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ds000001-mriqc/logs/duct/sub-03_2025.09.17T08.55.09-3840168stdout
Felix Hoffstaedter b5b3eb6974 [DATALAD RUNCMD] Compute MRIQC for sub-03 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-03 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "e0514950-e780-4f0e-b0d2-b16e0a2cf2ea",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-03",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-09-17 09:19:47 +02:00

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------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_3834726/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-09-17 06:55:11 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-09-17 06:55:11 | IMPORTANT | mriqc | File size ('t1w'): 0.00|0.00 GB [maximum|average].
2025-09-17 06:55:11 | IMPORTANT | mriqc | Extracting metadata and entities for 3 input runs of modality 'bold'...
2025-09-17 06:55:11 | IMPORTANT | mriqc | File size ('bold'): 0.04|0.04 GB [maximum|average].
2025-09-17 06:55:11 | INFO | mriqc | MRIQC config file: /tmp/config-20250917-065510_249cca48-743b-4bd7-ad8c-60c0530ffe57.toml.
2025-09-17 06:55:15 | INFO | matplotlib.font_manager | generated new fontManager
2025-09-17 06:55:16 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-09-17 06:55:17 | INFO | nipype.workflow | Building functional MRIQC workflow for 3 BOLD runs..
2025-09-17 06:55:17 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-09-17 06:55:21 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-09-17 06:55:25 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-09-17 06:55:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/conform".
2025-09-17 06:55:25 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-09-17 06:55:26 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.239006s.
2025-09-17 06:55:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/2681c774ee78a62d780373e351d8f28cdf9a768e/pick_echo".
2025-09-17 06:55:27 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:55:27 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000143s.
2025-09-17 06:55:29 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2681c774ee78a62d780373e351d8f28cdf9a768e/provenance/mapflow/_provenance0".
2025-09-17 06:55:29 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:55:29 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.073928s.
2025-09-17 06:55:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/pick_echo".
2025-09-17 06:55:30 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:55:30 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000112s.
2025-09-17 06:55:31 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/provenance/mapflow/_provenance0".
2025-09-17 06:55:31 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:55:31 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.07344s.
2025-09-17 06:55:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/pick_echo".
2025-09-17 06:55:32 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:55:32 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.00012s.
2025-09-17 06:55:33 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/provenance/mapflow/_provenance0".
2025-09-17 06:55:33 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:55:33 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.072095s.
2025-09-17 06:55:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/pre_clip".
2025-09-17 06:55:34 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 06:55:43 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 9.14512s.
2025-09-17 06:55:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/RotationMask".
2025-09-17 06:55:43 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-09-17 06:55:44 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.399509s.
2025-09-17 06:55:45 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicNoise".
2025-09-17 06:55:45 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 06:55:50 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.463326s.
2025-09-17 06:55:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/2681c774ee78a62d780373e351d8f28cdf9a768e/non_steady_state_detector".
2025-09-17 06:55:51 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:55:52 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.179712s.
2025-09-17 06:55:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/non_steady_state_detector".
2025-09-17 06:55:53 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:55:54 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.178096s.
2025-09-17 06:55:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/non_steady_state_detector".
2025-09-17 06:55:55 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:55:56 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.177265s.
2025-09-17 06:55:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/pre_n4".
2025-09-17 06:55:57 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 06:56:58 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 60.162106s.
2025-09-17 06:56:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/ds_report_background".
2025-09-17 06:56:59 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 06:56:59 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.007995s.
2025-09-17 06:57:00 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/2681c774ee78a62d780373e351d8f28cdf9a768e/sanitize/mapflow/_sanitize0".
2025-09-17 06:57:00 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:57:00 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.03794s.
2025-09-17 06:57:01 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/sanitize/mapflow/_sanitize0".
2025-09-17 06:57:01 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:57:01 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.037163s.
2025-09-17 06:57:03 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/sanitize/mapflow/_sanitize0".
2025-09-17 06:57:03 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:57:05 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 1.978538s.
2025-09-17 06:57:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/synthstrip".
2025-09-17 06:57:07 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 06:57:43 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 35.201941s.
2025-09-17 06:57:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/2681c774ee78a62d780373e351d8f28cdf9a768e/estimate_hm".
2025-09-17 06:57:43 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:00:34 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 170.189094s.
2025-09-17 07:00:35 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:00:35 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:00:37 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.1542379999999999s.
2025-09-17 07:00:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/estimate_hm".
2025-09-17 07:00:37 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:03:27 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 169.074486s.
2025-09-17 07:03:28 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:03:28 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:03:29 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.111607s.
2025-09-17 07:03:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/estimate_hm".
2025-09-17 07:03:30 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:06:14 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 164.474706s.
2025-09-17 07:06:16 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:06:16 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:06:17 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.047425s.
2025-09-17 07:06:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/post_n4".
2025-09-17 07:06:18 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:06:30 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 12.738308s.
2025-09-17 07:06:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/smoothness".
2025-09-17 07:06:32 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:06:34 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 1.945851s.
2025-09-17 07:06:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicZoomed".
2025-09-17 07:06:36 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:06:39 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.181164s.
2025-09-17 07:06:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/PlotBrainmask".
2025-09-17 07:06:40 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:06:42 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 2.091388s.
2025-09-17 07:06:44 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/2681c774ee78a62d780373e351d8f28cdf9a768e/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:06:44 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:06:57 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.649795s.
2025-09-17 07:06:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/2681c774ee78a62d780373e351d8f28cdf9a768e/ComputeFD".
2025-09-17 07:06:58 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:06:58 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.005627s.
2025-09-17 07:07:00 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:07:00 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:07:00 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.606741s.
2025-09-17 07:07:02 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:07:02 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:07:15 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.608747s.
2025-09-17 07:07:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/ComputeFD".
2025-09-17 07:07:16 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:07:16 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.005867s.
2025-09-17 07:07:18 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:07:18 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:07:18 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.633666s.
2025-09-17 07:07:20 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:07:20 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:07:33 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 13.311662s.
2025-09-17 07:07:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/ComputeFD".
2025-09-17 07:07:34 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:07:34 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.006121s.
2025-09-17 07:07:36 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:07:36 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:07:36 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.561198s.
2025-09-17 07:07:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/final_masked".
2025-09-17 07:07:38 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:07:38 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.214052s.
2025-09-17 07:07:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization".
2025-09-17 07:07:40 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:07:40 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:08:20 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/stderr.nipype-init).
2025-09-17 07:08:20 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-09-17 07:08:20 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:08:30 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:08:31 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-09-17 07:08:31 | INFO | niworkflows | Generating visual report
2025-09-17 07:08:43 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 63.531263s.
2025-09-17 07:08:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/ds_report_zoomed".
2025-09-17 07:08:44 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:08:44 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004377s.
2025-09-17 07:08:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/ds_report_bmask".
2025-09-17 07:08:44 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:08:44 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004168s.
2025-09-17 07:08:44 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/2681c774ee78a62d780373e351d8f28cdf9a768e/mean/mapflow/_mean0".
2025-09-17 07:08:44 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:08:45 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.859324s.
2025-09-17 07:08:46 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/2681c774ee78a62d780373e351d8f28cdf9a768e/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:08:46 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:08:46 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.625072s.
2025-09-17 07:08:48 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2681c774ee78a62d780373e351d8f28cdf9a768e/quality/mapflow/_quality0".
2025-09-17 07:08:48 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:08:50 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.027962s.
2025-09-17 07:08:52 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/mean/mapflow/_mean0".
2025-09-17 07:08:52 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:08:53 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.852933s.
2025-09-17 07:08:54 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:08:54 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:08:54 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.623327s.
2025-09-17 07:08:56 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/quality/mapflow/_quality0".
2025-09-17 07:08:56 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:08:58 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.022868s.
2025-09-17 07:09:00 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/mean/mapflow/_mean0".
2025-09-17 07:09:00 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:09:01 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.856651s.
2025-09-17 07:09:02 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:09:02 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:09:02 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.594228s.
2025-09-17 07:09:04 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/quality/mapflow/_quality0".
2025-09-17 07:09:04 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:09:06 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.01672s.
2025-09-17 07:09:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/ds_report_norm".
2025-09-17 07:09:08 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:08 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004035s.
2025-09-17 07:09:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/pre_clip".
2025-09-17 07:09:08 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:09:08 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.233741s.
2025-09-17 07:09:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2681c774ee78a62d780373e351d8f28cdf9a768e/SharpenEPI".
2025-09-17 07:09:10 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:09:11 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.62711s.
2025-09-17 07:09:12 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:09:12 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:09:13 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.855077s.
2025-09-17 07:09:14 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:09:14 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:09:15 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.90052s.
2025-09-17 07:09:16 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:09:16 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:09:17 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.912824s.
2025-09-17 07:09:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/pre_clip".
2025-09-17 07:09:18 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:09:18 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.236082s.
2025-09-17 07:09:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/SharpenEPI".
2025-09-17 07:09:20 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:09:21 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.670096s.
2025-09-17 07:09:22 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:09:22 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:09:23 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.851979s.
2025-09-17 07:09:24 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:09:24 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:09:25 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.903577s.
2025-09-17 07:09:26 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:09:26 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:09:27 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.90407s.
2025-09-17 07:09:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/pre_clip".
2025-09-17 07:09:28 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:09:28 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.240588s.
2025-09-17 07:09:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/SharpenEPI".
2025-09-17 07:09:30 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:09:31 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.664042s.
2025-09-17 07:09:32 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:09:32 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:09:33 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.838947s.
2025-09-17 07:09:34 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:09:34 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:09:35 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.874299s.
2025-09-17 07:09:36 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:09:36 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:09:37 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 0.896143s.
2025-09-17 07:09:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/pre_n4".
2025-09-17 07:09:38 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:09:39 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.663943s.
2025-09-17 07:09:40 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:09:40 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:40 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004624s.
2025-09-17 07:09:40 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:09:40 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:40 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004377s.
2025-09-17 07:09:40 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:09:40 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:40 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004503s.
2025-09-17 07:09:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/pre_n4".
2025-09-17 07:09:40 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:09:42 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.598975s.
2025-09-17 07:09:42 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:09:42 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:42 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004512s.
2025-09-17 07:09:42 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:09:42 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:42 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004435s.
2025-09-17 07:09:42 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:09:42 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:42 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004492s.
2025-09-17 07:09:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/pre_n4".
2025-09-17 07:09:42 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:09:44 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.588918s.
2025-09-17 07:09:44 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:09:44 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:44 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004598s.
2025-09-17 07:09:44 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:09:44 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:44 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004422s.
2025-09-17 07:09:44 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:09:44 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:09:44 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004384s.
2025-09-17 07:09:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/synthstrip".
2025-09-17 07:09:44 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:10:14 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 29.555294s.
2025-09-17 07:10:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/synthstrip".
2025-09-17 07:10:14 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:10:43 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 29.574081s.
2025-09-17 07:10:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/synthstrip".
2025-09-17 07:10:44 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:11:13 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 29.50079s.
2025-09-17 07:11:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/post_n4".
2025-09-17 07:11:14 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:11:14 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.671255s.
2025-09-17 07:11:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2681c774ee78a62d780373e351d8f28cdf9a768e/EPI2MNI".
2025-09-17 07:11:16 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:11:16 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:11:42 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2681c774ee78a62d780373e351d8f28cdf9a768e/EPI2MNI/stderr.nipype-init).
2025-09-17 07:11:42 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:11:42 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2681c774ee78a62d780373e351d8f28cdf9a768e/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2681c774ee78a62d780373e351d8f28cdf9a768e/SharpenEPI/sub-03_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2681c774ee78a62d780373e351d8f28cdf9a768e/SharpenEPI/sub-03_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2681c774ee78a62d780373e351d8f28cdf9a768e/SharpenEPI/sub-03_task-balloonanalogrisktask_run-01_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:12:43 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:12:43 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2681c774ee78a62d780373e351d8f28cdf9a768e/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:12:43 | INFO | niworkflows | Generating visual report
2025-09-17 07:12:55 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 99.283594s.
2025-09-17 07:12:56 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2681c774ee78a62d780373e351d8f28cdf9a768e/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:12:56 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:13:00 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 4.3202s.
2025-09-17 07:13:02 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2681c774ee78a62d780373e351d8f28cdf9a768e/smoothness/mapflow/_smoothness0".
2025-09-17 07:13:02 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:13:02 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.204596s.
2025-09-17 07:13:04 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2681c774ee78a62d780373e351d8f28cdf9a768e/outliers/mapflow/_outliers0".
2025-09-17 07:13:04 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:13:05 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.005952s.
2025-09-17 07:13:06 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2681c774ee78a62d780373e351d8f28cdf9a768e/gcor/mapflow/_gcor0".
2025-09-17 07:13:06 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:13:08 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.945641s.
2025-09-17 07:13:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/dilated_mask".
2025-09-17 07:13:10 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:13:10 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.012654s.
2025-09-17 07:13:12 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:13:12 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:13:13 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.855109s.
2025-09-17 07:13:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/PlotBrainmask".
2025-09-17 07:13:14 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:13:15 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 0.909282s.
2025-09-17 07:13:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/post_n4".
2025-09-17 07:13:16 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:13:17 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.713101s.
2025-09-17 07:13:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/EPI2MNI".
2025-09-17 07:13:18 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:13:18 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:13:44 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/EPI2MNI/stderr.nipype-init).
2025-09-17 07:13:44 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:13:44 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/SharpenEPI/sub-03_task-balloonanalogrisktask_run-02_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/SharpenEPI/sub-03_task-balloonanalogrisktask_run-02_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/SharpenEPI/sub-03_task-balloonanalogrisktask_run-02_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:14:46 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:14:46 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:14:46 | INFO | niworkflows | Generating visual report
2025-09-17 07:14:58 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 100.204851s.
2025-09-17 07:15:00 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:15:00 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:15:04 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 4.344786s.
2025-09-17 07:15:06 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/smoothness/mapflow/_smoothness0".
2025-09-17 07:15:06 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:15:06 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.248659s.
2025-09-17 07:15:08 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/outliers/mapflow/_outliers0".
2025-09-17 07:15:08 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:15:09 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 0.99702s.
2025-09-17 07:15:10 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/gcor/mapflow/_gcor0".
2025-09-17 07:15:10 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:15:12 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.781011s.
2025-09-17 07:15:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/dilated_mask".
2025-09-17 07:15:12 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:15:12 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.012608s.
2025-09-17 07:15:14 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:15:14 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:15:15 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.881204s.
2025-09-17 07:15:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/PlotBrainmask".
2025-09-17 07:15:16 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:15:17 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 0.907756s.
2025-09-17 07:15:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/post_n4".
2025-09-17 07:15:18 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:15:19 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.708923s.
2025-09-17 07:15:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/EPI2MNI".
2025-09-17 07:15:20 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:15:20 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:15:46 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:15:46 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/SharpenEPI/sub-03_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/SharpenEPI/sub-03_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/SharpenEPI/sub-03_task-balloonanalogrisktask_run-03_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:16:48 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:16:48 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:16:48 | INFO | niworkflows | Generating visual report
2025-09-17 07:17:01 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 100.892974s.
2025-09-17 07:17:02 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:17:02 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:17:06 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 4.343878s.
2025-09-17 07:17:08 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/smoothness/mapflow/_smoothness0".
2025-09-17 07:17:08 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:17:08 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.218651s.
2025-09-17 07:17:10 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/outliers/mapflow/_outliers0".
2025-09-17 07:17:10 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:17:11 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.022308s.
2025-09-17 07:17:12 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/gcor/mapflow/_gcor0".
2025-09-17 07:17:12 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:17:14 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.744031s.
2025-09-17 07:17:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/dilated_mask".
2025-09-17 07:17:14 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:17:14 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.014634s.
2025-09-17 07:17:16 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:17:16 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:17:17 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.887398s.
2025-09-17 07:17:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/PlotBrainmask".
2025-09-17 07:17:18 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:17:19 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 0.914105s.
2025-09-17 07:17:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/final_masked".
2025-09-17 07:17:20 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:17:20 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.019142s.
2025-09-17 07:17:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/2681c774ee78a62d780373e351d8f28cdf9a768e/ResampleSegmentation".
2025-09-17 07:17:22 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:17:23 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.976627s.
2025-09-17 07:17:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/ds_report_norm".
2025-09-17 07:17:24 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:24 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004448s.
2025-09-17 07:17:24 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2681c774ee78a62d780373e351d8f28cdf9a768e/measures/mapflow/_measures0".
2025-09-17 07:17:24 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:17:25 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.565286s.
2025-09-17 07:17:26 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2681c774ee78a62d780373e351d8f28cdf9a768e/timeseries/mapflow/_timeseries0".
2025-09-17 07:17:26 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:17:26 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.021251s.
2025-09-17 07:17:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/subtract_mask".
2025-09-17 07:17:28 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:17:28 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.006385s.
2025-09-17 07:17:30 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:17:30 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:30 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004476s.
2025-09-17 07:17:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/ds_report_bmask".
2025-09-17 07:17:30 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:30 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.00442s.
2025-09-17 07:17:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/final_masked".
2025-09-17 07:17:30 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:17:30 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.018983s.
2025-09-17 07:17:32 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/ResampleSegmentation".
2025-09-17 07:17:32 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:17:33 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.935568s.
2025-09-17 07:17:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/ds_report_norm".
2025-09-17 07:17:34 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:34 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004484s.
2025-09-17 07:17:34 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/measures/mapflow/_measures0".
2025-09-17 07:17:34 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:17:35 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.52515s.
2025-09-17 07:17:36 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/timeseries/mapflow/_timeseries0".
2025-09-17 07:17:36 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:17:36 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.012968s.
2025-09-17 07:17:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/subtract_mask".
2025-09-17 07:17:38 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:17:38 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.008457s.
2025-09-17 07:17:40 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:17:40 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:40 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.00456s.
2025-09-17 07:17:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/ds_report_bmask".
2025-09-17 07:17:40 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:40 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004277s.
2025-09-17 07:17:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/final_masked".
2025-09-17 07:17:40 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:17:40 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.01884s.
2025-09-17 07:17:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/ResampleSegmentation".
2025-09-17 07:17:42 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:17:43 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 0.920519s.
2025-09-17 07:17:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/ds_report_norm".
2025-09-17 07:17:44 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:44 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004355s.
2025-09-17 07:17:44 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/measures/mapflow/_measures0".
2025-09-17 07:17:44 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:17:45 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.520231s.
2025-09-17 07:17:46 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/timeseries/mapflow/_timeseries0".
2025-09-17 07:17:46 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:17:46 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.012751s.
2025-09-17 07:17:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/subtract_mask".
2025-09-17 07:17:48 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:17:48 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.01392s.
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.004412s.
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/ds_report_bmask".
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.00426s.
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2681c774ee78a62d780373e351d8f28cdf9a768e/datasink/mapflow/_datasink0".
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000539s.
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/2681c774ee78a62d780373e351d8f28cdf9a768e/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.003955s.
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/parcels".
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:17:50 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.014373s.
2025-09-17 07:17:52 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/datasink/mapflow/_datasink0".
2025-09-17 07:17:52 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:17:52 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000398s.
2025-09-17 07:17:52 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:17:52 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:52 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004057s.
2025-09-17 07:17:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/parcels".
2025-09-17 07:17:52 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:17:52 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.022517s.
2025-09-17 07:17:54 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/datasink/mapflow/_datasink0".
2025-09-17 07:17:54 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:17:54 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000377s.
2025-09-17 07:17:54 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:17:54 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:17:54 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.003988s.
2025-09-17 07:17:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/parcels".
2025-09-17 07:17:54 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:17:54 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.012694s.
2025-09-17 07:17:56 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:17:56 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:17:58 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.611912s.
2025-09-17 07:17:58 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:17:58 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:18:00 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.639211s.
2025-09-17 07:18:00 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:18:00 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 1.7499479999999998s.
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/2681c774ee78a62d780373e351d8f28cdf9a768e/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004415s.
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/48d0ddb7d3e01f9a6fd7f4bac2a1d0ceb823deab/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004588s.
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/37f170063a9a5bf6b9f6df5ba57c3f6afea60798/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004374s.
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:18:02 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:18:06 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 3.882225s.
2025-09-17 07:18:08 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:18:08 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:18:12 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 3.901248s.
2025-09-17 07:18:12 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:18:12 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:18:16 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 3.911362s.
2025-09-17 07:18:18 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:18:18 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-09-17 07:18:18 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-09-17 07:18:18 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:18:18 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-09-17 07:18:18 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-09-17 07:18:18 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:18:18 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-09-17 07:18:18 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-09-17 07:18:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/Enhance".
2025-09-17 07:18:20 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:18:20 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.548556s.
2025-09-17 07:18:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/format_tpm_names".
2025-09-17 07:18:22 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:18:23 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 0.789743s.
2025-09-17 07:18:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/Grad".
2025-09-17 07:18:24 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:18:25 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 1.1673s.
2025-09-17 07:18:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/apply_mask".
2025-09-17 07:18:26 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:18:26 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.211816s.
2025-09-17 07:18:28 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/GradientThreshold".
2025-09-17 07:18:28 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:18:32 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 4.389212s.
2025-09-17 07:18:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/segmentation".
2025-09-17 07:18:34 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-09-17 07:19:11 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 36.860185s.
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/ArtifactMask".
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-09-17 07:19:13 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 1.113084s.
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/PlotHeadmask".
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 1.7164009999999998s.
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/harmonize".
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.565272s.
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/PlotSegmentation".
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 1.958641s.
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/provenance".
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.040943s.
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/ComputeQI2".
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-09-17 07:19:32 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 10.341174s.
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotAirmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/PlotAirmask".
2025-09-17 07:19:34 | INFO | nipype.workflow | [Node] Executing "PlotAirmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Finished "PlotAirmask", elapsed time 1.740548s.
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotArtmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/PlotArtmask".
2025-09-17 07:19:36 | INFO | nipype.workflow | [Node] Executing "PlotArtmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Finished "PlotArtmask", elapsed time 1.741329s.
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_headmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/ds_report_headmask".
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Executing "ds_report_headmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Finished "ds_report_headmask", elapsed time 0.004206s.
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/measures".
2025-09-17 07:19:38 | INFO | nipype.workflow | [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Finished "measures", elapsed time 3.588857s.
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_segm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/ds_report_segm".
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Executing "ds_report_segm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Finished "ds_report_segm", elapsed time 0.004063s.
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_noisefit" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/ds_report_noisefit".
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Executing "ds_report_noisefit" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Finished "ds_report_noisefit", elapsed time 0.004071s.
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_airmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/ds_report_airmask".
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Executing "ds_report_airmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Finished "ds_report_airmask", elapsed time 0.004108s.
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_artmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/ds_report_artmask".
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Executing "ds_report_artmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Finished "ds_report_artmask", elapsed time 0.004071s.
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject03.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_3834726..ds..sourcedata..raw..sub-03..anat..sub-03_T1w.nii.gz_metadata_FileSize0.004914505407214165.FileSizeUnitsGB.NumberOfVolumes1/datasink".
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:19:42 | INFO | nipype.workflow | [Node] Finished "datasink", elapsed time 0.000454s.
2025-09-17 07:19:44 | INFO | nipype.workflow | Generating reports...
2025-09-17 07:19:45 | INFO | nipype.workflow | Report generation finished (4 reports).
2025-09-17 07:19:45 | IMPORTANT | mriqc | Participant level finished successfully averaging 00h 06min 08s per subject.
2025-09-17 07:19:45 | INFO | mriqc | Generating BIDS derivatives metadata.
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MRIQC completed (elapsed time 00h 24min 34s).
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