:54 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2864fbe546c0078aeee40198bc426c07125884e2/outliers/mapflow/_outliers0".
2025-09-17 07:16:54 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:16:55 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.077477s.
2025-09-17 07:16:56 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2864fbe546c0078aeee40198bc426c07125884e2/gcor/mapflow/_gcor0".
2025-09-17 07:16:56 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:16:57 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.577308s.
2025-09-17 07:16:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/dilated_mask".
2025-09-17 07:16:58 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:16:58 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013011s.
2025-09-17 07:17:00 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:17:00 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:17:01 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.819072s.
2025-09-17 07:17:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/PlotBrainmask".
2025-09-17 07:17:02 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:17:03 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.1291120000000001s.
2025-09-17 07:17:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/post_n4".
2025-09-17 07:17:04 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:17:05 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.728612s.
2025-09-17 07:17:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caaf1085e46fbf2295cc489d73cab84dea13313f/EPI2MNI".
2025-09-17 07:17:06 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:17:06 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:17:29 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caaf1085e46fbf2295cc489d73cab84dea13313f/EPI2MNI/stderr.nipype-init).
2025-09-17 07:17:29 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:17:29 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caaf1085e46fbf2295cc489d73cab84dea13313f/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caaf1085e46fbf2295cc489d73cab84dea13313f/SharpenEPI/sub-05_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caaf1085e46fbf2295cc489d73cab84dea13313f/SharpenEPI/sub-05_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caaf1085e46fbf2295cc489d73cab84dea13313f/SharpenEPI/sub-05_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:18:26 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:18:26 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caaf1085e46fbf2295cc489d73cab84dea13313f/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:18:26 | INFO | niworkflows | Generating visual report
2025-09-17 07:18:41 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 94.75411s.
2025-09-17 07:18:42 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caaf1085e46fbf2295cc489d73cab84dea13313f/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:18:42 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:18:48 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.702032s.
2025-09-17 07:18:48 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caaf1085e46fbf2295cc489d73cab84dea13313f/smoothness/mapflow/_smoothness0".
2025-09-17 07:18:48 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:18:48 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.25763s.
2025-09-17 07:18:50 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caaf1085e46fbf2295cc489d73cab84dea13313f/outliers/mapflow/_outliers0".
2025-09-17 07:18:50 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:18:51 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.09593s.
2025-09-17 07:18:52 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caaf1085e46fbf2295cc489d73cab84dea13313f/gcor/mapflow/_gcor0".
2025-09-17 07:18:52 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.59284s.
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/dilated_mask".
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:18:54 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013775s.
2025-09-17 07:18:56 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:18:56 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:18:57 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.814705s.
2025-09-17 07:18:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/PlotBrainmask".
2025-09-17 07:18:58 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:18:59 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.138104s.
2025-09-17 07:19:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/3b3a7ce7c541720afdfa56531a204f8454372850/final_masked".
2025-09-17 07:19:00 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:00 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.020087s.
2025-09-17 07:19:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/3b3a7ce7c541720afdfa56531a204f8454372850/ResampleSegmentation".
2025-09-17 07:19:02 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:03 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.995724s.
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/ds_report_norm".
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004176s.
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3b3a7ce7c541720afdfa56531a204f8454372850/measures/mapflow/_measures0".
2025-09-17 07:19:04 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:05 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.586953s.
2025-09-17 07:19:06 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3b3a7ce7c541720afdfa56531a204f8454372850/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:06 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:06 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.019669s.
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/subtract_mask".
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.011936s.
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004093s.
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/ds_report_bmask".
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004002s.
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2864fbe546c0078aeee40198bc426c07125884e2/final_masked".
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.019825s.
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2864fbe546c0078aeee40198bc426c07125884e2/ResampleSegmentation".
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:13 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.950549s.
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/ds_report_norm".
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004034s.
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2864fbe546c0078aeee40198bc426c07125884e2/measures/mapflow/_measures0".
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:15 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.538499s.
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2864fbe546c0078aeee40198bc426c07125884e2/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.016108s.
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/subtract_mask".
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.01952s.
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.00403s.
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/ds_report_bmask".
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004084s.
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/final_masked".
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.019646s.
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/caaf1085e46fbf2295cc489d73cab84dea13313f/ResampleSegmentation".
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:23 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.953082s.
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/ds_report_norm".
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.00413s.
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caaf1085e46fbf2295cc489d73cab84dea13313f/measures/mapflow/_measures0".
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:25 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.566693s.
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caaf1085e46fbf2295cc489d73cab84dea13313f/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.015937s.
2025-09-17 07:19:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/subtract_mask".
2025-09-17 07:19:28 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:28 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.014814s.
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004107s.
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/ds_report_bmask".
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004038s.
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3b3a7ce7c541720afdfa56531a204f8454372850/datasink/mapflow/_datasink0".
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000422s.
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/3b3a7ce7c541720afdfa56531a204f8454372850/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.0036s.
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/parcels".
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.014751s.
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2864fbe546c0078aeee40198bc426c07125884e2/datasink/mapflow/_datasink0".
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000343s.
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2864fbe546c0078aeee40198bc426c07125884e2/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.00357s.
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/parcels".
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.014284s.
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caaf1085e46fbf2295cc489d73cab84dea13313f/datasink/mapflow/_datasink0".
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.00034s.
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/caaf1085e46fbf2295cc489d73cab84dea13313f/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.003474s.
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/parcels".
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.012886s.
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:19:40 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 3.920839s.
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 3.7421759999999997s.
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:19:50 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 3.960313s.
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/3b3a7ce7c541720afdfa56531a204f8454372850/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.003992s.
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2864fbe546c0078aeee40198bc426c07125884e2/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004037s.
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/caaf1085e46fbf2295cc489d73cab84dea13313f/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.007024s.
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:19:52 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 4.1292s.
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:02 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 4.180964s.
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:20:04 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:08 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 4.160792s.
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-09-17 07:20:10 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-09-17 07:20:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/Enhance".
2025-09-17 07:20:12 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:13 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.54097s.
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/format_tpm_names".
2025-09-17 07:20:14 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 0.881628s.
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/Grad".
2025-09-17 07:20:16 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:17 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 1.389631s.
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/apply_mask".
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:20:18 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.218172s.
2025-09-17 07:20:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/GradientThreshold".
2025-09-17 07:20:20 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:24 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 4.317868s.
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/segmentation".
2025-09-17 07:20:26 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-09-17 07:21:07 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 41.473935s.
2025-09-17 07:21:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/ArtifactMask".
2025-09-17 07:21:08 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-09-17 07:21:09 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 1.309504s.
2025-09-17 07:21:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/PlotHeadmask".
2025-09-17 07:21:10 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:12 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 1.895866s.
2025-09-17 07:21:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/harmonize".
2025-09-17 07:21:14 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-09-17 07:21:15 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.651486s.
2025-09-17 07:21:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/PlotSegmentation".
2025-09-17 07:21:16 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:18 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 2.174812s.
2025-09-17 07:21:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/provenance".
2025-09-17 07:21:20 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 07:21:20 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.039587s.
2025-09-17 07:21:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/ComputeQI2".
2025-09-17 07:21:20 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-09-17 07:21:30 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 10.331052s.
2025-09-17 07:21:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotAirmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/PlotAirmask".
2025-09-17 07:21:32 | INFO | nipype.workflow | [Node] Executing "PlotAirmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:34 | INFO | nipype.workflow | [Node] Finished "PlotAirmask", elapsed time 1.899276s.
2025-09-17 07:21:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotArtmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/PlotArtmask".
2025-09-17 07:21:36 | INFO | nipype.workflow | [Node] Executing "PlotArtmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:38 | INFO | nipype.workflow | [Node] Finished "PlotArtmask", elapsed time 1.956682s.
2025-09-17 07:21:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_headmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/ds_report_headmask".
2025-09-17 07:21:40 | INFO | nipype.workflow | [Node] Executing "ds_report_headmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:40 | INFO | nipype.workflow | [Node] Finished "ds_report_headmask", elapsed time 0.003738s.
2025-09-17 07:21:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/measures".
2025-09-17 07:21:40 | INFO | nipype.workflow | [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
2025-09-17 07:21:42 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=24.4121)
2025-09-17 07:21:42 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=24.4121)
2025-09-17 07:21:42 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=24.4121)
2025-09-17 07:21:44 | INFO | nipype.workflow | [Node] Finished "measures", elapsed time 4.372818s.
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_segm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/ds_report_segm".
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Executing "ds_report_segm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Finished "ds_report_segm", elapsed time 0.003782s.
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_noisefit" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/ds_report_noisefit".
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Executing "ds_report_noisefit" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Finished "ds_report_noisefit", elapsed time 0.003667s.
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_airmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/ds_report_airmask".
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Executing "ds_report_airmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Finished "ds_report_airmask", elapsed time 0.003649s.
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_artmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/ds_report_artmask".
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Executing "ds_report_artmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Finished "ds_report_artmask", elapsed time 0.003641s.
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject05.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_1859929..ds..sourcedata..raw..sub-05..anat..sub-05_T1w.nii.gz_metadata_FileSize0.0051597654819488525.FileSizeUnitsGB.NumberOfVolumes1/datasink".
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Finished "datasink", elapsed time 0.000367s.
2025-09-17 07:21:48 | INFO | nipype.workflow | Generating reports...
2025-09-17 07:21:49 | INFO | nipype.workflow | Report generation finished (4 reports).
2025-09-17 07:21:49 | IMPORTANT | mriqc | Participant level finished successfully averaging 00h 06min 27s per subject.
2025-09-17 07:21:49 | INFO | mriqc | Generating BIDS derivatives metadata.
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MRIQC completed (elapsed time 00h 25min 49s).
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