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ds000001-mriqc/logs/duct/sub-01_2025.09.17T08.54.33-2159296stdout
Felix Hoffstaedter f4b3937bc4 [DATALAD RUNCMD] Compute MRIQC for sub-01 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-01 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "e0514950-e780-4f0e-b0d2-b16e0a2cf2ea",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-01",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-09-17 09:24:49 +02:00

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------------------------------------------------------------------
Running MRIQC version 24.1.0.dev0+gd5b13cb5.d20240826
----------------------------------------------------------------
NOTICE
Copyright © The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software contains code ultimately derived from the
PCP Quality Assessment Protocol (QAP;
http://preprocessed-connectomes-project.org/quality-assessment-protocol)
by C. Craddock, S. Giavasis, D. Clark, Z. Shezhad, and J. Pellman.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
----------------------------------------------------------------
* BIDS dataset path: /var/lib/condor/execute/dir_2132088/ds/sourcedata/raw.
* Output folder: ..
* Analysis levels: ['participant'].
------------------------------------------------------------------
2025-09-17 06:54:35 | IMPORTANT | mriqc | Extracting metadata and entities for 1 input runs of modality 't1w'...
2025-09-17 06:54:35 | IMPORTANT | mriqc | File size ('t1w'): 0.01|0.01 GB [maximum|average].
2025-09-17 06:54:35 | IMPORTANT | mriqc | Extracting metadata and entities for 3 input runs of modality 'bold'...
2025-09-17 06:54:35 | IMPORTANT | mriqc | File size ('bold'): 0.04|0.04 GB [maximum|average].
2025-09-17 06:54:35 | INFO | mriqc | MRIQC config file: /tmp/config-20250917-065433_ea5efb87-9251-4812-a0de-e1a50735da82.toml.
2025-09-17 06:54:40 | INFO | matplotlib.font_manager | generated new fontManager
2025-09-17 06:54:41 | IMPORTANT | mriqc | Building MRIQC's workflows...
2025-09-17 06:54:41 | INFO | nipype.workflow | Building functional MRIQC workflow for 3 BOLD runs..
2025-09-17 06:54:42 | INFO | nipype.workflow | Building anatomical MRIQC workflow for 1 NIfTI files..
2025-09-17 06:54:46 | IMPORTANT | mriqc | Workflow building finished (exit code 0).
2025-09-17 06:54:51 | INFO | nipype.workflow | Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
2025-09-17 06:54:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/mriqc_wf/anatMRIQC/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/conform".
2025-09-17 06:54:51 | INFO | nipype.workflow | [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
2025-09-17 06:54:51 | INFO | nipype.workflow | [Node] Finished "conform", elapsed time 0.293643s.
2025-09-17 06:54:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/pick_echo".
2025-09-17 06:54:53 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:54:53 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000118s.
2025-09-17 06:54:55 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/provenance/mapflow/_provenance0".
2025-09-17 06:54:55 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:54:55 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.083986s.
2025-09-17 06:54:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/8172159d87eff5af2c6181b7f1f0e89f7a078e99/pick_echo".
2025-09-17 06:54:55 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:54:55 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000106s.
2025-09-17 06:54:57 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8172159d87eff5af2c6181b7f1f0e89f7a078e99/provenance/mapflow/_provenance0".
2025-09-17 06:54:57 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:54:57 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.08371s.
2025-09-17 06:54:57 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.pick_echo" in "/tmp/mriqc_wf/funcMRIQC/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/pick_echo".
2025-09-17 06:54:57 | INFO | nipype.workflow | [Node] Executing "pick_echo" <mriqc.interfaces.functional.SelectEcho>
2025-09-17 06:54:57 | INFO | nipype.workflow | [Node] Finished "pick_echo", elapsed time 0.000113s.
2025-09-17 06:54:59 | INFO | nipype.workflow | [Node] Setting-up "_provenance0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/provenance/mapflow/_provenance0".
2025-09-17 06:54:59 | INFO | nipype.workflow | [Node] Executing "_provenance0" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 06:54:59 | INFO | nipype.workflow | [Node] Finished "_provenance0", elapsed time 0.085054s.
2025-09-17 06:54:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/pre_clip".
2025-09-17 06:54:59 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 06:55:10 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 10.493613s.
2025-09-17 06:55:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/RotationMask".
2025-09-17 06:55:11 | INFO | nipype.workflow | [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
2025-09-17 06:55:11 | INFO | nipype.workflow | [Node] Finished "RotationMask", elapsed time 0.50274s.
2025-09-17 06:55:13 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicNoise" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicNoise".
2025-09-17 06:55:13 | INFO | nipype.workflow | [Node] Executing "PlotMosaicNoise" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 06:55:18 | INFO | nipype.workflow | [Node] Finished "PlotMosaicNoise", elapsed time 4.78868s.
2025-09-17 06:55:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/non_steady_state_detector".
2025-09-17 06:55:19 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:55:19 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.213393s.
2025-09-17 06:55:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/8172159d87eff5af2c6181b7f1f0e89f7a078e99/non_steady_state_detector".
2025-09-17 06:55:21 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:55:21 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.211507s.
2025-09-17 06:55:23 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/tmp/mriqc_wf/funcMRIQC/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/non_steady_state_detector".
2025-09-17 06:55:23 | INFO | nipype.workflow | [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
2025-09-17 06:55:23 | INFO | nipype.workflow | [Node] Finished "non_steady_state_detector", elapsed time 0.211537s.
2025-09-17 06:55:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/pre_n4".
2025-09-17 06:55:25 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 06:56:26 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 60.795559s.
2025-09-17 06:56:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_background" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/ds_report_background".
2025-09-17 06:56:27 | INFO | nipype.workflow | [Node] Executing "ds_report_background" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 06:56:27 | INFO | nipype.workflow | [Node] Finished "ds_report_background", elapsed time 0.008113s.
2025-09-17 06:56:27 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/sanitize/mapflow/_sanitize0".
2025-09-17 06:56:27 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:56:29 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.281882s.
2025-09-17 06:56:31 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/8172159d87eff5af2c6181b7f1f0e89f7a078e99/sanitize/mapflow/_sanitize0".
2025-09-17 06:56:31 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:56:33 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 2.297762s.
2025-09-17 06:56:35 | INFO | nipype.workflow | [Node] Setting-up "_sanitize0" in "/tmp/mriqc_wf/funcMRIQC/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/sanitize/mapflow/_sanitize0".
2025-09-17 06:56:35 | INFO | nipype.workflow | [Node] Executing "_sanitize0" <niworkflows.interfaces.header.SanitizeImage>
2025-09-17 06:56:35 | INFO | nipype.workflow | [Node] Finished "_sanitize0", elapsed time 0.045761s.
2025-09-17 06:56:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/synthstrip".
2025-09-17 06:56:37 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 06:57:23 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 45.952371s.
2025-09-17 06:57:25 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/estimate_hm".
2025-09-17 06:57:25 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:01:11 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 225.930336s.
2025-09-17 07:01:13 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:01:13 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:01:15 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.466729s.
2025-09-17 07:01:15 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8172159d87eff5af2c6181b7f1f0e89f7a078e99/estimate_hm".
2025-09-17 07:01:15 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:04:50 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 214.872628s.
2025-09-17 07:04:51 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:04:51 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:04:53 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.399292s.
2025-09-17 07:04:53 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.estimate_hm" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/estimate_hm".
2025-09-17 07:04:53 | INFO | nipype.workflow | [Node] Executing "estimate_hm" <nipype.interfaces.afni.preprocess.Volreg>
2025-09-17 07:08:32 | INFO | nipype.workflow | [Node] Finished "estimate_hm", elapsed time 219.003855s.
2025-09-17 07:08:33 | INFO | nipype.workflow | [Node] Setting-up "_SpikesMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/SpikesMask/mapflow/_SpikesMask0".
2025-09-17 07:08:33 | INFO | nipype.workflow | [Node] Executing "_SpikesMask0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:08:35 | INFO | nipype.workflow | [Node] Finished "_SpikesMask0", elapsed time 1.4482059999999999s.
2025-09-17 07:08:35 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/post_n4".
2025-09-17 07:08:35 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:08:50 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 14.74689s.
2025-09-17 07:08:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/smoothness".
2025-09-17 07:08:51 | INFO | nipype.workflow | [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:08:54 | INFO | nipype.workflow | [Node] Finished "smoothness", elapsed time 2.727503s.
2025-09-17 07:08:55 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotMosaicZoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/PlotMosaicZoomed".
2025-09-17 07:08:55 | INFO | nipype.workflow | [Node] Executing "PlotMosaicZoomed" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:08:59 | INFO | nipype.workflow | [Node] Finished "PlotMosaicZoomed", elapsed time 3.8681039999999998s.
2025-09-17 07:08:59 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/PlotBrainmask".
2025-09-17 07:08:59 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:09:02 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 2.5555149999999998s.
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:09:03 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:09:19 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 15.958281s.
2025-09-17 07:09:21 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/ComputeFD".
2025-09-17 07:09:21 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:09:21 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.00389s.
2025-09-17 07:09:23 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:23 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:24 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.710731s.
2025-09-17 07:09:25 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8172159d87eff5af2c6181b7f1f0e89f7a078e99/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:09:25 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:09:41 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 16.041056s.
2025-09-17 07:09:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/8172159d87eff5af2c6181b7f1f0e89f7a078e99/ComputeFD".
2025-09-17 07:09:43 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:09:43 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.006711s.
2025-09-17 07:09:45 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:09:45 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:09:46 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.712554s.
2025-09-17 07:09:47 | INFO | nipype.workflow | [Node] Setting-up "_apply_hmc0" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/apply_hmc/mapflow/_apply_hmc0".
2025-09-17 07:09:47 | INFO | nipype.workflow | [Node] Executing "_apply_hmc0" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:10:04 | INFO | nipype.workflow | [Node] Finished "_apply_hmc0", elapsed time 16.279844s.
2025-09-17 07:10:05 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/tmp/mriqc_wf/funcMRIQC/fMRI_HMC/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/ComputeFD".
2025-09-17 07:10:05 | INFO | nipype.workflow | [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
2025-09-17 07:10:05 | INFO | nipype.workflow | [Node] Finished "ComputeFD", elapsed time 0.006806s.
2025-09-17 07:10:07 | INFO | nipype.workflow | [Node] Setting-up "_SpikesFinderBgMask0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/SpikesFinderBgMask/mapflow/_SpikesFinderBgMask0".
2025-09-17 07:10:07 | INFO | nipype.workflow | [Node] Executing "_SpikesFinderBgMask0" <mriqc.interfaces.functional.Spikes>
2025-09-17 07:10:08 | INFO | nipype.workflow | [Node] Finished "_SpikesFinderBgMask0", elapsed time 0.771102s.
2025-09-17 07:10:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/anatMRIQC/synthstrip_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/final_masked".
2025-09-17 07:10:09 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:10:10 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.276144s.
2025-09-17 07:10:11 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization".
2025-09-17 07:10:11 | INFO | nipype.workflow | [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:10:12 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:11:10 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/stderr.nipype-init).
2025-09-17 07:11:10 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/t1w-mni_registration_testing_000.json.
2025-09-17 07:11:10 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ ants_t1_to_mni, ants_t1_to_mni_Warped.nii.gz ] --transform Rigid[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.2 ] --convergence [ 20, 1e-07, 15 ] --smoothing-sigmas 4.0vox --shrink-factors 2 --use-histogram-matching 0 --transform Affine[ 1.0 ] --metric Mattes[ /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz, /tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/moving_masked.nii.gz, 1, 56, Random, 0.1 ] --convergence [ 15, 1e-08, 5 ] --smoothing-sigmas 2.0vox --shrink-factors 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:11:24 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:11:25 | INFO | niworkflows | Report - setting fixed (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/fixed_masked.nii.gz) and moving (/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/SpatialNormalization/ants_t1_to_mni_Warped.nii.gz) images
2025-09-17 07:11:25 | INFO | niworkflows | Generating visual report
2025-09-17 07:11:41 | INFO | nipype.workflow | [Node] Finished "SpatialNormalization", elapsed time 90.035523s.
2025-09-17 07:11:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_zoomed" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/ds_report_zoomed".
2025-09-17 07:11:43 | INFO | nipype.workflow | [Node] Executing "ds_report_zoomed" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:43 | INFO | nipype.workflow | [Node] Finished "ds_report_zoomed", elapsed time 0.004502s.
2025-09-17 07:11:43 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/ds_report_bmask".
2025-09-17 07:11:43 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:11:43 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.004416s.
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/mean/mapflow/_mean0".
2025-09-17 07:11:44 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:11:45 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.967555s.
2025-09-17 07:11:45 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:11:45 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:11:46 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.716579s.
2025-09-17 07:11:47 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/quality/mapflow/_quality0".
2025-09-17 07:11:47 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:11:50 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.24856s.
2025-09-17 07:11:51 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/8172159d87eff5af2c6181b7f1f0e89f7a078e99/mean/mapflow/_mean0".
2025-09-17 07:11:51 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:11:52 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.894053s.
2025-09-17 07:11:53 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/8172159d87eff5af2c6181b7f1f0e89f7a078e99/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:11:53 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:11:54 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.731781s.
2025-09-17 07:11:55 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8172159d87eff5af2c6181b7f1f0e89f7a078e99/quality/mapflow/_quality0".
2025-09-17 07:11:55 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:11:58 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.22907s.
2025-09-17 07:11:59 | INFO | nipype.workflow | [Node] Setting-up "_mean0" in "/tmp/mriqc_wf/funcMRIQC/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/mean/mapflow/_mean0".
2025-09-17 07:11:59 | INFO | nipype.workflow | [Node] Executing "_mean0" <nipype.interfaces.afni.utils.TStat>
2025-09-17 07:12:00 | INFO | nipype.workflow | [Node] Finished "_mean0", elapsed time 0.930704s.
2025-09-17 07:12:01 | INFO | nipype.workflow | [Node] Setting-up "_compute_tsnr0" in "/tmp/mriqc_wf/funcMRIQC/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/compute_tsnr/mapflow/_compute_tsnr0".
2025-09-17 07:12:01 | INFO | nipype.workflow | [Node] Executing "_compute_tsnr0" <nipype.algorithms.confounds.TSNR>
2025-09-17 07:12:02 | INFO | nipype.workflow | [Node] Finished "_compute_tsnr0", elapsed time 0.744162s.
2025-09-17 07:12:03 | INFO | nipype.workflow | [Node] Setting-up "_quality0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/quality/mapflow/_quality0".
2025-09-17 07:12:03 | INFO | nipype.workflow | [Node] Executing "_quality0" <nipype.interfaces.afni.preprocess.QualityIndex>
2025-09-17 07:12:06 | INFO | nipype.workflow | [Node] Finished "_quality0", elapsed time 2.24753s.
2025-09-17 07:12:07 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_norm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/ds_report_norm".
2025-09-17 07:12:07 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:07 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.004509s.
2025-09-17 07:12:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/pre_clip".
2025-09-17 07:12:08 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:12:08 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.262855s.
2025-09-17 07:12:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/SharpenEPI".
2025-09-17 07:12:09 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:11 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.73214s.
2025-09-17 07:12:11 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:12:11 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:12 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.973379s.
2025-09-17 07:12:13 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:12:13 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:14 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 1.058751s.
2025-09-17 07:12:15 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:12:15 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:16 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 1.029647s.
2025-09-17 07:12:17 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/pre_clip".
2025-09-17 07:12:17 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:12:18 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.260667s.
2025-09-17 07:12:19 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8172159d87eff5af2c6181b7f1f0e89f7a078e99/SharpenEPI".
2025-09-17 07:12:19 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:21 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.866845s.
2025-09-17 07:12:21 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:12:21 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:22 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.950107s.
2025-09-17 07:12:23 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:12:23 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:24 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.992071s.
2025-09-17 07:12:25 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:12:25 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:26 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 1.011077s.
2025-09-17 07:12:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_clip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/pre_clip".
2025-09-17 07:12:27 | INFO | nipype.workflow | [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
2025-09-17 07:12:28 | INFO | nipype.workflow | [Node] Finished "pre_clip", elapsed time 0.27076s.
2025-09-17 07:12:29 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/SharpenEPI".
2025-09-17 07:12:29 | INFO | nipype.workflow | [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:31 | INFO | nipype.workflow | [Node] Finished "SharpenEPI", elapsed time 1.818845s.
2025-09-17 07:12:31 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicMean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/PlotMosaicMean/mapflow/_PlotMosaicMean0".
2025-09-17 07:12:31 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicMean0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:32 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicMean0", elapsed time 0.963255s.
2025-09-17 07:12:33 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicNoise0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/PlotMosaicNoise/mapflow/_PlotMosaicNoise0".
2025-09-17 07:12:33 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicNoise0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:34 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicNoise0", elapsed time 0.986587s.
2025-09-17 07:12:35 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicSD0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/PlotMosaicSD/mapflow/_PlotMosaicSD0".
2025-09-17 07:12:35 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicSD0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:12:36 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicSD0", elapsed time 1.009184s.
2025-09-17 07:12:37 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/pre_n4".
2025-09-17 07:12:37 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:39 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.773501s.
2025-09-17 07:12:39 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:12:39 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:39 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.00578s.
2025-09-17 07:12:40 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:12:40 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:40 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.005162s.
2025-09-17 07:12:40 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:12:40 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:40 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004731s.
2025-09-17 07:12:40 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/pre_n4".
2025-09-17 07:12:40 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:42 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.714619s.
2025-09-17 07:12:43 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:12:43 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:43 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.007853s.
2025-09-17 07:12:44 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:12:44 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:44 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004827s.
2025-09-17 07:12:44 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:12:44 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:44 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004705s.
2025-09-17 07:12:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.pre_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/pre_n4".
2025-09-17 07:12:44 | INFO | nipype.workflow | [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:12:45 | INFO | nipype.workflow | [Node] Finished "pre_n4", elapsed time 1.679861s.
2025-09-17 07:12:47 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_mean0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/ds_report_mean/mapflow/_ds_report_mean0".
2025-09-17 07:12:47 | INFO | nipype.workflow | [Node] Executing "_ds_report_mean0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:47 | INFO | nipype.workflow | [Node] Finished "_ds_report_mean0", elapsed time 0.004993s.
2025-09-17 07:12:48 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_background0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/ds_report_background/mapflow/_ds_report_background0".
2025-09-17 07:12:48 | INFO | nipype.workflow | [Node] Executing "_ds_report_background0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:48 | INFO | nipype.workflow | [Node] Finished "_ds_report_background0", elapsed time 0.004831s.
2025-09-17 07:12:48 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_stdev0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/ds_report_stdev/mapflow/_ds_report_stdev0".
2025-09-17 07:12:48 | INFO | nipype.workflow | [Node] Executing "_ds_report_stdev0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:12:48 | INFO | nipype.workflow | [Node] Finished "_ds_report_stdev0", elapsed time 0.004766s.
2025-09-17 07:12:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/synthstrip".
2025-09-17 07:12:48 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:13:27 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 39.368554s.
2025-09-17 07:13:27 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/synthstrip".
2025-09-17 07:13:27 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:14:07 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 39.866921s.
2025-09-17 07:14:09 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.synthstrip" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/synthstrip".
2025-09-17 07:14:09 | INFO | nipype.workflow | [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
2025-09-17 07:14:49 | INFO | nipype.workflow | [Node] Finished "synthstrip", elapsed time 39.760874s.
2025-09-17 07:14:49 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/post_n4".
2025-09-17 07:14:49 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:14:50 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.838596s.
2025-09-17 07:14:51 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/EPI2MNI".
2025-09-17 07:14:51 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:14:51 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:15:17 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:15:17 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/SharpenEPI/sub-01_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/SharpenEPI/sub-01_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/SharpenEPI/sub-01_task-balloonanalogrisktask_run-01_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:16:22 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:16:22 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:16:22 | INFO | niworkflows | Generating visual report
2025-09-17 07:16:40 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 108.68592s.
2025-09-17 07:16:42 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:16:42 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:16:48 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 6.261925s.
2025-09-17 07:16:50 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/smoothness/mapflow/_smoothness0".
2025-09-17 07:16:50 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:16:50 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.313599s.
2025-09-17 07:16:52 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/outliers/mapflow/_outliers0".
2025-09-17 07:16:52 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:16:53 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.305209s.
2025-09-17 07:16:54 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/gcor/mapflow/_gcor0".
2025-09-17 07:16:54 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:16:55 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.8888449999999999s.
2025-09-17 07:16:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/dilated_mask".
2025-09-17 07:16:58 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:16:58 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.014039s.
2025-09-17 07:17:00 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:17:00 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:17:01 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 0.990516s.
2025-09-17 07:17:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/PlotBrainmask".
2025-09-17 07:17:02 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:17:03 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.322158s.
2025-09-17 07:17:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/post_n4".
2025-09-17 07:17:04 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:17:04 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.835433s.
2025-09-17 07:17:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8172159d87eff5af2c6181b7f1f0e89f7a078e99/EPI2MNI".
2025-09-17 07:17:06 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:17:06 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:17:33 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:17:33 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8172159d87eff5af2c6181b7f1f0e89f7a078e99/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8172159d87eff5af2c6181b7f1f0e89f7a078e99/SharpenEPI/sub-01_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8172159d87eff5af2c6181b7f1f0e89f7a078e99/SharpenEPI/sub-01_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8172159d87eff5af2c6181b7f1f0e89f7a078e99/SharpenEPI/sub-01_task-balloonanalogrisktask_run-02_bold_desc-realigned_valid_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:18:42 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:18:42 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8172159d87eff5af2c6181b7f1f0e89f7a078e99/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:18:42 | INFO | niworkflows | Generating visual report
2025-09-17 07:19:00 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 114.927235s.
2025-09-17 07:19:02 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8172159d87eff5af2c6181b7f1f0e89f7a078e99/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:19:02 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:19:08 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 6.580792s.
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8172159d87eff5af2c6181b7f1f0e89f7a078e99/smoothness/mapflow/_smoothness0".
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:19:10 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.376059s.
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8172159d87eff5af2c6181b7f1f0e89f7a078e99/outliers/mapflow/_outliers0".
2025-09-17 07:19:12 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:19:13 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.3795169999999999s.
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8172159d87eff5af2c6181b7f1f0e89f7a078e99/gcor/mapflow/_gcor0".
2025-09-17 07:19:14 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:19:16 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.945568s.
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/dilated_mask".
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:19:18 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.016428s.
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:19:20 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:19:21 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 1.074383s.
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/PlotBrainmask".
2025-09-17 07:19:22 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:19:23 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.7259959999999999s.
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.post_n4" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/post_n4".
2025-09-17 07:19:24 | INFO | nipype.workflow | [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2025-09-17 07:19:25 | INFO | nipype.workflow | [Node] Finished "post_n4", elapsed time 0.944954s.
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/EPI2MNI".
2025-09-17 07:19:26 | INFO | nipype.workflow | [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
2025-09-17 07:19:26 | INFO | niworkflows | Estimating initial transform using AffineInitializer
2025-09-17 07:19:54 | INFO | niworkflows | Terminal outputs of initialization saved (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/EPI2MNI/stderr.nipype-init).
2025-09-17 07:19:54 | INFO | niworkflows | Loading settings from file /opt/conda/lib/python3.11/site-packages/niworkflows/data/boldref-mni_registration_precise_000.json.
2025-09-17 07:19:54 | INFO | niworkflows | Retry #1, commandline:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 0 --initial-moving-transform [ /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/EPI2MNI/transform.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ epi_to_mni, epi_to_mni_Warped.nii.gz ] --transform Rigid[ 0.05 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/SharpenEPI/sub-01_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 10000x1000x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform Affine[ 0.08 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/SharpenEPI/sub-01_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 56, Regular, 0.25 ] --convergence [ 500x250x100, 1e-06, 20 ] --smoothing-sigmas 4.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/SharpenEPI/sub-01_task-balloonanalogrisktask_run-03_desc-realigned_bold_tstat_corrected.nii.gz, 1, 4, None, 1 ] --convergence [ 100x30x20, 1e-06, 10 ] --smoothing-sigmas 3.0x2.0x1.0vox --shrink-factors 8x4x2 --use-histogram-matching 1 --masks [ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz, /tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/synthstrip/clipped_corrected_desc-brain_mask.nii.gz ] --winsorize-image-intensities [ 0.005, 0.995 ] --write-composite-transform 1
2025-09-17 07:21:06 | INFO | niworkflows | Successful spatial normalization (retry #1).
2025-09-17 07:21:06 | INFO | niworkflows | Report - setting fixed (/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz) and moving (/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/EPI2MNI/epi_to_mni_Warped.nii.gz) images
2025-09-17 07:21:06 | INFO | niworkflows | Generating visual report
2025-09-17 07:21:26 | INFO | nipype.workflow | [Node] Finished "EPI2MNI", elapsed time 120.014225s.
2025-09-17 07:21:28 | INFO | nipype.workflow | [Node] Setting-up "_ComputeDVARS0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/ComputeDVARS/mapflow/_ComputeDVARS0".
2025-09-17 07:21:28 | INFO | nipype.workflow | [Node] Executing "_ComputeDVARS0" <nipype.algorithms.confounds.ComputeDVARS>
2025-09-17 07:21:35 | INFO | nipype.workflow | [Node] Finished "_ComputeDVARS0", elapsed time 6.827425s.
2025-09-17 07:21:36 | INFO | nipype.workflow | [Node] Setting-up "_smoothness0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/smoothness/mapflow/_smoothness0".
2025-09-17 07:21:36 | INFO | nipype.workflow | [Node] Executing "_smoothness0" <nipype.interfaces.afni.utils.FWHMx>
2025-09-17 07:21:36 | INFO | nipype.workflow | [Node] Finished "_smoothness0", elapsed time 0.335709s.
2025-09-17 07:21:38 | INFO | nipype.workflow | [Node] Setting-up "_outliers0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/outliers/mapflow/_outliers0".
2025-09-17 07:21:38 | INFO | nipype.workflow | [Node] Executing "_outliers0" <nipype.interfaces.afni.preprocess.OutlierCount>
2025-09-17 07:21:39 | INFO | nipype.workflow | [Node] Finished "_outliers0", elapsed time 1.3745479999999999s.
2025-09-17 07:21:40 | INFO | nipype.workflow | [Node] Setting-up "_gcor0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/gcor/mapflow/_gcor0".
2025-09-17 07:21:40 | INFO | nipype.workflow | [Node] Executing "_gcor0" <mriqc.interfaces.transitional.GCOR>
2025-09-17 07:21:42 | INFO | nipype.workflow | [Node] Finished "_gcor0", elapsed time 1.969015s.
2025-09-17 07:21:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.dilated_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/dilated_mask".
2025-09-17 07:21:44 | INFO | nipype.workflow | [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
2025-09-17 07:21:44 | INFO | nipype.workflow | [Node] Finished "dilated_mask", elapsed time 0.013599s.
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Setting-up "_PlotMosaicZoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/PlotMosaicZoomed/mapflow/_PlotMosaicZoomed0".
2025-09-17 07:21:46 | INFO | nipype.workflow | [Node] Executing "_PlotMosaicZoomed0" <nireports.interfaces.mosaic.PlotMosaic>
2025-09-17 07:21:47 | INFO | nipype.workflow | [Node] Finished "_PlotMosaicZoomed0", elapsed time 1.058798s.
2025-09-17 07:21:48 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.PlotBrainmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/PlotBrainmask".
2025-09-17 07:21:48 | INFO | nipype.workflow | [Node] Executing "PlotBrainmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:21:49 | INFO | nipype.workflow | [Node] Finished "PlotBrainmask", elapsed time 1.427427s.
2025-09-17 07:21:50 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/final_masked".
2025-09-17 07:21:50 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:21:50 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.02405s.
2025-09-17 07:21:52 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/ResampleSegmentation".
2025-09-17 07:21:52 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:21:53 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.348475s.
2025-09-17 07:21:54 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/ds_report_norm".
2025-09-17 07:21:54 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:21:54 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005377s.
2025-09-17 07:21:54 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/measures/mapflow/_measures0".
2025-09-17 07:21:54 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:21:55 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.735523s.
2025-09-17 07:21:56 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/timeseries/mapflow/_timeseries0".
2025-09-17 07:21:56 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:21:56 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.020323s.
2025-09-17 07:21:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/subtract_mask".
2025-09-17 07:21:58 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:21:58 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.018151s.
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.005479s.
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/ds_report_bmask".
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.005112s.
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/final_masked".
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:22:00 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.02398s.
2025-09-17 07:22:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/8172159d87eff5af2c6181b7f1f0e89f7a078e99/ResampleSegmentation".
2025-09-17 07:22:02 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:22:03 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.235128s.
2025-09-17 07:22:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/ds_report_norm".
2025-09-17 07:22:04 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:04 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005393s.
2025-09-17 07:22:04 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8172159d87eff5af2c6181b7f1f0e89f7a078e99/measures/mapflow/_measures0".
2025-09-17 07:22:04 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:22:04 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.650919s.
2025-09-17 07:22:06 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8172159d87eff5af2c6181b7f1f0e89f7a078e99/timeseries/mapflow/_timeseries0".
2025-09-17 07:22:06 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:22:06 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.020309s.
2025-09-17 07:22:08 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/subtract_mask".
2025-09-17 07:22:08 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:22:08 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.018105s.
2025-09-17 07:22:10 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:22:10 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:10 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.005396s.
2025-09-17 07:22:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/ds_report_bmask".
2025-09-17 07:22:10 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:10 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.005426s.
2025-09-17 07:22:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.synthstrip_wf.final_masked" in "/tmp/mriqc_wf/funcMRIQC/synthstrip_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/final_masked".
2025-09-17 07:22:10 | INFO | nipype.workflow | [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:22:10 | INFO | nipype.workflow | [Node] Finished "final_masked", elapsed time 0.023843s.
2025-09-17 07:22:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/tmp/mriqc_wf/funcMRIQC/SpatialNormalization/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/ResampleSegmentation".
2025-09-17 07:22:12 | INFO | nipype.workflow | [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
2025-09-17 07:22:13 | INFO | nipype.workflow | [Node] Finished "ResampleSegmentation", elapsed time 1.287325s.
2025-09-17 07:22:14 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_norm" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/ds_report_norm".
2025-09-17 07:22:14 | INFO | nipype.workflow | [Node] Executing "ds_report_norm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:14 | INFO | nipype.workflow | [Node] Finished "ds_report_norm", elapsed time 0.005068s.
2025-09-17 07:22:14 | INFO | nipype.workflow | [Node] Setting-up "_measures0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/measures/mapflow/_measures0".
2025-09-17 07:22:14 | INFO | nipype.workflow | [Node] Executing "_measures0" <mriqc.interfaces.functional.FunctionalQC>
2025-09-17 07:22:14 | INFO | nipype.workflow | [Node] Finished "_measures0", elapsed time 0.686232s.
2025-09-17 07:22:16 | INFO | nipype.workflow | [Node] Setting-up "_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/timeseries/mapflow/_timeseries0".
2025-09-17 07:22:16 | INFO | nipype.workflow | [Node] Executing "_timeseries0" <mriqc.interfaces.functional.GatherTimeseries>
2025-09-17 07:22:16 | INFO | nipype.workflow | [Node] Finished "_timeseries0", elapsed time 0.015002s.
2025-09-17 07:22:18 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.subtract_mask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/subtract_mask".
2025-09-17 07:22:18 | INFO | nipype.workflow | [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
2025-09-17 07:22:18 | INFO | nipype.workflow | [Node] Finished "subtract_mask", elapsed time 0.017948s.
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_zoomed0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/ds_report_zoomed/mapflow/_ds_report_zoomed0".
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Executing "_ds_report_zoomed0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Finished "_ds_report_zoomed0", elapsed time 0.005343s.
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.ds_report_bmask" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/ds_report_bmask".
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Executing "ds_report_bmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Finished "ds_report_bmask", elapsed time 0.005502s.
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/datasink/mapflow/_datasink0".
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000534s.
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004582s.
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/parcels".
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:22:20 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.018131s.
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8172159d87eff5af2c6181b7f1f0e89f7a078e99/datasink/mapflow/_datasink0".
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000441s.
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/8172159d87eff5af2c6181b7f1f0e89f7a078e99/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004532s.
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/parcels".
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:22:22 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.017698s.
2025-09-17 07:22:24 | INFO | nipype.workflow | [Node] Setting-up "_datasink0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/datasink/mapflow/_datasink0".
2025-09-17 07:22:24 | INFO | nipype.workflow | [Node] Executing "_datasink0" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:22:24 | INFO | nipype.workflow | [Node] Finished "_datasink0", elapsed time 0.000419s.
2025-09-17 07:22:24 | INFO | nipype.workflow | [Node] Setting-up "_ds_timeseries0" in "/tmp/mriqc_wf/funcMRIQC/ComputeIQMs/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/ds_timeseries/mapflow/_ds_timeseries0".
2025-09-17 07:22:24 | INFO | nipype.workflow | [Node] Executing "_ds_timeseries0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:24 | INFO | nipype.workflow | [Node] Finished "_ds_timeseries0", elapsed time 0.004501s.
2025-09-17 07:22:24 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.funcMRIQC.func_report_wf.parcels" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/parcels".
2025-09-17 07:22:24 | INFO | nipype.workflow | [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:22:24 | INFO | nipype.workflow | [Node] Finished "parcels", elapsed time 0.016008s.
2025-09-17 07:22:26 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:22:26 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:22:29 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 2.988462s.
2025-09-17 07:22:30 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:22:30 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:22:32 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 2.675579s.
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Setting-up "_BigPlot0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/BigPlot/mapflow/_BigPlot0".
2025-09-17 07:22:34 | INFO | nipype.workflow | [Node] Executing "_BigPlot0" <nireports.interfaces.fmri.FMRISummary>
2025-09-17 07:22:37 | INFO | nipype.workflow | [Node] Finished "_BigPlot0", elapsed time 2.93261s.
2025-09-17 07:22:38 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/4adf8650481a6d2a1bbc586ccc2cf5c0e483cf84/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:22:38 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:38 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.005038s.
2025-09-17 07:22:38 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/8172159d87eff5af2c6181b7f1f0e89f7a078e99/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:22:38 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:38 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.005015s.
2025-09-17 07:22:38 | INFO | nipype.workflow | [Node] Setting-up "_ds_report_carpet0" in "/tmp/mriqc_wf/funcMRIQC/func_report_wf/b0f879d4a32360b48f1762a637c3ae6d26d6b2e4/ds_report_carpet/mapflow/_ds_report_carpet0".
2025-09-17 07:22:38 | INFO | nipype.workflow | [Node] Executing "_ds_report_carpet0" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:22:38 | INFO | nipype.workflow | [Node] Finished "_ds_report_carpet0", elapsed time 0.004959s.
2025-09-17 07:22:38 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:22:38 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w0" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:22:43 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w0", elapsed time 5.244086s.
2025-09-17 07:22:44 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:22:44 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w1" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:22:49 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w1", elapsed time 5.293342s.
2025-09-17 07:22:50 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:22:50 | INFO | nipype.workflow | [Node] Executing "_tpms_std2t1w2" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2025-09-17 07:22:55 | INFO | nipype.workflow | [Node] Finished "_tpms_std2t1w2", elapsed time 5.196195s.
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w0" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w0".
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w0" - collecting precomputed outputs
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] "_tpms_std2t1w0" found cached.
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w1" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w1".
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w1" - collecting precomputed outputs
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] "_tpms_std2t1w1" found cached.
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] Setting-up "_tpms_std2t1w2" in "/tmp/mriqc_wf/anatMRIQC/SpatialNormalization/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/tpms_std2t1w/mapflow/_tpms_std2t1w2".
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] Cached "_tpms_std2t1w2" - collecting precomputed outputs
2025-09-17 07:22:56 | INFO | nipype.workflow | [Node] "_tpms_std2t1w2" found cached.
2025-09-17 07:22:58 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Enhance" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/Enhance".
2025-09-17 07:22:58 | INFO | nipype.workflow | [Node] Executing "Enhance" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:22:58 | INFO | nipype.workflow | [Node] Finished "Enhance", elapsed time 0.670019s.
2025-09-17 07:23:00 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.format_tpm_names" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/format_tpm_names".
2025-09-17 07:23:00 | INFO | nipype.workflow | [Node] Executing "format_tpm_names" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:23:01 | INFO | nipype.workflow | [Node] Finished "format_tpm_names", elapsed time 1.07594s.
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.Grad" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/Grad".
2025-09-17 07:23:02 | INFO | nipype.workflow | [Node] Executing "Grad" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:23:03 | INFO | nipype.workflow | [Node] Finished "Grad", elapsed time 1.7673299999999998s.
2025-09-17 07:23:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.apply_mask" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/apply_mask".
2025-09-17 07:23:04 | INFO | nipype.workflow | [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2025-09-17 07:23:04 | INFO | nipype.workflow | [Node] Finished "apply_mask", elapsed time 0.270547s.
2025-09-17 07:23:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.GradientThreshold" in "/tmp/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/GradientThreshold".
2025-09-17 07:23:06 | INFO | nipype.workflow | [Node] Executing "GradientThreshold" <nipype.interfaces.utility.wrappers.Function>
2025-09-17 07:23:11 | INFO | nipype.workflow | [Node] Finished "GradientThreshold", elapsed time 5.623505s.
2025-09-17 07:23:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.brain_tissue_segmentation.segmentation" in "/tmp/mriqc_wf/anatMRIQC/brain_tissue_segmentation/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/segmentation".
2025-09-17 07:23:12 | INFO | nipype.workflow | [Node] Executing "segmentation" <nipype.interfaces.ants.segmentation.Atropos>
2025-09-17 07:24:02 | INFO | nipype.workflow | [Node] Finished "segmentation", elapsed time 50.491351s.
2025-09-17 07:24:04 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/mriqc_wf/anatMRIQC/AirMaskWorkflow/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/ArtifactMask".
2025-09-17 07:24:04 | INFO | nipype.workflow | [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
2025-09-17 07:24:05 | INFO | nipype.workflow | [Node] Finished "ArtifactMask", elapsed time 1.586365s.
2025-09-17 07:24:06 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotHeadmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/PlotHeadmask".
2025-09-17 07:24:06 | INFO | nipype.workflow | [Node] Executing "PlotHeadmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:24:08 | INFO | nipype.workflow | [Node] Finished "PlotHeadmask", elapsed time 2.170932s.
2025-09-17 07:24:10 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/harmonize".
2025-09-17 07:24:10 | INFO | nipype.workflow | [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
2025-09-17 07:24:10 | INFO | nipype.workflow | [Node] Finished "harmonize", elapsed time 0.780402s.
2025-09-17 07:24:12 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotSegmentation" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/PlotSegmentation".
2025-09-17 07:24:12 | INFO | nipype.workflow | [Node] Executing "PlotSegmentation" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:24:14 | INFO | nipype.workflow | [Node] Finished "PlotSegmentation", elapsed time 2.4601290000000002s.
2025-09-17 07:24:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/provenance".
2025-09-17 07:24:16 | INFO | nipype.workflow | [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
2025-09-17 07:24:16 | INFO | nipype.workflow | [Node] Finished "provenance", elapsed time 0.047287s.
2025-09-17 07:24:16 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/ComputeQI2".
2025-09-17 07:24:16 | INFO | nipype.workflow | [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
2025-09-17 07:24:28 | INFO | nipype.workflow | [Node] Finished "ComputeQI2", elapsed time 12.118045s.
2025-09-17 07:24:30 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotAirmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/PlotAirmask".
2025-09-17 07:24:30 | INFO | nipype.workflow | [Node] Executing "PlotAirmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:24:32 | INFO | nipype.workflow | [Node] Finished "PlotAirmask", elapsed time 2.174804s.
2025-09-17 07:24:34 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.PlotArtmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/PlotArtmask".
2025-09-17 07:24:34 | INFO | nipype.workflow | [Node] Executing "PlotArtmask" <nireports.interfaces.mosaic.PlotContours>
2025-09-17 07:24:36 | INFO | nipype.workflow | [Node] Finished "PlotArtmask", elapsed time 2.195629s.
2025-09-17 07:24:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_headmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/ds_report_headmask".
2025-09-17 07:24:38 | INFO | nipype.workflow | [Node] Executing "ds_report_headmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:24:38 | INFO | nipype.workflow | [Node] Finished "ds_report_headmask", elapsed time 0.004352s.
2025-09-17 07:24:38 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/measures".
2025-09-17 07:24:38 | INFO | nipype.workflow | [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
2025-09-17 07:24:43 | INFO | nipype.workflow | [Node] Finished "measures", elapsed time 5.373582s.
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_segm" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/ds_report_segm".
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Executing "ds_report_segm" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Finished "ds_report_segm", elapsed time 0.004519s.
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_noisefit" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/ds_report_noisefit".
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Executing "ds_report_noisefit" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Finished "ds_report_noisefit", elapsed time 0.004314s.
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_airmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/ds_report_airmask".
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Executing "ds_report_airmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Finished "ds_report_airmask", elapsed time 0.004375s.
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.anat_report_wf.ds_report_artmask" in "/tmp/mriqc_wf/anatMRIQC/anat_report_wf/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/ds_report_artmask".
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Executing "ds_report_artmask" <mriqc.interfaces.DerivativesDataSink>
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Finished "ds_report_artmask", elapsed time 0.004357s.
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/tmp/mriqc_wf/anatMRIQC/ComputeIQMs/_entities_subject01.suffixT1w.datatypeanat.extension.nii.gz_in_file_..var..lib..condor..execute..dir_2132088..ds..sourcedata..raw..sub-01..anat..sub-01_T1w.nii.gz_metadata_FileSize0.005274300463497639.FileSizeUnitsGB.NumberOfVolumes1/datasink".
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
2025-09-17 07:24:44 | INFO | nipype.workflow | [Node] Finished "datasink", elapsed time 0.000426s.
2025-09-17 07:24:46 | INFO | nipype.workflow | Generating reports...
2025-09-17 07:24:46 | INFO | nipype.workflow | Report generation finished (4 reports).
2025-09-17 07:24:46 | IMPORTANT | mriqc | Participant level finished successfully averaging 00h 07min 33s per subject.
2025-09-17 07:24:46 | INFO | mriqc | Generating BIDS derivatives metadata.
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MRIQC completed (elapsed time 00h 30min 12s).
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