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ds000001-mriqc/logs/duct/sub-04_2025.09.17T08.56.31-564287stdout
Felix Hoffstaedter 6482bef130 [DATALAD RUNCMD] Compute MRIQC for sub-04 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-04 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "e0514950-e780-4f0e-b0d2-b16e0a2cf2ea",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-04",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-09-17 09:21:52 +02:00

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------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_557000/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-09-17 06:56:33 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-09-17 06:56:33 | IMPORTANT | mriqc | File size ('t1w'): 0.00|0.00 GB [maximum|average].
2025-09-17 06:56:33 | IMPORTANT | mriqc | Extracting metadata and entities for 3 input runs of modality 'bold'...
2025-09-17 06:56:33 | IMPORTANT | mriqc | File size ('bold'): 0.04|0.04 GB [maximum|average].
2025-09-17 06:56:33 | INFO | mriqc | MRIQC config file: /tmp/config-20250917-065632_127fcd84-1e66-47f5-9ff7-30becf6ebc77.toml.
2025-09-17 06:56:38 | INFO | matplotlib.font_manager | generated new fontManager
2025-09-17 06:56:39 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-09-17 06:56:39 | INFO | nipype.workflow | Building functional MRIQC workflow for 3 BOLD runs..
2025-09-17 06:56:40 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-09-17 06:56:44 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-09-17 06:56:48 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-09-17 06:56:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/conform".
2025-09-17 06:56:48 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-09-17 06:56:48 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.1337s.
2025-09-17 06:56:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/bf017435d2b89682901cd4b64aa9fa6cefa65599/pick_echo".
2025-09-17 06:56:50 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:50 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000141s.
2025-09-17 06:56:52 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/bf017435d2b89682901cd4b64aa9fa6cefa65599/provenance/mapflow/_provenance0".
2025-09-17 06:56:52 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:52 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.079775s.
2025-09-17 06:56:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/d51f3038362a15f8f4b08384ecef53c6de376d0e/pick_echo".
2025-09-17 06:56:52 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:52 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000118s.
2025-09-17 06:56:54 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d51f3038362a15f8f4b08384ecef53c6de376d0e/provenance/mapflow/_provenance0".
2025-09-17 06:56:54 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:54 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.079253s.
2025-09-17 06:56:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/0536d8503c65a0a003110ec43a372e078055d791/pick_echo".
2025-09-17 06:56:54 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:56:54 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000133s.
2025-09-17 06:56:56 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/0536d8503c65a0a003110ec43a372e078055d791/provenance/mapflow/_provenance0".
2025-09-17 06:56:56 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:56:56 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.078712s.
2025-09-17 06:56:56 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/pre_clip".
2025-09-17 06:56:56 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 06:56:59 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 2.93391s.
2025-09-17 06:57:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/RotationMask".
2025-09-17 06:57:00 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-09-17 06:57:01 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.29269s.
2025-09-17 06:57:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicNoise".
2025-09-17 06:57:02 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 06:57:06 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 3.3294639999999998s.
2025-09-17 06:57:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/bf017435d2b89682901cd4b64aa9fa6cefa65599/non_steady_state_detector".
2025-09-17 06:57:06 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:07 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.21483s.
2025-09-17 06:57:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/d51f3038362a15f8f4b08384ecef53c6de376d0e/non_steady_state_detector".
2025-09-17 06:57:08 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:09 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.21307s.
2025-09-17 06:57:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/0536d8503c65a0a003110ec43a372e078055d791/non_steady_state_detector".
2025-09-17 06:57:10 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:57:10 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.186788s.
2025-09-17 06:57:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/pre_n4".
2025-09-17 06:57:12 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 06:58:14 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 61.758329s.
2025-09-17 06:58:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/ds_report_background".
2025-09-17 06:58:16 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 06:58:16 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.008145s.
2025-09-17 06:58:16 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/bf017435d2b89682901cd4b64aa9fa6cefa65599/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:16 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:19 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.08011s.
2025-09-17 06:58:20 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/d51f3038362a15f8f4b08384ecef53c6de376d0e/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:20 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:22 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.063782s.
2025-09-17 06:58:24 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/0536d8503c65a0a003110ec43a372e078055d791/sanitize/mapflow/_sanitize0".
2025-09-17 06:58:24 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:58:26 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.081778s.
2025-09-17 06:58:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/synthstrip".
2025-09-17 06:58:28 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 06:59:04 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 36.01209s.
2025-09-17 06:59:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/bf017435d2b89682901cd4b64aa9fa6cefa65599/estimate_hm".
2025-09-17 06:59:06 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:02:02 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 175.34406s.
2025-09-17 07:02:02 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:02:02 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:02:04 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.190526s.
2025-09-17 07:02:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/d51f3038362a15f8f4b08384ecef53c6de376d0e/estimate_hm".
2025-09-17 07:02:04 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:04:56 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 171.294424s.
2025-09-17 07:04:56 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:04:56 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:04:58 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.250101s.
2025-09-17 07:04:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/0536d8503c65a0a003110ec43a372e078055d791/estimate_hm".
2025-09-17 07:04:59 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:07:52 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 173.813097s.
2025-09-17 07:07:53 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:07:53 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:07:54 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.185089s.
2025-09-17 07:07:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/post_n4".
2025-09-17 07:07:55 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:08:07 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 12.487212s.
2025-09-17 07:08:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/smoothness".
2025-09-17 07:08:09 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:08:11 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 2.040876s.
2025-09-17 07:08:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicZoomed".
2025-09-17 07:08:13 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:16 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.217178s.
2025-09-17 07:08:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/PlotBrainmask".
2025-09-17 07:08:17 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:08:19 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.940588s.
2025-09-17 07:08:21 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/bf017435d2b89682901cd4b64aa9fa6cefa65599/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:08:21 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:35 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 14.197219s.
2025-09-17 07:08:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/bf017435d2b89682901cd4b64aa9fa6cefa65599/ComputeFD".
2025-09-17 07:08:37 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:08:37 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.006329s.
2025-09-17 07:08:39 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:08:39 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:08:39 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.630427s.
2025-09-17 07:08:41 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/d51f3038362a15f8f4b08384ecef53c6de376d0e/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:08:41 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:55 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.952961s.
2025-09-17 07:08:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/d51f3038362a15f8f4b08384ecef53c6de376d0e/ComputeFD".
2025-09-17 07:08:57 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:08:57 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.006317s.
2025-09-17 07:08:59 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:08:59 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:08:59 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.590021s.
2025-09-17 07:09:01 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/0536d8503c65a0a003110ec43a372e078055d791/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:09:01 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:09:15 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.927627s.
2025-09-17 07:09:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/0536d8503c65a0a003110ec43a372e078055d791/ComputeFD".
2025-09-17 07:09:17 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:09:17 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.003053s.
2025-09-17 07:09:19 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:19 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:19 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.60583s.
2025-09-17 07:09:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/final_masked".
2025-09-17 07:09:21 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:09:21 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.135131s.
2025-09-17 07:09:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization".
2025-09-17 07:09:23 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:09:23 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:10:09 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-09-17 07:10:09 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:10:20 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:10:21 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-09-17 07:10:21 | INFO | niworkflows | Generating visual report
2025-09-17 07:10:34 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 70.894936s.
2025-09-17 07:10:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/ds_report_zoomed".
2025-09-17 07:10:35 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:35 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004552s.
2025-09-17 07:10:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/ds_report_bmask".
2025-09-17 07:10:35 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:35 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.00419s.
2025-09-17 07:10:35 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/bf017435d2b89682901cd4b64aa9fa6cefa65599/mean/mapflow/_mean0".
2025-09-17 07:10:35 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:36 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.948539s.
2025-09-17 07:10:37 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/bf017435d2b89682901cd4b64aa9fa6cefa65599/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:10:37 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:10:37 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.663859s.
2025-09-17 07:10:39 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/bf017435d2b89682901cd4b64aa9fa6cefa65599/quality/mapflow/_quality0".
2025-09-17 07:10:39 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:10:41 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.261525s.
2025-09-17 07:10:43 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/d51f3038362a15f8f4b08384ecef53c6de376d0e/mean/mapflow/_mean0".
2025-09-17 07:10:43 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:44 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.900356s.
2025-09-17 07:10:45 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/d51f3038362a15f8f4b08384ecef53c6de376d0e/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:10:45 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:10:45 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.637227s.
2025-09-17 07:10:47 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d51f3038362a15f8f4b08384ecef53c6de376d0e/quality/mapflow/_quality0".
2025-09-17 07:10:47 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:10:49 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.226182s.
2025-09-17 07:10:51 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/0536d8503c65a0a003110ec43a372e078055d791/mean/mapflow/_mean0".
2025-09-17 07:10:51 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:10:52 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.88929s.
2025-09-17 07:10:53 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/0536d8503c65a0a003110ec43a372e078055d791/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:10:53 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:10:53 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.62951s.
2025-09-17 07:10:55 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/0536d8503c65a0a003110ec43a372e078055d791/quality/mapflow/_quality0".
2025-09-17 07:10:55 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:10:57 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.2549770000000002s.
2025-09-17 07:10:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/ds_report_norm".
2025-09-17 07:10:59 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:10:59 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004444s.
2025-09-17 07:10:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/pre_clip".
2025-09-17 07:10:59 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:10:59 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.276705s.
2025-09-17 07:11:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/bf017435d2b89682901cd4b64aa9fa6cefa65599/SharpenEPI".
2025-09-17 07:11:01 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:02 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.7184110000000001s.
2025-09-17 07:11:03 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:03 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:04 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.922897s.
2025-09-17 07:11:05 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:05 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:06 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.985s.
2025-09-17 07:11:07 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:07 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:08 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.989351s.
2025-09-17 07:11:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/pre_clip".
2025-09-17 07:11:09 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:09 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.248781s.
2025-09-17 07:11:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d51f3038362a15f8f4b08384ecef53c6de376d0e/SharpenEPI".
2025-09-17 07:11:11 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:12 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.7791160000000001s.
2025-09-17 07:11:13 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:13 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:14 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.919334s.
2025-09-17 07:11:15 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:15 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:16 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.986155s.
2025-09-17 07:11:17 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:17 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:18 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.993451s.
2025-09-17 07:11:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/0536d8503c65a0a003110ec43a372e078055d791/pre_clip".
2025-09-17 07:11:19 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:11:19 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.281761s.
2025-09-17 07:11:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/0536d8503c65a0a003110ec43a372e078055d791/SharpenEPI".
2025-09-17 07:11:21 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:22 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.778892s.
2025-09-17 07:11:23 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:11:23 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:24 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.928603s.
2025-09-17 07:11:25 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:11:25 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:26 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.98039s.
2025-09-17 07:11:27 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:11:27 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:11:28 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.98688s.
2025-09-17 07:11:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/pre_n4".
2025-09-17 07:11:29 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:30 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.795207s.
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004979s.
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004886s.
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004788s.
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/pre_n4".
2025-09-17 07:11:31 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:33 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.697379s.
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004773s.
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004813s.
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.00464s.
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/0536d8503c65a0a003110ec43a372e078055d791/pre_n4".
2025-09-17 07:11:35 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:37 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.6835740000000001s.
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004785s.
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004929s.
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004765s.
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/synthstrip".
2025-09-17 07:11:39 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:10 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 31.110549s.
2025-09-17 07:12:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/synthstrip".
2025-09-17 07:12:11 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:12:42 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 31.19771s.
2025-09-17 07:12:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/0536d8503c65a0a003110ec43a372e078055d791/synthstrip".
2025-09-17 07:12:43 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:13:14 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 30.914495s.
2025-09-17 07:13:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/post_n4".
2025-09-17 07:13:15 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:13:16 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.776169s.
2025-09-17 07:13:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/bf017435d2b89682901cd4b64aa9fa6cefa65599/EPI2MNI".
2025-09-17 07:13:17 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:13:17 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:13:42 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:13:42 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/bf017435d2b89682901cd4b64aa9fa6cefa65599/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/bf017435d2b89682901cd4b64aa9fa6cefa65599/SharpenEPI/sub-04_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/bf017435d2b89682901cd4b64aa9fa6cefa65599/SharpenEPI/sub-04_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/bf017435d2b89682901cd4b64aa9fa6cefa65599/SharpenEPI/sub-04_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:14:48 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:14:48 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/bf017435d2b89682901cd4b64aa9fa6cefa65599/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:14:48 | INFO | niworkflows | Generating visual report
2025-09-17 07:15:01 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 104.61279s.
2025-09-17 07:15:03 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/bf017435d2b89682901cd4b64aa9fa6cefa65599/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:15:03 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:15:08 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.053599s.
2025-09-17 07:15:09 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/bf017435d2b89682901cd4b64aa9fa6cefa65599/smoothness/mapflow/_smoothness0".
2025-09-17 07:15:09 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:15:09 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.245633s.
2025-09-17 07:15:11 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/bf017435d2b89682901cd4b64aa9fa6cefa65599/outliers/mapflow/_outliers0".
2025-09-17 07:15:11 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:15:12 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.1315520000000001s.
2025-09-17 07:15:13 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/bf017435d2b89682901cd4b64aa9fa6cefa65599/gcor/mapflow/_gcor0".
2025-09-17 07:15:13 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:15:15 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 2.000792s.
2025-09-17 07:15:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/dilated_mask".
2025-09-17 07:15:17 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:15:17 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.010793s.
2025-09-17 07:15:19 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:15:19 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:15:20 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.922468s.
2025-09-17 07:15:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/PlotBrainmask".
2025-09-17 07:15:21 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:15:22 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 0.969681s.
2025-09-17 07:15:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/post_n4".
2025-09-17 07:15:23 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:15:24 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.774739s.
2025-09-17 07:15:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d51f3038362a15f8f4b08384ecef53c6de376d0e/EPI2MNI".
2025-09-17 07:15:25 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:15:25 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:15:49 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d51f3038362a15f8f4b08384ecef53c6de376d0e/EPI2MNI/stderr.nipype-init).
2025-09-17 07:15:49 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:15:49 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d51f3038362a15f8f4b08384ecef53c6de376d0e/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d51f3038362a15f8f4b08384ecef53c6de376d0e/SharpenEPI/sub-04_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d51f3038362a15f8f4b08384ecef53c6de376d0e/SharpenEPI/sub-04_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d51f3038362a15f8f4b08384ecef53c6de376d0e/SharpenEPI/sub-04_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:16:54 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:16:54 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d51f3038362a15f8f4b08384ecef53c6de376d0e/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:16:54 | INFO | niworkflows | Generating visual report
2025-09-17 07:17:07 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 102.567032s.
2025-09-17 07:17:09 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d51f3038362a15f8f4b08384ecef53c6de376d0e/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:17:09 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:17:14 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.139013s.
2025-09-17 07:17:15 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d51f3038362a15f8f4b08384ecef53c6de376d0e/smoothness/mapflow/_smoothness0".
2025-09-17 07:17:15 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:17:15 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.266322s.
2025-09-17 07:17:17 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d51f3038362a15f8f4b08384ecef53c6de376d0e/outliers/mapflow/_outliers0".
2025-09-17 07:17:17 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:17:18 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.125812s.
2025-09-17 07:17:19 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d51f3038362a15f8f4b08384ecef53c6de376d0e/gcor/mapflow/_gcor0".
2025-09-17 07:17:19 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:17:21 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.897794s.
2025-09-17 07:17:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/dilated_mask".
2025-09-17 07:17:23 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:17:23 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.012838s.
2025-09-17 07:17:25 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:17:25 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:17:26 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.973s.
2025-09-17 07:17:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/PlotBrainmask".
2025-09-17 07:17:27 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:17:28 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.165842s.
2025-09-17 07:17:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/0536d8503c65a0a003110ec43a372e078055d791/post_n4".
2025-09-17 07:17:29 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:17:30 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.803561s.
2025-09-17 07:17:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/0536d8503c65a0a003110ec43a372e078055d791/EPI2MNI".
2025-09-17 07:17:31 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:17:31 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:17:54 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/0536d8503c65a0a003110ec43a372e078055d791/EPI2MNI/stderr.nipype-init).
2025-09-17 07:17:54 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:17:54 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/0536d8503c65a0a003110ec43a372e078055d791/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/0536d8503c65a0a003110ec43a372e078055d791/SharpenEPI/sub-04_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/0536d8503c65a0a003110ec43a372e078055d791/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/0536d8503c65a0a003110ec43a372e078055d791/SharpenEPI/sub-04_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/0536d8503c65a0a003110ec43a372e078055d791/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/0536d8503c65a0a003110ec43a372e078055d791/SharpenEPI/sub-04_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/0536d8503c65a0a003110ec43a372e078055d791/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:18:59 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:18:59 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/0536d8503c65a0a003110ec43a372e078055d791/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:18:59 | INFO | niworkflows | Generating visual report
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 101.127099s.
2025-09-17 07:19:13 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/0536d8503c65a0a003110ec43a372e078055d791/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:19:13 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 5.087181s.
2025-09-17 07:19:19 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/0536d8503c65a0a003110ec43a372e078055d791/smoothness/mapflow/_smoothness0".
2025-09-17 07:19:19 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:19:19 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.233969s.
2025-09-17 07:19:21 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/0536d8503c65a0a003110ec43a372e078055d791/outliers/mapflow/_outliers0".
2025-09-17 07:19:21 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.107374s.
2025-09-17 07:19:23 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/0536d8503c65a0a003110ec43a372e078055d791/gcor/mapflow/_gcor0".
2025-09-17 07:19:23 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:19:25 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.889163s.
2025-09-17 07:19:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/dilated_mask".
2025-09-17 07:19:27 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:19:27 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.014133s.
2025-09-17 07:19:29 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:19:29 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:19:30 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.958979s.
2025-09-17 07:19:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/PlotBrainmask".
2025-09-17 07:19:31 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.042846s.
2025-09-17 07:19:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/final_masked".
2025-09-17 07:19:33 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:33 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.020172s.
2025-09-17 07:19:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/bf017435d2b89682901cd4b64aa9fa6cefa65599/ResampleSegmentation".
2025-09-17 07:19:35 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.054637s.
2025-09-17 07:19:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/ds_report_norm".
2025-09-17 07:19:37 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:37 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004946s.
2025-09-17 07:19:37 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/bf017435d2b89682901cd4b64aa9fa6cefa65599/measures/mapflow/_measures0".
2025-09-17 07:19:37 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.60059s.
2025-09-17 07:19:39 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/bf017435d2b89682901cd4b64aa9fa6cefa65599/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:39 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:39 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.018598s.
2025-09-17 07:19:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/subtract_mask".
2025-09-17 07:19:41 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:41 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.012671s.
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004835s.
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/ds_report_bmask".
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.00469s.
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/final_masked".
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:43 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.020073s.
2025-09-17 07:19:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/d51f3038362a15f8f4b08384ecef53c6de376d0e/ResampleSegmentation".
2025-09-17 07:19:45 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:46 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.023516s.
2025-09-17 07:19:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/ds_report_norm".
2025-09-17 07:19:47 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:47 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.0048s.
2025-09-17 07:19:47 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d51f3038362a15f8f4b08384ecef53c6de376d0e/measures/mapflow/_measures0".
2025-09-17 07:19:47 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:48 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.540059s.
2025-09-17 07:19:49 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d51f3038362a15f8f4b08384ecef53c6de376d0e/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:49 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:49 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.01789s.
2025-09-17 07:19:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/subtract_mask".
2025-09-17 07:19:51 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:19:51 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.015063s.
2025-09-17 07:19:53 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:19:53 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:53 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004735s.
2025-09-17 07:19:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/ds_report_bmask".
2025-09-17 07:19:53 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:53 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.01231s.
2025-09-17 07:19:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/0536d8503c65a0a003110ec43a372e078055d791/final_masked".
2025-09-17 07:19:53 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:19:53 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.020051s.
2025-09-17 07:19:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/0536d8503c65a0a003110ec43a372e078055d791/ResampleSegmentation".
2025-09-17 07:19:55 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:19:56 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.987545s.
2025-09-17 07:19:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/ds_report_norm".
2025-09-17 07:19:57 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:57 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004938s.
2025-09-17 07:19:57 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/0536d8503c65a0a003110ec43a372e078055d791/measures/mapflow/_measures0".
2025-09-17 07:19:57 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:19:58 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.571526s.
2025-09-17 07:19:59 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/0536d8503c65a0a003110ec43a372e078055d791/timeseries/mapflow/_timeseries0".
2025-09-17 07:19:59 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:19:59 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.011155s.
2025-09-17 07:20:01 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/subtract_mask".
2025-09-17 07:20:01 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:20:01 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.013544s.
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004682s.
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/ds_report_bmask".
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004764s.
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/bf017435d2b89682901cd4b64aa9fa6cefa65599/datasink/mapflow/_datasink0".
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000588s.
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/bf017435d2b89682901cd4b64aa9fa6cefa65599/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004292s.
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/parcels".
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:03 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.015253s.
2025-09-17 07:20:05 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d51f3038362a15f8f4b08384ecef53c6de376d0e/datasink/mapflow/_datasink0".
2025-09-17 07:20:05 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:20:05 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000427s.
2025-09-17 07:20:05 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/d51f3038362a15f8f4b08384ecef53c6de376d0e/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:20:05 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:05 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004207s.
2025-09-17 07:20:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/parcels".
2025-09-17 07:20:05 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:05 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.016347s.
2025-09-17 07:20:07 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/0536d8503c65a0a003110ec43a372e078055d791/datasink/mapflow/_datasink0".
2025-09-17 07:20:07 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:20:07 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000423s.
2025-09-17 07:20:07 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/0536d8503c65a0a003110ec43a372e078055d791/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:20:07 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:07 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004178s.
2025-09-17 07:20:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/parcels".
2025-09-17 07:20:07 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:07 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.01377s.
2025-09-17 07:20:09 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:09 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:11 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.778707s.
2025-09-17 07:20:11 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:11 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:13 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.700785s.
2025-09-17 07:20:13 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:20:13 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.828533s.
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/bf017435d2b89682901cd4b64aa9fa6cefa65599/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004769s.
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/d51f3038362a15f8f4b08384ecef53c6de376d0e/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004649s.
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/0536d8503c65a0a003110ec43a372e078055d791/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.005274s.
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:20:15 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:19 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 3.953106s.
2025-09-17 07:20:21 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:20:21 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:25 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 3.92062s.
2025-09-17 07:20:27 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:20:27 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:20:31 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 3.971264s.
2025-09-17 07:20:33 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:20:33 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-09-17 07:20:33 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-09-17 07:20:33 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:20:33 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-09-17 07:20:33 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-09-17 07:20:33 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:20:33 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-09-17 07:20:33 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-09-17 07:20:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/Enhance".
2025-09-17 07:20:35 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:35 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.229493s.
2025-09-17 07:20:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/format_tpm_names".
2025-09-17 07:20:37 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:38 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 0.806883s.
2025-09-17 07:20:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/Grad".
2025-09-17 07:20:39 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:40 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 0.951477s.
2025-09-17 07:20:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/apply_mask".
2025-09-17 07:20:41 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:20:41 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.130913s.
2025-09-17 07:20:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/GradientThreshold".
2025-09-17 07:20:43 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:20:47 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 4.490208s.
2025-09-17 07:20:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/segmentation".
2025-09-17 07:20:49 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-09-17 07:21:28 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 38.885095s.
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/ArtifactMask".
2025-09-17 07:21:29 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-09-17 07:21:30 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 0.970001s.
2025-09-17 07:21:31 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/PlotHeadmask".
2025-09-17 07:21:31 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:32 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 1.558722s.
2025-09-17 07:21:33 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/harmonize".
2025-09-17 07:21:33 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-09-17 07:21:33 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.311445s.
2025-09-17 07:21:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/PlotSegmentation".
2025-09-17 07:21:35 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:37 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 1.790466s.
2025-09-17 07:21:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/provenance".
2025-09-17 07:21:37 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 07:21:37 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.038022s.
2025-09-17 07:21:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/ComputeQI2".
2025-09-17 07:21:37 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-09-17 07:21:37 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 0.08766s.
2025-09-17 07:21:39 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotAirmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/PlotAirmask".
2025-09-17 07:21:39 | INFO | nipype.workflow | [Node] Executing "PlotAirmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:40 | INFO | nipype.workflow | [Node] Finished "PlotAirmask", elapsed time 1.533706s.
2025-09-17 07:21:41 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotArtmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/PlotArtmask".
2025-09-17 07:21:41 | INFO | nipype.workflow | [Node] Executing "PlotArtmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:42 | INFO | nipype.workflow | [Node] Finished "PlotArtmask", elapsed time 1.598086s.
2025-09-17 07:21:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_headmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/ds_report_headmask".
2025-09-17 07:21:43 | INFO | nipype.workflow | [Node] Executing "ds_report_headmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:43 | INFO | nipype.workflow | [Node] Finished "ds_report_headmask", elapsed time 0.004282s.
2025-09-17 07:21:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/measures".
2025-09-17 07:21:43 | INFO | nipype.workflow | [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
2025-09-17 07:21:45 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=0.0)
2025-09-17 07:21:45 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=0.0)
2025-09-17 07:21:45 | WARNING | nipype.interface | Estimated signal variation in the background was too small (MAD=0.0, sigma=0.0)
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Finished "measures", elapsed time 3.474204s.
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_segm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/ds_report_segm".
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Executing "ds_report_segm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Finished "ds_report_segm", elapsed time 0.006656s.
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_noisefit" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/ds_report_noisefit".
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Executing "ds_report_noisefit" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Finished "ds_report_noisefit", elapsed time 0.004222s.
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_airmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/ds_report_airmask".
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Executing "ds_report_airmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Finished "ds_report_airmask", elapsed time 0.004495s.
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_artmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/ds_report_artmask".
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Executing "ds_report_artmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Finished "ds_report_artmask", elapsed time 0.00418s.
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject04.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_557000..ds..sourcedata..raw..sub-04..anat..sub-04_T1w.nii.gz_metadata_FileSize0.0010803192853927612.FileSizeUnitsGB.NumberOfVolumes1/datasink".
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Finished "datasink", elapsed time 0.000483s.
2025-09-17 07:21:49 | INFO | nipype.workflow | Generating reports...
2025-09-17 07:21:50 | INFO | nipype.workflow | Report generation finished (4 reports).
2025-09-17 07:21:50 | IMPORTANT | mriqc | Participant level finished successfully averaging 00h 06min 19s per subject.
2025-09-17 07:21:50 | INFO | mriqc | Generating BIDS derivatives metadata.
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MRIQC completed (elapsed time 00h 25min 18s).
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